data_2ZFC # _entry.id 2ZFC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZFC pdb_00002zfc 10.2210/pdb2zfc/pdb RCSB RCSB027900 ? ? WWPDB D_1000027900 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2ZFC _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-12-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dwyer, J.J.' 1 'Wilson, K.L.' 2 'Martin, K.' 3 'Seedorff, J.E.' 4 'Hasan, A.' 5 'Kim, H.' 6 # _citation.id primary _citation.title 'Design of an engineered N-terminal HIV-1 gp41 trimer with enhanced stability and potency' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 17 _citation.page_first 633 _citation.page_last 643 _citation.year 2008 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18359857 _citation.pdbx_database_id_DOI 10.1110/ps.073307608 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dwyer, J.J.' 1 ? primary 'Wilson, K.L.' 2 ? primary 'Martin, K.' 3 ? primary 'Seedorff, J.E.' 4 ? primary 'Hasan, A.' 5 ? primary 'Medinas, R.J.' 6 ? primary 'Davison, D.K.' 7 ? primary 'Feese, M.D.' 8 ? primary 'Richter, H.T.' 9 ? primary 'Kim, H.' 10 ? primary 'Matthews, T.J.' 11 ? primary 'Delmedico, M.K.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 GP41' 5558.464 3 ? ? ? ? 2 water nat water 18.015 185 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QARQLVSGLVQQQNNILRALEATQHAVQALVWGVKQLQARVLALERYIK _entity_poly.pdbx_seq_one_letter_code_can QARQLVSGLVQQQNNILRALEATQHAVQALVWGVKQLQARVLALERYIK _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 ARG n 1 4 GLN n 1 5 LEU n 1 6 VAL n 1 7 SER n 1 8 GLY n 1 9 LEU n 1 10 VAL n 1 11 GLN n 1 12 GLN n 1 13 GLN n 1 14 ASN n 1 15 ASN n 1 16 ILE n 1 17 LEU n 1 18 ARG n 1 19 ALA n 1 20 LEU n 1 21 GLU n 1 22 ALA n 1 23 THR n 1 24 GLN n 1 25 HIS n 1 26 ALA n 1 27 VAL n 1 28 GLN n 1 29 ALA n 1 30 LEU n 1 31 VAL n 1 32 TRP n 1 33 GLY n 1 34 VAL n 1 35 LYS n 1 36 GLN n 1 37 LEU n 1 38 GLN n 1 39 ALA n 1 40 ARG n 1 41 VAL n 1 42 LEU n 1 43 ALA n 1 44 LEU n 1 45 GLU n 1 46 ARG n 1 47 TYR n 1 48 ILE n 1 49 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 GLN 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 LYS 49 49 49 LYS LYS A . n B 1 1 GLN 1 1 ? ? ? B . n B 1 2 ALA 2 2 ? ? ? B . n B 1 3 ARG 3 3 ? ? ? B . n B 1 4 GLN 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 GLN 11 11 11 GLN GLN B . n B 1 12 GLN 12 12 12 GLN GLN B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 ASN 14 14 14 ASN ASN B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 GLN 24 24 24 GLN GLN B . n B 1 25 HIS 25 25 25 HIS HIS B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 TRP 32 32 32 TRP TRP B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 GLN 38 38 38 GLN GLN B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 ARG 40 40 40 ARG ARG B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 TYR 47 47 47 TYR TYR B . n B 1 48 ILE 48 48 48 ILE ILE B . n B 1 49 LYS 49 49 49 LYS LYS B . n C 1 1 GLN 1 1 ? ? ? C . n C 1 2 ALA 2 2 ? ? ? C . n C 1 3 ARG 3 3 ? ? ? C . n C 1 4 GLN 4 4 ? ? ? C . n C 1 5 LEU 5 5 ? ? ? C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 SER 7 7 7 SER SER C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 GLN 11 11 11 GLN GLN C . n C 1 12 GLN 12 12 12 GLN GLN C . n C 1 13 GLN 13 13 13 GLN GLN C . n C 1 14 ASN 14 14 14 ASN ASN C . n C 1 15 ASN 15 15 15 ASN ASN C . n C 1 16 ILE 16 16 16 ILE ILE C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 ARG 18 18 18 ARG ARG C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 LEU 20 20 20 LEU LEU C . n C 1 21 GLU 21 21 21 GLU GLU C . n C 1 22 ALA 22 22 22 ALA ALA C . n C 1 23 THR 23 23 23 THR THR C . n C 1 24 GLN 24 24 24 GLN GLN C . n C 1 25 HIS 25 25 25 HIS HIS C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 VAL 27 27 27 VAL VAL C . n C 1 28 GLN 28 28 28 GLN GLN C . n C 1 29 ALA 29 29 29 ALA ALA C . n C 1 30 LEU 30 30 30 LEU LEU C . n C 1 31 VAL 31 31 31 VAL VAL C . n C 1 32 TRP 32 32 32 TRP TRP C . n C 1 33 GLY 33 33 33 GLY GLY C . n C 1 34 VAL 34 34 34 VAL VAL C . n C 1 35 LYS 35 35 35 LYS LYS C . n C 1 36 GLN 36 36 36 GLN ALA C . n C 1 37 LEU 37 37 37 LEU LEU C . n C 1 38 GLN 38 38 38 GLN GLN C . n C 1 39 ALA 39 39 39 ALA ALA C . n C 1 40 ARG 40 40 40 ARG ARG C . n C 1 41 VAL 41 41 41 VAL VAL C . n C 1 42 LEU 42 42 42 LEU LEU C . n C 1 43 ALA 43 43 43 ALA ALA C . n C 1 44 LEU 44 44 44 LEU LEU C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 ARG 46 46 46 ARG ARG C . n C 1 47 TYR 47 47 47 TYR TYR C . n C 1 48 ILE 48 48 48 ILE ILE C . n C 1 49 LYS 49 49 49 LYS LYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 50 1 HOH HOH A . D 2 HOH 2 51 2 HOH HOH A . D 2 HOH 3 52 4 HOH HOH A . D 2 HOH 4 53 13 HOH HOH A . D 2 HOH 5 54 19 HOH HOH A . D 2 HOH 6 55 20 HOH HOH A . D 2 HOH 7 56 23 HOH HOH A . D 2 HOH 8 57 24 HOH HOH A . D 2 HOH 9 58 26 HOH HOH A . D 2 HOH 10 59 28 HOH HOH A . D 2 HOH 11 60 32 HOH HOH A . D 2 HOH 12 61 34 HOH HOH A . D 2 HOH 13 62 36 HOH HOH A . D 2 HOH 14 63 41 HOH HOH A . D 2 HOH 15 64 51 HOH HOH A . D 2 HOH 16 65 52 HOH HOH A . D 2 HOH 17 66 56 HOH HOH A . D 2 HOH 18 67 60 HOH HOH A . D 2 HOH 19 68 71 HOH HOH A . D 2 HOH 20 69 74 HOH HOH A . D 2 HOH 21 70 75 HOH HOH A . D 2 HOH 22 71 76 HOH HOH A . D 2 HOH 23 72 77 HOH HOH A . D 2 HOH 24 73 79 HOH HOH A . D 2 HOH 25 74 80 HOH HOH A . D 2 HOH 26 75 84 HOH HOH A . D 2 HOH 27 76 88 HOH HOH A . D 2 HOH 28 77 90 HOH HOH A . D 2 HOH 29 78 92 HOH HOH A . D 2 HOH 30 79 96 HOH HOH A . D 2 HOH 31 80 100 HOH HOH A . D 2 HOH 32 81 102 HOH HOH A . D 2 HOH 33 82 105 HOH HOH A . D 2 HOH 34 83 106 HOH HOH A . D 2 HOH 35 84 113 HOH HOH A . D 2 HOH 36 85 116 HOH HOH A . D 2 HOH 37 86 117 HOH HOH A . D 2 HOH 38 87 120 HOH HOH A . D 2 HOH 39 88 124 HOH HOH A . D 2 HOH 40 89 126 HOH HOH A . D 2 HOH 41 90 129 HOH HOH A . D 2 HOH 42 91 131 HOH HOH A . D 2 HOH 43 92 135 HOH HOH A . D 2 HOH 44 93 137 HOH HOH A . D 2 HOH 45 94 138 HOH HOH A . D 2 HOH 46 95 144 HOH HOH A . D 2 HOH 47 96 147 HOH HOH A . D 2 HOH 48 97 149 HOH HOH A . D 2 HOH 49 98 157 HOH HOH A . D 2 HOH 50 99 161 HOH HOH A . D 2 HOH 51 100 162 HOH HOH A . D 2 HOH 52 101 163 HOH HOH A . D 2 HOH 53 102 165 HOH HOH A . D 2 HOH 54 103 167 HOH HOH A . D 2 HOH 55 104 168 HOH HOH A . D 2 HOH 56 105 173 HOH HOH A . D 2 HOH 57 106 174 HOH HOH A . D 2 HOH 58 107 183 HOH HOH A . D 2 HOH 59 108 184 HOH HOH A . D 2 HOH 60 109 185 HOH HOH A . D 2 HOH 61 110 114 HOH HOH A . E 2 HOH 1 50 3 HOH HOH B . E 2 HOH 2 51 5 HOH HOH B . E 2 HOH 3 52 8 HOH HOH B . E 2 HOH 4 53 9 HOH HOH B . E 2 HOH 5 54 11 HOH HOH B . E 2 HOH 6 55 12 HOH HOH B . E 2 HOH 7 56 16 HOH HOH B . E 2 HOH 8 57 18 HOH HOH B . E 2 HOH 9 58 22 HOH HOH B . E 2 HOH 10 59 29 HOH HOH B . E 2 HOH 11 60 35 HOH HOH B . E 2 HOH 12 61 39 HOH HOH B . E 2 HOH 13 62 44 HOH HOH B . E 2 HOH 14 63 46 HOH HOH B . E 2 HOH 15 64 53 HOH HOH B . E 2 HOH 16 65 55 HOH HOH B . E 2 HOH 17 66 57 HOH HOH B . E 2 HOH 18 67 58 HOH HOH B . E 2 HOH 19 68 59 HOH HOH B . E 2 HOH 20 69 61 HOH HOH B . E 2 HOH 21 70 62 HOH HOH B . E 2 HOH 22 71 64 HOH HOH B . E 2 HOH 23 72 67 HOH HOH B . E 2 HOH 24 73 68 HOH HOH B . E 2 HOH 25 74 72 HOH HOH B . E 2 HOH 26 75 83 HOH HOH B . E 2 HOH 27 76 85 HOH HOH B . E 2 HOH 28 77 89 HOH HOH B . E 2 HOH 29 78 93 HOH HOH B . E 2 HOH 30 79 99 HOH HOH B . E 2 HOH 31 80 107 HOH HOH B . E 2 HOH 32 81 112 HOH HOH B . E 2 HOH 33 82 118 HOH HOH B . E 2 HOH 34 83 119 HOH HOH B . E 2 HOH 35 84 122 HOH HOH B . E 2 HOH 36 85 127 HOH HOH B . E 2 HOH 37 86 128 HOH HOH B . E 2 HOH 38 87 132 HOH HOH B . E 2 HOH 39 88 133 HOH HOH B . E 2 HOH 40 89 136 HOH HOH B . E 2 HOH 41 90 143 HOH HOH B . E 2 HOH 42 91 145 HOH HOH B . E 2 HOH 43 92 148 HOH HOH B . E 2 HOH 44 93 150 HOH HOH B . E 2 HOH 45 94 151 HOH HOH B . E 2 HOH 46 95 152 HOH HOH B . E 2 HOH 47 96 154 HOH HOH B . E 2 HOH 48 97 159 HOH HOH B . E 2 HOH 49 98 164 HOH HOH B . E 2 HOH 50 99 178 HOH HOH B . E 2 HOH 51 100 179 HOH HOH B . F 2 HOH 1 107 180 HOH HOH C . F 2 HOH 2 108 6 HOH HOH C . F 2 HOH 3 109 7 HOH HOH C . F 2 HOH 4 110 10 HOH HOH C . F 2 HOH 5 111 14 HOH HOH C . F 2 HOH 6 112 15 HOH HOH C . F 2 HOH 7 113 17 HOH HOH C . F 2 HOH 8 114 21 HOH HOH C . F 2 HOH 9 115 25 HOH HOH C . F 2 HOH 10 116 27 HOH HOH C . F 2 HOH 11 117 30 HOH HOH C . F 2 HOH 12 118 31 HOH HOH C . F 2 HOH 13 119 33 HOH HOH C . F 2 HOH 14 120 37 HOH HOH C . F 2 HOH 15 121 38 HOH HOH C . F 2 HOH 16 122 40 HOH HOH C . F 2 HOH 17 123 42 HOH HOH C . F 2 HOH 18 124 43 HOH HOH C . F 2 HOH 19 125 45 HOH HOH C . F 2 HOH 20 126 47 HOH HOH C . F 2 HOH 21 127 48 HOH HOH C . F 2 HOH 22 128 49 HOH HOH C . F 2 HOH 23 129 50 HOH HOH C . F 2 HOH 24 130 54 HOH HOH C . F 2 HOH 25 131 63 HOH HOH C . F 2 HOH 26 132 65 HOH HOH C . F 2 HOH 27 133 66 HOH HOH C . F 2 HOH 28 134 69 HOH HOH C . F 2 HOH 29 135 70 HOH HOH C . F 2 HOH 30 136 73 HOH HOH C . F 2 HOH 31 137 78 HOH HOH C . F 2 HOH 32 138 81 HOH HOH C . F 2 HOH 33 139 82 HOH HOH C . F 2 HOH 34 140 86 HOH HOH C . F 2 HOH 35 141 87 HOH HOH C . F 2 HOH 36 142 91 HOH HOH C . F 2 HOH 37 143 94 HOH HOH C . F 2 HOH 38 144 95 HOH HOH C . F 2 HOH 39 145 97 HOH HOH C . F 2 HOH 40 146 98 HOH HOH C . F 2 HOH 41 147 101 HOH HOH C . F 2 HOH 42 148 103 HOH HOH C . F 2 HOH 43 149 104 HOH HOH C . F 2 HOH 44 150 108 HOH HOH C . F 2 HOH 45 151 109 HOH HOH C . F 2 HOH 46 152 110 HOH HOH C . F 2 HOH 47 153 111 HOH HOH C . F 2 HOH 48 154 115 HOH HOH C . F 2 HOH 49 155 121 HOH HOH C . F 2 HOH 50 156 123 HOH HOH C . F 2 HOH 51 157 125 HOH HOH C . F 2 HOH 52 158 130 HOH HOH C . F 2 HOH 53 159 134 HOH HOH C . F 2 HOH 54 160 139 HOH HOH C . F 2 HOH 55 161 140 HOH HOH C . F 2 HOH 56 162 141 HOH HOH C . F 2 HOH 57 163 142 HOH HOH C . F 2 HOH 58 164 146 HOH HOH C . F 2 HOH 59 165 153 HOH HOH C . F 2 HOH 60 166 155 HOH HOH C . F 2 HOH 61 167 156 HOH HOH C . F 2 HOH 62 168 158 HOH HOH C . F 2 HOH 63 169 160 HOH HOH C . F 2 HOH 64 170 166 HOH HOH C . F 2 HOH 65 171 169 HOH HOH C . F 2 HOH 66 172 170 HOH HOH C . F 2 HOH 67 173 171 HOH HOH C . F 2 HOH 68 174 172 HOH HOH C . F 2 HOH 69 175 175 HOH HOH C . F 2 HOH 70 176 176 HOH HOH C . F 2 HOH 71 177 177 HOH HOH C . F 2 HOH 72 178 181 HOH HOH C . F 2 HOH 73 179 182 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C GLN 36 ? CG ? C GLN 36 CG 2 1 Y 1 C GLN 36 ? CD ? C GLN 36 CD 3 1 Y 1 C GLN 36 ? OE1 ? C GLN 36 OE1 4 1 Y 1 C GLN 36 ? NE2 ? C GLN 36 NE2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 StructureStudio . ? ? ? ? 'data collection' ? ? ? 5 REFMAC . ? ? ? ? refinement ? ? ? 6 # _cell.length_a 103.569 _cell.length_b 103.569 _cell.length_c 44.895 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2ZFC _cell.pdbx_unique_axis ? _cell.Z_PDB 27 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3' _symmetry.entry_id 2ZFC _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 146 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2ZFC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '10%(v/v) iso-propanol, 0.1M Na Citrate pH 5.6, 10%(w/v) PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'Osmic Blue' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2ZFC _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 28563 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 44.0 _reflns.B_iso_Wilson_estimate 24.9 _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 68.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.pdbx_Rsym_value 0.312 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZFC _refine.B_iso_mean 27.739 _refine.pdbx_method_to_determine_struct SAD _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28563 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.266 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1046 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1231 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.9 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2ZFC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2ZFC _struct.title 'X-ray crystal structure of an engineered N-terminal HIV-1 GP41 trimer with enhanced stability and potency' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZFC _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'hiv-1, gp41, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2ZFC _struct_ref.pdbx_db_accession 2ZFC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code QARQLVSGLVQQQNNILRALEATQHAVQALVWGVKQLQARVLALERYIK _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZFC A 1 ? 49 ? 2ZFC 1 ? 49 ? 1 49 2 1 2ZFC B 1 ? 49 ? 2ZFC 1 ? 49 ? 1 49 3 1 2ZFC C 1 ? 49 ? 2ZFC 1 ? 49 ? 1 49 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4340 ? 1 MORE -44.4 ? 1 'SSA (A^2)' 8660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? LYS A 49 ? SER A 7 LYS A 49 1 ? 43 HELX_P HELX_P2 2 SER B 7 ? LYS B 49 ? SER B 7 LYS B 49 1 ? 43 HELX_P HELX_P3 3 SER C 7 ? LYS C 49 ? SER C 7 LYS C 49 1 ? 43 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 18 ? ? CZ A ARG 18 ? ? NH1 A ARG 18 ? ? 123.80 120.30 3.50 0.50 N 2 1 CD A ARG 40 ? ? NE A ARG 40 ? ? CZ A ARG 40 ? ? 134.06 123.60 10.46 1.40 N 3 1 NE A ARG 40 ? ? CZ A ARG 40 ? ? NH1 A ARG 40 ? ? 113.76 120.30 -6.54 0.50 N 4 1 NE A ARG 40 ? ? CZ A ARG 40 ? ? NH2 A ARG 40 ? ? 127.63 120.30 7.33 0.50 N 5 1 NE B ARG 40 ? ? CZ B ARG 40 ? ? NH2 B ARG 40 ? ? 126.06 120.30 5.76 0.50 N 6 1 CD B ARG 46 ? ? NE B ARG 46 ? ? CZ B ARG 46 ? ? 142.86 123.60 19.26 1.40 N 7 1 NE B ARG 46 ? ? CZ B ARG 46 ? ? NH1 B ARG 46 ? ? 123.73 120.30 3.43 0.50 N # _phasing.method SAD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 1 ? A GLN 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A GLN 4 ? A GLN 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 B GLN 1 ? B GLN 1 7 1 Y 1 B ALA 2 ? B ALA 2 8 1 Y 1 B ARG 3 ? B ARG 3 9 1 Y 1 B GLN 4 ? B GLN 4 10 1 Y 1 B LEU 5 ? B LEU 5 11 1 Y 1 C GLN 1 ? C GLN 1 12 1 Y 1 C ALA 2 ? C ALA 2 13 1 Y 1 C ARG 3 ? C ARG 3 14 1 Y 1 C GLN 4 ? C GLN 4 15 1 Y 1 C LEU 5 ? C LEU 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 HIS N N N N 107 HIS CA C N S 108 HIS C C N N 109 HIS O O N N 110 HIS CB C N N 111 HIS CG C Y N 112 HIS ND1 N Y N 113 HIS CD2 C Y N 114 HIS CE1 C Y N 115 HIS NE2 N Y N 116 HIS OXT O N N 117 HIS H H N N 118 HIS H2 H N N 119 HIS HA H N N 120 HIS HB2 H N N 121 HIS HB3 H N N 122 HIS HD1 H N N 123 HIS HD2 H N N 124 HIS HE1 H N N 125 HIS HE2 H N N 126 HIS HXT H N N 127 HOH O O N N 128 HOH H1 H N N 129 HOH H2 H N N 130 ILE N N N N 131 ILE CA C N S 132 ILE C C N N 133 ILE O O N N 134 ILE CB C N S 135 ILE CG1 C N N 136 ILE CG2 C N N 137 ILE CD1 C N N 138 ILE OXT O N N 139 ILE H H N N 140 ILE H2 H N N 141 ILE HA H N N 142 ILE HB H N N 143 ILE HG12 H N N 144 ILE HG13 H N N 145 ILE HG21 H N N 146 ILE HG22 H N N 147 ILE HG23 H N N 148 ILE HD11 H N N 149 ILE HD12 H N N 150 ILE HD13 H N N 151 ILE HXT H N N 152 LEU N N N N 153 LEU CA C N S 154 LEU C C N N 155 LEU O O N N 156 LEU CB C N N 157 LEU CG C N N 158 LEU CD1 C N N 159 LEU CD2 C N N 160 LEU OXT O N N 161 LEU H H N N 162 LEU H2 H N N 163 LEU HA H N N 164 LEU HB2 H N N 165 LEU HB3 H N N 166 LEU HG H N N 167 LEU HD11 H N N 168 LEU HD12 H N N 169 LEU HD13 H N N 170 LEU HD21 H N N 171 LEU HD22 H N N 172 LEU HD23 H N N 173 LEU HXT H N N 174 LYS N N N N 175 LYS CA C N S 176 LYS C C N N 177 LYS O O N N 178 LYS CB C N N 179 LYS CG C N N 180 LYS CD C N N 181 LYS CE C N N 182 LYS NZ N N N 183 LYS OXT O N N 184 LYS H H N N 185 LYS H2 H N N 186 LYS HA H N N 187 LYS HB2 H N N 188 LYS HB3 H N N 189 LYS HG2 H N N 190 LYS HG3 H N N 191 LYS HD2 H N N 192 LYS HD3 H N N 193 LYS HE2 H N N 194 LYS HE3 H N N 195 LYS HZ1 H N N 196 LYS HZ2 H N N 197 LYS HZ3 H N N 198 LYS HXT H N N 199 SER N N N N 200 SER CA C N S 201 SER C C N N 202 SER O O N N 203 SER CB C N N 204 SER OG O N N 205 SER OXT O N N 206 SER H H N N 207 SER H2 H N N 208 SER HA H N N 209 SER HB2 H N N 210 SER HB3 H N N 211 SER HG H N N 212 SER HXT H N N 213 THR N N N N 214 THR CA C N S 215 THR C C N N 216 THR O O N N 217 THR CB C N R 218 THR OG1 O N N 219 THR CG2 C N N 220 THR OXT O N N 221 THR H H N N 222 THR H2 H N N 223 THR HA H N N 224 THR HB H N N 225 THR HG1 H N N 226 THR HG21 H N N 227 THR HG22 H N N 228 THR HG23 H N N 229 THR HXT H N N 230 TRP N N N N 231 TRP CA C N S 232 TRP C C N N 233 TRP O O N N 234 TRP CB C N N 235 TRP CG C Y N 236 TRP CD1 C Y N 237 TRP CD2 C Y N 238 TRP NE1 N Y N 239 TRP CE2 C Y N 240 TRP CE3 C Y N 241 TRP CZ2 C Y N 242 TRP CZ3 C Y N 243 TRP CH2 C Y N 244 TRP OXT O N N 245 TRP H H N N 246 TRP H2 H N N 247 TRP HA H N N 248 TRP HB2 H N N 249 TRP HB3 H N N 250 TRP HD1 H N N 251 TRP HE1 H N N 252 TRP HE3 H N N 253 TRP HZ2 H N N 254 TRP HZ3 H N N 255 TRP HH2 H N N 256 TRP HXT H N N 257 TYR N N N N 258 TYR CA C N S 259 TYR C C N N 260 TYR O O N N 261 TYR CB C N N 262 TYR CG C Y N 263 TYR CD1 C Y N 264 TYR CD2 C Y N 265 TYR CE1 C Y N 266 TYR CE2 C Y N 267 TYR CZ C Y N 268 TYR OH O N N 269 TYR OXT O N N 270 TYR H H N N 271 TYR H2 H N N 272 TYR HA H N N 273 TYR HB2 H N N 274 TYR HB3 H N N 275 TYR HD1 H N N 276 TYR HD2 H N N 277 TYR HE1 H N N 278 TYR HE2 H N N 279 TYR HH H N N 280 TYR HXT H N N 281 VAL N N N N 282 VAL CA C N S 283 VAL C C N N 284 VAL O O N N 285 VAL CB C N N 286 VAL CG1 C N N 287 VAL CG2 C N N 288 VAL OXT O N N 289 VAL H H N N 290 VAL H2 H N N 291 VAL HA H N N 292 VAL HB H N N 293 VAL HG11 H N N 294 VAL HG12 H N N 295 VAL HG13 H N N 296 VAL HG21 H N N 297 VAL HG22 H N N 298 VAL HG23 H N N 299 VAL HXT H N N 300 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLU N CA sing N N 74 GLU N H sing N N 75 GLU N H2 sing N N 76 GLU CA C sing N N 77 GLU CA CB sing N N 78 GLU CA HA sing N N 79 GLU C O doub N N 80 GLU C OXT sing N N 81 GLU CB CG sing N N 82 GLU CB HB2 sing N N 83 GLU CB HB3 sing N N 84 GLU CG CD sing N N 85 GLU CG HG2 sing N N 86 GLU CG HG3 sing N N 87 GLU CD OE1 doub N N 88 GLU CD OE2 sing N N 89 GLU OE2 HE2 sing N N 90 GLU OXT HXT sing N N 91 GLY N CA sing N N 92 GLY N H sing N N 93 GLY N H2 sing N N 94 GLY CA C sing N N 95 GLY CA HA2 sing N N 96 GLY CA HA3 sing N N 97 GLY C O doub N N 98 GLY C OXT sing N N 99 GLY OXT HXT sing N N 100 HIS N CA sing N N 101 HIS N H sing N N 102 HIS N H2 sing N N 103 HIS CA C sing N N 104 HIS CA CB sing N N 105 HIS CA HA sing N N 106 HIS C O doub N N 107 HIS C OXT sing N N 108 HIS CB CG sing N N 109 HIS CB HB2 sing N N 110 HIS CB HB3 sing N N 111 HIS CG ND1 sing Y N 112 HIS CG CD2 doub Y N 113 HIS ND1 CE1 doub Y N 114 HIS ND1 HD1 sing N N 115 HIS CD2 NE2 sing Y N 116 HIS CD2 HD2 sing N N 117 HIS CE1 NE2 sing Y N 118 HIS CE1 HE1 sing N N 119 HIS NE2 HE2 sing N N 120 HIS OXT HXT sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 ILE N CA sing N N 124 ILE N H sing N N 125 ILE N H2 sing N N 126 ILE CA C sing N N 127 ILE CA CB sing N N 128 ILE CA HA sing N N 129 ILE C O doub N N 130 ILE C OXT sing N N 131 ILE CB CG1 sing N N 132 ILE CB CG2 sing N N 133 ILE CB HB sing N N 134 ILE CG1 CD1 sing N N 135 ILE CG1 HG12 sing N N 136 ILE CG1 HG13 sing N N 137 ILE CG2 HG21 sing N N 138 ILE CG2 HG22 sing N N 139 ILE CG2 HG23 sing N N 140 ILE CD1 HD11 sing N N 141 ILE CD1 HD12 sing N N 142 ILE CD1 HD13 sing N N 143 ILE OXT HXT sing N N 144 LEU N CA sing N N 145 LEU N H sing N N 146 LEU N H2 sing N N 147 LEU CA C sing N N 148 LEU CA CB sing N N 149 LEU CA HA sing N N 150 LEU C O doub N N 151 LEU C OXT sing N N 152 LEU CB CG sing N N 153 LEU CB HB2 sing N N 154 LEU CB HB3 sing N N 155 LEU CG CD1 sing N N 156 LEU CG CD2 sing N N 157 LEU CG HG sing N N 158 LEU CD1 HD11 sing N N 159 LEU CD1 HD12 sing N N 160 LEU CD1 HD13 sing N N 161 LEU CD2 HD21 sing N N 162 LEU CD2 HD22 sing N N 163 LEU CD2 HD23 sing N N 164 LEU OXT HXT sing N N 165 LYS N CA sing N N 166 LYS N H sing N N 167 LYS N H2 sing N N 168 LYS CA C sing N N 169 LYS CA CB sing N N 170 LYS CA HA sing N N 171 LYS C O doub N N 172 LYS C OXT sing N N 173 LYS CB CG sing N N 174 LYS CB HB2 sing N N 175 LYS CB HB3 sing N N 176 LYS CG CD sing N N 177 LYS CG HG2 sing N N 178 LYS CG HG3 sing N N 179 LYS CD CE sing N N 180 LYS CD HD2 sing N N 181 LYS CD HD3 sing N N 182 LYS CE NZ sing N N 183 LYS CE HE2 sing N N 184 LYS CE HE3 sing N N 185 LYS NZ HZ1 sing N N 186 LYS NZ HZ2 sing N N 187 LYS NZ HZ3 sing N N 188 LYS OXT HXT sing N N 189 SER N CA sing N N 190 SER N H sing N N 191 SER N H2 sing N N 192 SER CA C sing N N 193 SER CA CB sing N N 194 SER CA HA sing N N 195 SER C O doub N N 196 SER C OXT sing N N 197 SER CB OG sing N N 198 SER CB HB2 sing N N 199 SER CB HB3 sing N N 200 SER OG HG sing N N 201 SER OXT HXT sing N N 202 THR N CA sing N N 203 THR N H sing N N 204 THR N H2 sing N N 205 THR CA C sing N N 206 THR CA CB sing N N 207 THR CA HA sing N N 208 THR C O doub N N 209 THR C OXT sing N N 210 THR CB OG1 sing N N 211 THR CB CG2 sing N N 212 THR CB HB sing N N 213 THR OG1 HG1 sing N N 214 THR CG2 HG21 sing N N 215 THR CG2 HG22 sing N N 216 THR CG2 HG23 sing N N 217 THR OXT HXT sing N N 218 TRP N CA sing N N 219 TRP N H sing N N 220 TRP N H2 sing N N 221 TRP CA C sing N N 222 TRP CA CB sing N N 223 TRP CA HA sing N N 224 TRP C O doub N N 225 TRP C OXT sing N N 226 TRP CB CG sing N N 227 TRP CB HB2 sing N N 228 TRP CB HB3 sing N N 229 TRP CG CD1 doub Y N 230 TRP CG CD2 sing Y N 231 TRP CD1 NE1 sing Y N 232 TRP CD1 HD1 sing N N 233 TRP CD2 CE2 doub Y N 234 TRP CD2 CE3 sing Y N 235 TRP NE1 CE2 sing Y N 236 TRP NE1 HE1 sing N N 237 TRP CE2 CZ2 sing Y N 238 TRP CE3 CZ3 doub Y N 239 TRP CE3 HE3 sing N N 240 TRP CZ2 CH2 doub Y N 241 TRP CZ2 HZ2 sing N N 242 TRP CZ3 CH2 sing Y N 243 TRP CZ3 HZ3 sing N N 244 TRP CH2 HH2 sing N N 245 TRP OXT HXT sing N N 246 TYR N CA sing N N 247 TYR N H sing N N 248 TYR N H2 sing N N 249 TYR CA C sing N N 250 TYR CA CB sing N N 251 TYR CA HA sing N N 252 TYR C O doub N N 253 TYR C OXT sing N N 254 TYR CB CG sing N N 255 TYR CB HB2 sing N N 256 TYR CB HB3 sing N N 257 TYR CG CD1 doub Y N 258 TYR CG CD2 sing Y N 259 TYR CD1 CE1 sing Y N 260 TYR CD1 HD1 sing N N 261 TYR CD2 CE2 doub Y N 262 TYR CD2 HD2 sing N N 263 TYR CE1 CZ doub Y N 264 TYR CE1 HE1 sing N N 265 TYR CE2 CZ sing Y N 266 TYR CE2 HE2 sing N N 267 TYR CZ OH sing N N 268 TYR OH HH sing N N 269 TYR OXT HXT sing N N 270 VAL N CA sing N N 271 VAL N H sing N N 272 VAL N H2 sing N N 273 VAL CA C sing N N 274 VAL CA CB sing N N 275 VAL CA HA sing N N 276 VAL C O doub N N 277 VAL C OXT sing N N 278 VAL CB CG1 sing N N 279 VAL CB CG2 sing N N 280 VAL CB HB sing N N 281 VAL CG1 HG11 sing N N 282 VAL CG1 HG12 sing N N 283 VAL CG1 HG13 sing N N 284 VAL CG2 HG21 sing N N 285 VAL CG2 HG22 sing N N 286 VAL CG2 HG23 sing N N 287 VAL OXT HXT sing N N 288 # _atom_sites.entry_id 2ZFC _atom_sites.fract_transf_matrix[1][1] 0.009655 _atom_sites.fract_transf_matrix[1][2] 0.005575 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011149 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022274 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_