HEADER DE NOVO PROTEIN 21-JAN-08 2ZGD TITLE ASN-HYDROXYLATION STABILISES THE ANKYRIN REPEAT DOMAIN FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3 REPEAT SYNTHETIC ANKYRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETICALLY DESIGNED CONSTRUCT KEYWDS ANKYRIN REPEAT, HYDROXYLATED, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 5 01-NOV-23 2ZGD 1 REMARK LINK REVDAT 4 11-OCT-17 2ZGD 1 REMARK REVDAT 3 27-OCT-09 2ZGD 1 JRNL REVDAT 2 24-FEB-09 2ZGD 1 VERSN REVDAT 1 05-FEB-08 2ZGD 0 JRNL AUTH L.KELLY,M.A.MCDONOUGH,M.L.COLEMAN,P.J.RATCLIFFE, JRNL AUTH 2 C.J.SCHOFIELD JRNL TITL ASPARAGINE BETA-HYDROXYLATION STABILIZES THE ANKYRIN REPEAT JRNL TITL 2 DOMAIN FOLD JRNL REF MOL BIOSYST V. 5 52 2009 JRNL REFN ISSN 1742-206X JRNL PMID 19081931 JRNL DOI 10.1039/B815271C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.L.COLEMAN,M.A.MCDONOUGH,K.S.HEWITSON,C.COLES,J.MECINOVIC, REMARK 1 AUTH 2 M.EDELMANN,K.M.COOK,M.E.COCKMAN,D.E.LANCASTER,B.M.KESSLER, REMARK 1 AUTH 3 N.J.OLDHAM,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL ASPARAGINYL HYDROXYLATION OF THE NOTCH ANKYRIN REPEAT DOMAIN REMARK 1 TITL 2 BY FACTOR INHIBITING HYPOXIA-INDUCIBLE FACTOR REMARK 1 REF J.BIOL.CHEM. V. 282 24027 2007 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 17573339 REMARK 1 DOI 10.1074/JBC.M704102200 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.E.COCKMAN,D.E.LANCASTER,I.P.STOLZE,K.S.HEWITSON, REMARK 1 AUTH 2 M.A.MCDONOUGH,M.L.COLEMAN,C.H.COLES,X.YU,R.T.HAY,S.C.LEY, REMARK 1 AUTH 3 C.W.PUGH,N.J.OLDHAM,N.MASSON,C.J.SCHOFIELD,P.J.RATCLIFFE REMARK 1 TITL POSTTRANSLATIONAL HYDROXYLATION OF ANKYRIN REPEATS IN REMARK 1 TITL 2 IKAPPAB PROTEINS BY THE HYPOXIA-INDUCIBLE FACTOR (HIF) REMARK 1 TITL 3 ASPARAGINYL HYDROXYLASE, FACTOR INHIBITING HIF (FIH) REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 103 14767 2006 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17003112 REMARK 1 DOI 10.1073/PNAS.0606877103 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 115538.633 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 6875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1013 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 90 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.89000 REMARK 3 B22 (A**2) : -1.89000 REMARK 3 B33 (A**2) : 3.79000 REMARK 3 B12 (A**2) : -1.76000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 70.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ZGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000027937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1N0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 100MM NA ACETATE PH 4.6, REMARK 280 100MM CDCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.36267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.72533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.72533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.36267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.36267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 5 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 6 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 22 OG REMARK 470 LYS A 53 CE NZ REMARK 470 LYS A 55 CD CE NZ REMARK 470 ASN A 56 ND2 REMARK 470 GLU A 78 OE1 REMARK 470 LYS A 88 CD CE NZ REMARK 470 PHE A 89 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 103 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1050 O HOH A 1066 1.74 REMARK 500 ND1 HIS A 69 O HOH A 1066 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1047 O HOH A 1047 6555 1.93 REMARK 500 O HOH A 1065 O HOH A 1065 6555 2.08 REMARK 500 O HOH A 1020 O HOH A 1065 6555 2.11 REMARK 500 OD1 ASP A 95 CD CD A 410 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 -169.63 -67.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 414 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASP A 23 OD2 53.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 410 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 OE2 REMARK 620 2 GLN A 36 OE1 109.3 REMARK 620 3 GLU A 39 OE1 92.5 95.9 REMARK 620 4 GLU A 39 OE2 146.9 79.5 54.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 413 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 HOH A1046 O 125.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 411 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 107 OE1 REMARK 620 2 GLU A 107 OE2 53.0 REMARK 620 3 HOH A1018 O 91.4 91.5 REMARK 620 4 HOH A1019 O 87.2 82.6 173.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZGG RELATED DB: PDB REMARK 900 THE SAME PROTEIN, UNHYDROXYLATED ASN 84 DBREF 2ZGD A 1 110 PDB 2ZGD 2ZGD 1 110 SEQRES 1 A 110 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 110 VAL PRO ARG GLY SER HIS MET GLY SER ASP LEU GLY LYS SEQRES 3 A 110 LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP GLU SEQRES 4 A 110 VAL ARG ILE LEU MET ALA ASN GLY ALA ASP VAL ALA ALA SEQRES 5 A 110 LYS ASP LYS ASN GLY SER THR PRO LEU HIS LEU ALA ALA SEQRES 6 A 110 ARG ASN GLY HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU SEQRES 7 A 110 ALA GLY ALA ASP VAL AHB ALA GLN ASP LYS PHE GLY LYS SEQRES 8 A 110 THR ALA PHE ASP ILE SER ILE ASP ASN GLY ASN GLU ASP SEQRES 9 A 110 LEU ALA GLU ILE LEU GLN MODRES 2ZGD AHB A 84 ASN BETA-HYDROXYASPARAGINE HET AHB A 84 9 HET CD A 410 1 HET CD A 411 1 HET CD A 412 1 HET CD A 413 1 HET CD A 414 1 HET CL A 415 1 HET CL A 416 1 HETNAM AHB BETA-HYDROXYASPARAGINE HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 1 AHB C4 H8 N2 O4 FORMUL 2 CD 5(CD 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *77(H2 O) HELIX 1 1 ASP A 23 GLY A 35 1 13 HELIX 2 2 GLN A 36 ASN A 46 1 11 HELIX 3 3 THR A 59 ASN A 67 1 9 HELIX 4 4 HIS A 69 ALA A 79 1 11 HELIX 5 5 THR A 92 GLY A 101 1 10 HELIX 6 6 ASN A 102 GLN A 110 1 9 LINK C VAL A 83 N AHB A 84 1555 1555 1.33 LINK C AHB A 84 N ALA A 85 1555 1555 1.33 LINK OD1 ASP A 23 CD CD A 414 1555 1555 2.50 LINK OD2 ASP A 23 CD CD A 414 1555 1555 2.39 LINK OE2 GLU A 30 CD CD A 410 1555 1555 2.26 LINK OE1 GLN A 36 CD CD A 410 1555 1555 2.13 LINK OD2 ASP A 38 CD CD A 413 1555 1555 2.29 LINK OE1 GLU A 39 CD CD A 410 1555 1555 2.21 LINK OE2 GLU A 39 CD CD A 410 1555 1555 2.52 LINK OE1 GLU A 107 CD CD A 411 1555 1555 2.36 LINK OE2 GLU A 107 CD CD A 411 1555 1555 2.49 LINK CD CD A 411 O HOH A1018 1555 1555 2.49 LINK CD CD A 411 O HOH A1019 1555 1555 2.29 LINK CD CD A 412 O HOH A1020 1555 1555 2.50 LINK CD CD A 413 O HOH A1046 1555 1555 2.13 SITE 1 AC1 4 GLU A 30 GLN A 36 GLU A 39 ASP A 95 SITE 1 AC2 5 HIS A 7 HIS A 9 GLU A 107 HOH A1018 SITE 2 AC2 5 HOH A1019 SITE 1 AC3 5 CL A 415 HOH A1020 HOH A1050 HOH A1065 SITE 2 AC3 5 HOH A1066 SITE 1 AC4 4 ASP A 37 ASP A 38 CL A 416 HOH A1046 SITE 1 AC5 3 ASP A 23 HOH A1039 HOH A1045 SITE 1 AC6 6 HIS A 69 GLU A 71 VAL A 72 CD A 412 SITE 2 AC6 6 HOH A1065 HOH A1066 SITE 1 AC7 5 GLN A 36 ASP A 38 GLU A 39 CD A 413 SITE 2 AC7 5 HOH A1046 CRYST1 48.887 48.887 67.088 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020455 0.011810 0.000000 0.00000 SCALE2 0.000000 0.023620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014906 0.00000