data_2ZDB # _entry.id 2ZDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZDB RCSB RCSB027827 WWPDB D_1000027827 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2011-06-15 _pdbx_database_PDB_obs_spr.pdb_id 3B02 _pdbx_database_PDB_obs_spr.replace_pdb_id 2ZDB _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001007.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2ZDB _pdbx_database_status.recvd_initial_deposition_date 2007-11-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Agari, Y.' 1 'Shinkai, A.' 2 'Yokoyama, S.' 3 'Kuramitsu, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal structure of TTHB099, a transcriptional regulator CRP family from Thermus thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Agari, Y.' 1 primary 'Kuramitsu, S.' 2 primary 'Shinkai, A.' 3 # _cell.entry_id 2ZDB _cell.length_a 147.645 _cell.length_b 147.645 _cell.length_c 147.645 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZDB _symmetry.space_group_name_H-M 'I 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, Crp family' 22173.387 1 ? ? ? ? 2 water nat water 18.015 120 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKAYRYTAEAMTEAVVQGLEPRA MDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVL ADLRREGLIATAYRRVYLLDLAALEREAGSALEAA ; _entity_poly.pdbx_seq_one_letter_code_can ;MKRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKAYRYTAEAMTEAVVQGLEPRA MDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVL ADLRREGLIATAYRRVYLLDLAALEREAGSALEAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001007.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ARG n 1 4 PHE n 1 5 ALA n 1 6 ARG n 1 7 LYS n 1 8 GLU n 1 9 THR n 1 10 ILE n 1 11 TYR n 1 12 LEU n 1 13 ARG n 1 14 GLY n 1 15 GLU n 1 16 GLU n 1 17 ALA n 1 18 ARG n 1 19 THR n 1 20 LEU n 1 21 TYR n 1 22 ARG n 1 23 LEU n 1 24 GLU n 1 25 GLU n 1 26 GLY n 1 27 LEU n 1 28 VAL n 1 29 ARG n 1 30 VAL n 1 31 VAL n 1 32 GLU n 1 33 LEU n 1 34 LEU n 1 35 PRO n 1 36 ASP n 1 37 GLY n 1 38 ARG n 1 39 LEU n 1 40 ILE n 1 41 THR n 1 42 LEU n 1 43 ARG n 1 44 HIS n 1 45 VAL n 1 46 LEU n 1 47 PRO n 1 48 GLY n 1 49 ASP n 1 50 TYR n 1 51 PHE n 1 52 GLY n 1 53 GLU n 1 54 GLU n 1 55 ALA n 1 56 LEU n 1 57 GLU n 1 58 GLY n 1 59 LYS n 1 60 ALA n 1 61 TYR n 1 62 ARG n 1 63 TYR n 1 64 THR n 1 65 ALA n 1 66 GLU n 1 67 ALA n 1 68 MET n 1 69 THR n 1 70 GLU n 1 71 ALA n 1 72 VAL n 1 73 VAL n 1 74 GLN n 1 75 GLY n 1 76 LEU n 1 77 GLU n 1 78 PRO n 1 79 ARG n 1 80 ALA n 1 81 MET n 1 82 ASP n 1 83 HIS n 1 84 GLU n 1 85 ALA n 1 86 LEU n 1 87 HIS n 1 88 ARG n 1 89 VAL n 1 90 ALA n 1 91 ARG n 1 92 ASN n 1 93 LEU n 1 94 ALA n 1 95 ARG n 1 96 GLN n 1 97 MET n 1 98 ARG n 1 99 ARG n 1 100 VAL n 1 101 GLN n 1 102 ALA n 1 103 TYR n 1 104 GLU n 1 105 ALA n 1 106 HIS n 1 107 LEU n 1 108 GLN n 1 109 THR n 1 110 GLY n 1 111 GLU n 1 112 LEU n 1 113 ARG n 1 114 ALA n 1 115 ARG n 1 116 ILE n 1 117 ALA n 1 118 ARG n 1 119 TYR n 1 120 LEU n 1 121 LEU n 1 122 PHE n 1 123 LEU n 1 124 ALA n 1 125 ASP n 1 126 THR n 1 127 PRO n 1 128 LEU n 1 129 SER n 1 130 ALA n 1 131 ARG n 1 132 ASP n 1 133 ARG n 1 134 GLN n 1 135 GLY n 1 136 ILE n 1 137 TYR n 1 138 VAL n 1 139 THR n 1 140 VAL n 1 141 SER n 1 142 HIS n 1 143 GLU n 1 144 GLU n 1 145 ILE n 1 146 ALA n 1 147 ASP n 1 148 ALA n 1 149 THR n 1 150 ALA n 1 151 SER n 1 152 ILE n 1 153 ARG n 1 154 GLU n 1 155 SER n 1 156 VAL n 1 157 SER n 1 158 LYS n 1 159 VAL n 1 160 LEU n 1 161 ALA n 1 162 ASP n 1 163 LEU n 1 164 ARG n 1 165 ARG n 1 166 GLU n 1 167 GLY n 1 168 LEU n 1 169 ILE n 1 170 ALA n 1 171 THR n 1 172 ALA n 1 173 TYR n 1 174 ARG n 1 175 ARG n 1 176 VAL n 1 177 TYR n 1 178 LEU n 1 179 LEU n 1 180 ASP n 1 181 LEU n 1 182 ALA n 1 183 ALA n 1 184 LEU n 1 185 GLU n 1 186 ARG n 1 187 GLU n 1 188 ALA n 1 189 GLY n 1 190 SER n 1 191 ALA n 1 192 LEU n 1 193 GLU n 1 194 ALA n 1 195 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53W63_THET8 _struct_ref.pdbx_db_accession Q53W63 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKAYRYTAEAMTEAVVQGLEPRA MDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVL ADLRREGLIATAYRRVYLLDLAALEREAGSALEAA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZDB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 195 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q53W63 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 195 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 195 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZDB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_percent_sol 59.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '18% Polyacrylic Acid 5100, 0.1M HEPES, 0.1M Magnesium Chloride, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-10-13 _diffrn_detector.details 'A fixed exit Si double crystal monochromator followed by a two dimensional focusing mirror which is coated in rhodium.' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2ZDB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 18849 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 125.7 _reflns.B_iso_Wilson_estimate 17.5 _reflns.pdbx_redundancy 60.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.185 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 34.8 _reflns_shell.pdbx_redundancy 62.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1837 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ZDB _refine.ls_number_reflns_obs 18831 _refine.ls_number_reflns_all 18831 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 5925152.22 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.69 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_all 0.212 _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1853 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.0 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.371732 _refine.solvent_model_param_bsol 45.1694 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2COH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZDB _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.08 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1548 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1668 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 46.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.68 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2725 _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.percent_reflns_obs 99.4 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 299 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 3024 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2ZDB _struct.title 'Crystal structure of TTHB099, a transcriptional regulator CRP family from Thermus thermophilus HB8' _struct.pdbx_descriptor 'Transcriptional regulator, Crp family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZDB _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;cAMP-binding domain, winged helix-turn-helix, transcriptional regulator, CRP family, Thermus thermophilus, DNA-binding, Transcription regulation, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 52 ? GLU A 57 ? GLY A 52 GLU A 57 5 ? 6 HELX_P HELX_P2 2 GLU A 77 ? MET A 81 ? GLU A 77 MET A 81 5 ? 5 HELX_P HELX_P3 3 ASP A 82 ? GLN A 108 ? ASP A 82 GLN A 108 1 ? 27 HELX_P HELX_P4 4 GLU A 111 ? ALA A 124 ? GLU A 111 ALA A 124 1 ? 14 HELX_P HELX_P5 5 SER A 141 ? ALA A 148 ? SER A 141 ALA A 148 1 ? 8 HELX_P HELX_P6 6 ILE A 152 ? GLU A 166 ? ILE A 152 GLU A 166 1 ? 15 HELX_P HELX_P7 7 ASP A 180 ? GLY A 189 ? ASP A 180 GLY A 189 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 2 ? PHE A 4 ? LYS A 2 PHE A 4 A 2 ALA A 71 ? LEU A 76 ? ALA A 71 LEU A 76 A 3 LEU A 20 ? GLU A 25 ? LEU A 20 GLU A 25 A 4 TYR A 50 ? PHE A 51 ? TYR A 50 PHE A 51 B 1 THR A 9 ? TYR A 11 ? THR A 9 TYR A 11 B 2 THR A 64 ? ALA A 67 ? THR A 64 ALA A 67 B 3 VAL A 28 ? LEU A 33 ? VAL A 28 LEU A 33 B 4 LEU A 39 ? VAL A 45 ? LEU A 39 VAL A 45 C 1 SER A 129 ? ASP A 132 ? SER A 129 ASP A 132 C 2 GLY A 135 ? THR A 139 ? GLY A 135 THR A 139 C 3 ARG A 175 ? LEU A 178 ? ARG A 175 LEU A 178 C 4 ILE A 169 ? ALA A 172 ? ILE A 169 ALA A 172 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 4 ? N PHE A 4 O ALA A 71 ? O ALA A 71 A 2 3 O VAL A 72 ? O VAL A 72 N GLU A 24 ? N GLU A 24 A 3 4 N TYR A 21 ? N TYR A 21 O PHE A 51 ? O PHE A 51 B 1 2 N ILE A 10 ? N ILE A 10 O ALA A 65 ? O ALA A 65 B 2 3 O THR A 64 ? O THR A 64 N VAL A 31 ? N VAL A 31 B 3 4 N VAL A 28 ? N VAL A 28 O VAL A 45 ? O VAL A 45 C 1 2 N ALA A 130 ? N ALA A 130 O TYR A 137 ? O TYR A 137 C 2 3 N ILE A 136 ? N ILE A 136 O LEU A 178 ? O LEU A 178 C 3 4 O TYR A 177 ? O TYR A 177 N ALA A 170 ? N ALA A 170 # _database_PDB_matrix.entry_id 2ZDB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZDB _atom_sites.fract_transf_matrix[1][1] 0.006773 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006773 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006773 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 HIS 87 87 87 HIS HIS A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 THR 171 171 171 THR THR A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 ALA 194 194 ? ? ? A . n A 1 195 ALA 195 195 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 196 1 HOH HOH A . B 2 HOH 2 197 2 HOH HOH A . B 2 HOH 3 198 3 HOH HOH A . B 2 HOH 4 199 4 HOH HOH A . B 2 HOH 5 200 5 HOH HOH A . B 2 HOH 6 201 6 HOH HOH A . B 2 HOH 7 202 7 HOH HOH A . B 2 HOH 8 203 8 HOH HOH A . B 2 HOH 9 204 9 HOH HOH A . B 2 HOH 10 205 10 HOH HOH A . B 2 HOH 11 206 11 HOH HOH A . B 2 HOH 12 207 12 HOH HOH A . B 2 HOH 13 208 13 HOH HOH A . B 2 HOH 14 209 14 HOH HOH A . B 2 HOH 15 210 15 HOH HOH A . B 2 HOH 16 211 16 HOH HOH A . B 2 HOH 17 212 17 HOH HOH A . B 2 HOH 18 213 18 HOH HOH A . B 2 HOH 19 214 19 HOH HOH A . B 2 HOH 20 215 20 HOH HOH A . B 2 HOH 21 216 21 HOH HOH A . B 2 HOH 22 217 22 HOH HOH A . B 2 HOH 23 218 23 HOH HOH A . B 2 HOH 24 219 24 HOH HOH A . B 2 HOH 25 220 25 HOH HOH A . B 2 HOH 26 221 26 HOH HOH A . B 2 HOH 27 222 27 HOH HOH A . B 2 HOH 28 223 28 HOH HOH A . B 2 HOH 29 224 29 HOH HOH A . B 2 HOH 30 225 30 HOH HOH A . B 2 HOH 31 226 31 HOH HOH A . B 2 HOH 32 227 32 HOH HOH A . B 2 HOH 33 228 33 HOH HOH A . B 2 HOH 34 229 34 HOH HOH A . B 2 HOH 35 230 35 HOH HOH A . B 2 HOH 36 231 36 HOH HOH A . B 2 HOH 37 232 37 HOH HOH A . B 2 HOH 38 233 38 HOH HOH A . B 2 HOH 39 234 39 HOH HOH A . B 2 HOH 40 235 40 HOH HOH A . B 2 HOH 41 236 41 HOH HOH A . B 2 HOH 42 237 42 HOH HOH A . B 2 HOH 43 238 43 HOH HOH A . B 2 HOH 44 239 44 HOH HOH A . B 2 HOH 45 240 45 HOH HOH A . B 2 HOH 46 241 46 HOH HOH A . B 2 HOH 47 242 47 HOH HOH A . B 2 HOH 48 243 48 HOH HOH A . B 2 HOH 49 244 49 HOH HOH A . B 2 HOH 50 245 50 HOH HOH A . B 2 HOH 51 246 51 HOH HOH A . B 2 HOH 52 247 52 HOH HOH A . B 2 HOH 53 248 53 HOH HOH A . B 2 HOH 54 249 54 HOH HOH A . B 2 HOH 55 250 55 HOH HOH A . B 2 HOH 56 251 56 HOH HOH A . B 2 HOH 57 252 57 HOH HOH A . B 2 HOH 58 253 58 HOH HOH A . B 2 HOH 59 254 59 HOH HOH A . B 2 HOH 60 255 60 HOH HOH A . B 2 HOH 61 256 61 HOH HOH A . B 2 HOH 62 257 62 HOH HOH A . B 2 HOH 63 258 63 HOH HOH A . B 2 HOH 64 259 64 HOH HOH A . B 2 HOH 65 260 65 HOH HOH A . B 2 HOH 66 261 66 HOH HOH A . B 2 HOH 67 262 67 HOH HOH A . B 2 HOH 68 263 68 HOH HOH A . B 2 HOH 69 264 69 HOH HOH A . B 2 HOH 70 265 70 HOH HOH A . B 2 HOH 71 266 71 HOH HOH A . B 2 HOH 72 267 72 HOH HOH A . B 2 HOH 73 268 73 HOH HOH A . B 2 HOH 74 269 74 HOH HOH A . B 2 HOH 75 270 75 HOH HOH A . B 2 HOH 76 271 76 HOH HOH A . B 2 HOH 77 272 77 HOH HOH A . B 2 HOH 78 273 78 HOH HOH A . B 2 HOH 79 274 79 HOH HOH A . B 2 HOH 80 275 80 HOH HOH A . B 2 HOH 81 276 81 HOH HOH A . B 2 HOH 82 277 82 HOH HOH A . B 2 HOH 83 278 83 HOH HOH A . B 2 HOH 84 279 84 HOH HOH A . B 2 HOH 85 280 85 HOH HOH A . B 2 HOH 86 281 86 HOH HOH A . B 2 HOH 87 282 87 HOH HOH A . B 2 HOH 88 283 88 HOH HOH A . B 2 HOH 89 284 89 HOH HOH A . B 2 HOH 90 285 90 HOH HOH A . B 2 HOH 91 286 91 HOH HOH A . B 2 HOH 92 287 92 HOH HOH A . B 2 HOH 93 288 93 HOH HOH A . B 2 HOH 94 289 94 HOH HOH A . B 2 HOH 95 290 95 HOH HOH A . B 2 HOH 96 291 96 HOH HOH A . B 2 HOH 97 292 97 HOH HOH A . B 2 HOH 98 293 98 HOH HOH A . B 2 HOH 99 294 99 HOH HOH A . B 2 HOH 100 295 100 HOH HOH A . B 2 HOH 101 296 101 HOH HOH A . B 2 HOH 102 297 102 HOH HOH A . B 2 HOH 103 298 103 HOH HOH A . B 2 HOH 104 299 104 HOH HOH A . B 2 HOH 105 300 105 HOH HOH A . B 2 HOH 106 301 106 HOH HOH A . B 2 HOH 107 302 107 HOH HOH A . B 2 HOH 108 303 108 HOH HOH A . B 2 HOH 109 304 109 HOH HOH A . B 2 HOH 110 305 110 HOH HOH A . B 2 HOH 111 306 111 HOH HOH A . B 2 HOH 112 307 112 HOH HOH A . B 2 HOH 113 308 113 HOH HOH A . B 2 HOH 114 309 114 HOH HOH A . B 2 HOH 115 310 115 HOH HOH A . B 2 HOH 116 311 116 HOH HOH A . B 2 HOH 117 312 117 HOH HOH A . B 2 HOH 118 313 118 HOH HOH A . B 2 HOH 119 314 119 HOH HOH A . B 2 HOH 120 315 120 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3530 ? 1 MORE -19 ? 1 'SSA (A^2)' 17260 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 18_645 -x+5/4,z-1/4,y+1/4 -1.0000000000 0.0000000000 0.0000000000 184.5562500000 0.0000000000 0.0000000000 1.0000000000 -36.9112500000 0.0000000000 1.0000000000 0.0000000000 36.9112500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-09 2 'Structure model' 1 1 2011-06-15 3 'Structure model' 1 2 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 3 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BSS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 7 ? ? 79.78 -9.16 2 1 GLU A 57 ? ? -134.13 -33.47 3 1 ALA A 172 ? ? -179.88 141.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 194 ? A ALA 194 2 1 Y 1 A ALA 195 ? A ALA 195 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #