HEADER TRANSFERASE 06-DEC-07 2ZE5 TITLE CRYSTAL STRUCTURE OF ADENOSINE PHOSPHATE-ISOPENTENYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENTENYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENOSINE PHOSPHATE-ISOPENTENYL TRANSFERASE, DIMETHYLALLYL COMPND 5 TRANSFERASE, TRANS-ZEATIN PRODUCING PROTEIN; COMPND 6 EC: 2.5.1.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 GENE: TZS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS TRANSFERASE, CROWN GALL TUMOR, CYTOKININ BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR H.SAKAKIBARA REVDAT 5 13-MAR-24 2ZE5 1 REMARK SEQADV REVDAT 4 13-JUL-11 2ZE5 1 VERSN REVDAT 3 24-FEB-09 2ZE5 1 VERSN REVDAT 2 12-AUG-08 2ZE5 1 JRNL REVDAT 1 05-FEB-08 2ZE5 0 JRNL AUTH H.SUGAWARA,N.UEDA,M.KOJIMA,N.MAKITA,T.YAMAYA,H.SAKAKIBARA JRNL TITL STRUCTURAL INSIGHT INTO THE REACTION MECHANISM AND EVOLUTION JRNL TITL 2 OF CYTOKININ BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 2734 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18258747 JRNL DOI 10.1073/PNAS.0707374105 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 13059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08000 REMARK 3 B22 (A**2) : 2.08000 REMARK 3 B33 (A**2) : -4.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1890 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2564 ; 2.258 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;40.404 ;22.903 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;17.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.064 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1445 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 841 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1273 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1193 ; 1.190 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 1.855 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 840 ; 3.243 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 744 ; 4.753 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 66.9620 57.6773 18.0742 REMARK 3 T TENSOR REMARK 3 T11: 0.0050 T22: -0.1912 REMARK 3 T33: -0.1151 T12: -0.0609 REMARK 3 T13: 0.0553 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.6583 L22: 3.1512 REMARK 3 L33: 1.6541 L12: -1.0748 REMARK 3 L13: -0.8651 L23: 0.6179 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: 0.1728 S13: 0.0822 REMARK 3 S21: -0.3519 S22: -0.0020 S23: -0.2966 REMARK 3 S31: 0.0658 S32: -0.2005 S33: -0.1147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000027857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4-2.0M SODIUM FORMATE, 5MM MAGNESIUM REMARK 280 CHLORIDE, 0.1M SODIUM ACETATE BUFFER, PH 4.8-5.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.19600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.19600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.59850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.19600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.19600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.59850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.19600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.19600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.59850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.19600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.19600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.59850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 ALA A 230 REMARK 465 GLY A 231 REMARK 465 GLN A 232 REMARK 465 PRO A 233 REMARK 465 VAL A 234 REMARK 465 CYS A 235 REMARK 465 PRO A 236 REMARK 465 VAL A 237 REMARK 465 THR A 238 REMARK 465 LEU A 239 REMARK 465 THR A 240 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 ARG A 243 REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 11 NH1 ARG A 134 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 14 CE LYS A 14 NZ 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU A 66 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 123 CA - CB - CG ANGL. DEV. = -17.1 DEGREES REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZE6 RELATED DB: PDB REMARK 900 RELATED ID: 2ZE7 RELATED DB: PDB REMARK 900 RELATED ID: 2ZE8 RELATED DB: PDB DBREF 2ZE5 A 1 243 UNP P58758 IPTZ_AGRT5 1 243 SEQADV 2ZE5 GLY A 244 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 SER A 245 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 ARG A 246 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 SER A 247 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 248 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 249 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 250 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 251 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 252 UNP P58758 EXPRESSION TAG SEQADV 2ZE5 HIS A 253 UNP P58758 EXPRESSION TAG SEQRES 1 A 253 MET LEU LEU HIS LEU ILE TYR GLY PRO THR CYS SER GLY SEQRES 2 A 253 LYS THR ASP MET ALA ILE GLN ILE ALA GLN GLU THR GLY SEQRES 3 A 253 TRP PRO VAL VAL ALA LEU ASP ARG VAL GLN CYS CYS PRO SEQRES 4 A 253 GLN ILE ALA THR GLY SER GLY ARG PRO LEU GLU SER GLU SEQRES 5 A 253 LEU GLN SER THR ARG ARG ILE TYR LEU ASP SER ARG PRO SEQRES 6 A 253 LEU THR GLU GLY ILE LEU ASP ALA GLU SER ALA HIS ARG SEQRES 7 A 253 ARG LEU ILE PHE GLU VAL ASP TRP ARG LYS SER GLU GLU SEQRES 8 A 253 GLY LEU ILE LEU GLU GLY GLY SER ILE SER LEU LEU ASN SEQRES 9 A 253 CYS MET ALA LYS SER PRO PHE TRP ARG SER GLY PHE GLN SEQRES 10 A 253 TRP HIS VAL LYS ARG LEU ARG LEU GLY ASP SER ASP ALA SEQRES 11 A 253 PHE LEU THR ARG ALA LYS GLN ARG VAL ALA GLU MET PHE SEQRES 12 A 253 ALA ILE ARG GLU ASP ARG PRO SER LEU LEU GLU GLU LEU SEQRES 13 A 253 ALA GLU LEU TRP ASN TYR PRO ALA ALA ARG PRO ILE LEU SEQRES 14 A 253 GLU ASP ILE ASP GLY TYR ARG CYS ALA ILE ARG PHE ALA SEQRES 15 A 253 ARG LYS HIS ASP LEU ALA ILE SER GLN LEU PRO ASN ILE SEQRES 16 A 253 ASP ALA GLY ARG HIS VAL GLU LEU ILE GLU ALA ILE ALA SEQRES 17 A 253 ASN GLU TYR LEU GLU HIS ALA LEU SER GLN GLU ARG ASP SEQRES 18 A 253 PHE PRO GLN TRP PRO GLU ASP GLY ALA GLY GLN PRO VAL SEQRES 19 A 253 CYS PRO VAL THR LEU THR ARG ILE ARG GLY SER ARG SER SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS HET CL A 301 1 HET AMP A 401 23 HETNAM CL CHLORIDE ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 CL CL 1- FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 HOH *46(H2 O) HELIX 1 1 GLY A 13 GLY A 26 1 14 HELIX 2 2 ARG A 34 ALA A 42 5 9 HELIX 3 3 GLU A 50 GLN A 54 5 5 HELIX 4 4 PRO A 65 GLY A 69 5 5 HELIX 5 5 ASP A 72 TRP A 86 1 15 HELIX 6 6 SER A 99 SER A 109 1 11 HELIX 7 7 PRO A 110 SER A 114 5 5 HELIX 8 8 ASP A 127 ALA A 144 1 18 HELIX 9 9 SER A 151 ASN A 161 1 11 HELIX 10 10 ALA A 164 GLU A 170 1 7 HELIX 11 11 GLY A 174 HIS A 185 1 12 HELIX 12 12 ALA A 188 ILE A 195 5 8 HELIX 13 13 ASP A 196 PHE A 222 1 27 SHEET 1 A 5 ARG A 58 ILE A 59 0 SHEET 2 A 5 VAL A 29 ALA A 31 1 N VAL A 29 O ILE A 59 SHEET 3 A 5 GLY A 92 GLY A 97 1 O ILE A 94 N VAL A 30 SHEET 4 A 5 LEU A 2 TYR A 7 1 N HIS A 4 O LEU A 93 SHEET 5 A 5 GLN A 117 ARG A 122 1 O LYS A 121 N LEU A 5 SITE 1 AC1 3 SER A 12 GLY A 13 LYS A 14 SITE 1 AC2 14 ASP A 33 ARG A 34 SER A 45 SER A 99 SITE 2 AC2 14 ILE A 100 SER A 101 ASP A 171 ILE A 172 SITE 3 AC2 14 ASP A 173 ARG A 176 HIS A 214 HOH A 404 SITE 4 AC2 14 HOH A 410 HOH A 419 CRYST1 96.392 96.392 65.197 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015338 0.00000