data_2ZHW # _entry.id 2ZHW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZHW pdb_00002zhw 10.2210/pdb2zhw/pdb RCSB RCSB027992 ? ? WWPDB D_1000027992 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BIU 'Thrombin inhibitor complex' unspecified PDB 3BIV 'Thrombin inhibitor complex' unspecified PDB 2ZHE 'Thrombin inhibitor complex' unspecified PDB 2ZDA 'Thrombin inhibitor complex' unspecified PDB 2ZHD 'Bovine trypsin inhibitor complex' unspecified PDB 2ZFS 'Bovine trypsin inhibitor complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZHW _pdbx_database_status.recvd_initial_deposition_date 2008-02-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brandt, T.' 1 'Baum, B.' 2 'Heine, A.' 3 'Klebe, G.' 4 # _citation.id primary _citation.title 'Exploring thrombin S3 pocket' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brandt, T.' 1 ? primary 'Baum, B.' 2 ? primary 'Hangauer, D.' 3 ? primary 'Heine, A.' 4 ? primary 'Klebe, G.' 5 ? # _cell.entry_id 2ZHW _cell.length_a 68.9 _cell.length_b 71.5 _cell.length_c 71.3 _cell.angle_alpha 90.0 _cell.angle_beta 99.1 _cell.angle_gamma 90.0 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZHW _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn 'Hirudin variant-2' 1534.554 1 ? ? 'Residues 53-64' ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide' 399.530 1 ? ? ? ? 6 water nat water 18.015 101 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes 'NGDFEEIPEE(TYS)L' NGDFEEIPEEYL I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 ASN n 3 2 GLY n 3 3 ASP n 3 4 PHE n 3 5 GLU n 3 6 GLU n 3 7 ILE n 3 8 PRO n 3 9 GLU n 3 10 GLU n 3 11 TYS n 3 12 LEU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? Human 'Homo sapiens' 9606 ? ? ? Plasma ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? Human 'Homo sapiens' 9606 ? ? ? Plasma ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Hirudo medicinalis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 6421 _pdbx_entity_src_syn.details 'Synthetic fragment of hirudin from Hirudo Medicinalis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? 3 UNP ITH3_HIRME P09945 3 NGDFEEIPEEYL 60 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZHW L 1 H 36 N P00734 328 ? 363 ? 1 14 2 2 2ZHW H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 2ZHW I 1 ? 12 ? P09945 60 ? 71 ? 53 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 12U non-polymer . 'N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide' '(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide' 'C22 H33 N5 O2' 399.530 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZHW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 49.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Phosphate buffer, sodium chloride, PEG8000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-01-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2ZHW _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.02 _reflns.d_resolution_low 50 _reflns.number_all 21170 _reflns.number_obs 21170 _reflns.percent_possible_obs 93.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.B_iso_Wilson_estimate 35.5 _reflns.pdbx_redundancy 2.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.02 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 73.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.383 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 832 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ZHW _refine.ls_number_reflns_obs 14778 _refine.ls_number_reflns_all 19536 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 2.02 _refine.ls_percent_reflns_obs 87.6 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.292 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 960 _refine.ls_number_parameters 9723 _refine.ls_number_restraints 9702 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB entry 1H8D' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZHW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 2271.00 _refine_analyze.occupancy_sum_non_hydrogen 2427.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2302 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 2427 _refine_hist.d_res_high 2.02 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0248 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.089 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2ZHW _pdbx_refine.R_factor_all_no_cutoff 0.2056 _pdbx_refine.R_factor_obs_no_cutoff 0.202 _pdbx_refine.free_R_factor_no_cutoff 0.2916 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 4.9 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 960 _pdbx_refine.R_factor_all_4sig_cutoff 0.1876 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1839 _pdbx_refine.free_R_factor_4sig_cutoff 0.2687 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 4.9 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 717 _pdbx_refine.number_reflns_obs_4sig_cutoff 14778 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2ZHW _struct.title 'Exploring thrombin S3 pocket' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZHW _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;Blood coagulation, Hydrolase inhibitors, Acute phase, Cleavage on pair of basic residues, Disease mutation, Gamma-carboxyglutamic acid, Glycoprotein, Kringle, Protease, Secreted, Serine protease, Protease inhibitor, Serine protease inhibitor, Sulfation, HYDROLASE-HYDROLASE INHIBITOR COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 15 ? SER A 19 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P2 2 THR A 24 B TYR A 32 J THR L 14 TYR L 14 1 ? 9 HELX_P HELX_P3 3 ALA B 41 ? CYS B 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P4 4 PRO B 48 B ASP B 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P5 5 THR B 55 I ASN B 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P8 8 LEU B 246 ? PHE B 257 ? LEU H 234 PHE H 245 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale both ? C GLU 10 C ? ? ? 1_555 C TYS 11 N ? ? I GLU 62 I TYS 63 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? C TYS 11 C ? ? ? 1_555 C LEU 12 N ? ? I TYS 63 I LEU 64 1_555 ? ? ? ? ? ? ? 1.331 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER H 20 ASP H 21 A 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 A 3 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 A 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 A 5 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 A 6 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 A 7 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 B 1 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 B 2 GLU B 25 ? LEU B 32 ? GLU H 39 LEU H 46 B 3 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 4 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 5 LYS B 77 ? ILE B 86 ? LYS H 81 ILE H 90 B 6 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 B 7 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 C 1 LEU B 46 ? TYR B 47 A LEU H 60 TYR H 60 C 2 LYS B 52 F ASN B 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER H 20 O VAL B 162 ? O VAL H 157 A 2 3 O VAL B 163 ? O VAL H 158 N VAL B 138 ? N VAL H 138 A 3 4 N ARG B 137 ? N ARG H 137 O VAL B 210 ? O VAL H 200 A 4 5 N PHE B 209 ? N PHE H 199 O GLY B 223 ? O GLY H 211 A 5 6 N TRP B 227 ? N TRP H 215 O PHE B 239 ? O PHE H 227 A 6 7 O TYR B 240 ? O TYR H 228 N PHE B 186 ? N PHE H 181 B 1 2 N LEU B 18 ? N LEU H 33 O LEU B 27 ? O LEU H 41 B 2 3 N SER B 31 ? N SER H 45 O LEU B 39 ? O LEU H 53 B 3 4 N VAL B 38 ? N VAL H 52 O MET B 103 ? O MET H 106 B 4 5 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 B 5 6 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 B 6 7 O ARG B 62 ? O ARG H 67 N MET B 17 ? N MET H 32 C 1 2 N TYR B 47 A N TYR H 60 O LYS B 52 F O LYS H 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software H NA 601 ? 3 'BINDING SITE FOR RESIDUE NA H 601' AC2 Software H NA 602 ? 5 'BINDING SITE FOR RESIDUE NA H 602' AC3 Software H 12U 501 ? 12 'BINDING SITE FOR RESIDUE 12U H 501' AC4 Software ? ? ? ? 13 'BINDING SITE FOR CHAIN I OF HIRUDIN VARIANT-2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS B 174 ? LYS H 169 . ? 1_555 ? 2 AC1 3 THR B 177 ? THR H 172 . ? 1_555 ? 3 AC1 3 PHE B 215 A PHE H 204 . ? 4_546 ? 4 AC2 5 ASP B 232 ? ASP H 221 . ? 1_555 ? 5 AC2 5 ARG B 233 A ARG H 221 . ? 1_555 ? 6 AC2 5 LYS B 236 ? LYS H 224 . ? 1_555 ? 7 AC2 5 HOH H . ? HOH H 1045 . ? 1_555 ? 8 AC2 5 HOH H . ? HOH H 1085 . ? 1_555 ? 9 AC3 12 HIS B 43 ? HIS H 57 . ? 1_555 ? 10 AC3 12 TYR B 47 A TYR H 60 . ? 1_555 ? 11 AC3 12 TRP B 50 D TRP H 60 . ? 1_555 ? 12 AC3 12 ASP B 199 ? ASP H 189 . ? 1_555 ? 13 AC3 12 ALA B 200 ? ALA H 190 . ? 1_555 ? 14 AC3 12 SER B 205 ? SER H 195 . ? 1_555 ? 15 AC3 12 SER B 226 ? SER H 214 . ? 1_555 ? 16 AC3 12 TRP B 227 ? TRP H 215 . ? 1_555 ? 17 AC3 12 GLY B 228 ? GLY H 216 . ? 1_555 ? 18 AC3 12 GLY B 230 ? GLY H 219 . ? 1_555 ? 19 AC3 12 GLY B 238 ? GLY H 226 . ? 1_555 ? 20 AC3 12 HOH H . ? HOH H 1012 . ? 1_555 ? 21 AC4 13 PHE B 19 ? PHE H 34 . ? 1_555 ? 22 AC4 13 LEU B 60 ? LEU H 65 . ? 1_555 ? 23 AC4 13 ARG B 62 ? ARG H 67 . ? 1_555 ? 24 AC4 13 ARG B 68 ? ARG H 73 . ? 1_555 ? 25 AC4 13 THR B 69 ? THR H 74 . ? 1_555 ? 26 AC4 13 ARG B 70 ? ARG H 75 . ? 1_555 ? 27 AC4 13 TYR B 71 ? TYR H 76 . ? 1_555 ? 28 AC4 13 GLU B 76 ? GLU H 80 . ? 1_555 ? 29 AC4 13 LYS B 77 ? LYS H 81 . ? 1_555 ? 30 AC4 13 ILE B 78 ? ILE H 82 . ? 1_555 ? 31 AC4 13 MET B 80 ? MET H 84 . ? 1_555 ? 32 AC4 13 HOH H . ? HOH H 1022 . ? 1_555 ? 33 AC4 13 HOH I . ? HOH I 1066 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZHW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2ZHW _atom_sites.fract_transf_matrix[1][1] 0.014514 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002325 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013986 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014204 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? L H n A 1 2 PHE 2 1 ? ? ? L G n A 1 3 GLY 3 1 ? ? ? L F n A 1 4 SER 4 1 ? ? ? L E n A 1 5 GLY 5 1 ? ? ? L D n A 1 6 GLU 6 1 ? ? ? L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 ? ? ? L L n A 1 35 GLY 35 14 ? ? ? L M n A 1 36 ARG 36 14 ? ? ? L N n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 146 ? ? ? H A n B 2 148 TRP 148 146 ? ? ? H B n B 2 149 THR 149 146 ? ? ? H C n B 2 150 ALA 150 146 ? ? ? H D n B 2 151 ASN 151 146 ? ? ? H E n B 2 152 VAL 152 146 ? ? ? H F n B 2 153 GLY 153 146 ? ? ? H G n B 2 154 LYS 154 146 ? ? ? H H n B 2 155 GLY 155 150 150 GLY ALA H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 ? ? ? H . n B 2 259 GLU 259 247 ? ? ? H . n C 3 1 ASN 1 53 ? ? ? I . n C 3 2 GLY 2 54 ? ? ? I . n C 3 3 ASP 3 55 55 ASP ASP I . n C 3 4 PHE 4 56 56 PHE PHE I . n C 3 5 GLU 5 57 57 GLU GLU I . n C 3 6 GLU 6 58 58 GLU GLU I . n C 3 7 ILE 7 59 59 ILE ILE I . n C 3 8 PRO 8 60 60 PRO PRO I . n C 3 9 GLU 9 61 61 GLU GLU I . n C 3 10 GLU 10 62 62 GLU GLU I . n C 3 11 TYS 11 63 63 TYS TYS I . n C 3 12 LEU 12 64 64 LEU LEU I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA 1 601 601 NA NA H . E 4 NA 1 602 602 NA NA H . F 5 12U 1 501 501 12U 12U H . G 6 HOH 1 1006 1006 HOH HOH L . G 6 HOH 2 1018 1018 HOH HOH L . G 6 HOH 3 1024 1024 HOH HOH L . G 6 HOH 4 1027 1027 HOH HOH L . G 6 HOH 5 1044 1044 HOH HOH L . G 6 HOH 6 1053 1053 HOH HOH L . G 6 HOH 7 1058 1058 HOH HOH L . G 6 HOH 8 1061 1061 HOH HOH L . G 6 HOH 9 1073 1073 HOH HOH L . G 6 HOH 10 1083 1083 HOH HOH L . H 6 HOH 1 1001 1001 HOH HOH H . H 6 HOH 2 1002 1002 HOH HOH H . H 6 HOH 3 1003 1003 HOH HOH H . H 6 HOH 4 1004 1004 HOH HOH H . H 6 HOH 5 1005 1005 HOH HOH H . H 6 HOH 6 1007 1007 HOH HOH H . H 6 HOH 7 1008 1008 HOH HOH H . H 6 HOH 8 1009 1009 HOH HOH H . H 6 HOH 9 1010 1010 HOH HOH H . H 6 HOH 10 1011 1011 HOH HOH H . H 6 HOH 11 1012 1012 HOH HOH H . H 6 HOH 12 1013 1013 HOH HOH H . H 6 HOH 13 1014 1014 HOH HOH H . H 6 HOH 14 1015 1015 HOH HOH H . H 6 HOH 15 1016 1016 HOH HOH H . H 6 HOH 16 1017 1017 HOH HOH H . H 6 HOH 17 1019 1019 HOH HOH H . H 6 HOH 18 1020 1020 HOH HOH H . H 6 HOH 19 1021 1021 HOH HOH H . H 6 HOH 20 1022 1022 HOH HOH H . H 6 HOH 21 1023 1023 HOH HOH H . H 6 HOH 22 1025 1025 HOH HOH H . H 6 HOH 23 1026 1026 HOH HOH H . H 6 HOH 24 1028 1028 HOH HOH H . H 6 HOH 25 1029 1029 HOH HOH H . H 6 HOH 26 1030 1030 HOH HOH H . H 6 HOH 27 1031 1031 HOH HOH H . H 6 HOH 28 1032 1032 HOH HOH H . H 6 HOH 29 1033 1033 HOH HOH H . H 6 HOH 30 1034 1034 HOH HOH H . H 6 HOH 31 1035 1035 HOH HOH H . H 6 HOH 32 1036 1036 HOH HOH H . H 6 HOH 33 1037 1037 HOH HOH H . H 6 HOH 34 1038 1038 HOH HOH H . H 6 HOH 35 1039 1039 HOH HOH H . H 6 HOH 36 1040 1040 HOH HOH H . H 6 HOH 37 1041 1041 HOH HOH H . H 6 HOH 38 1042 1042 HOH HOH H . H 6 HOH 39 1043 1043 HOH HOH H . H 6 HOH 40 1045 1045 HOH HOH H . H 6 HOH 41 1046 1046 HOH HOH H . H 6 HOH 42 1047 1047 HOH HOH H . H 6 HOH 43 1048 1048 HOH HOH H . H 6 HOH 44 1049 1049 HOH HOH H . H 6 HOH 45 1050 1050 HOH HOH H . H 6 HOH 46 1051 1051 HOH HOH H . H 6 HOH 47 1052 1052 HOH HOH H . H 6 HOH 48 1054 1054 HOH HOH H . H 6 HOH 49 1055 1055 HOH HOH H . H 6 HOH 50 1056 1056 HOH HOH H . H 6 HOH 51 1057 1057 HOH HOH H . H 6 HOH 52 1059 1059 HOH HOH H . H 6 HOH 53 1060 1060 HOH HOH H . H 6 HOH 54 1062 1062 HOH HOH H . H 6 HOH 55 1063 1063 HOH HOH H . H 6 HOH 56 1064 1064 HOH HOH H . H 6 HOH 57 1065 1065 HOH HOH H . H 6 HOH 58 1067 1067 HOH HOH H . H 6 HOH 59 1068 1068 HOH HOH H . H 6 HOH 60 1069 1069 HOH HOH H . H 6 HOH 61 1071 1071 HOH HOH H . H 6 HOH 62 1072 1072 HOH HOH H . H 6 HOH 63 1074 1074 HOH HOH H . H 6 HOH 64 1075 1075 HOH HOH H . H 6 HOH 65 1076 1076 HOH HOH H . H 6 HOH 66 1077 1077 HOH HOH H . H 6 HOH 67 1078 1078 HOH HOH H . H 6 HOH 68 1079 1079 HOH HOH H . H 6 HOH 69 1080 1080 HOH HOH H . H 6 HOH 70 1081 1081 HOH HOH H . H 6 HOH 71 1082 1082 HOH HOH H . H 6 HOH 72 1084 1084 HOH HOH H . H 6 HOH 73 1085 1085 HOH HOH H . H 6 HOH 74 1086 1086 HOH HOH H . H 6 HOH 75 1087 1087 HOH HOH H . H 6 HOH 76 1088 1088 HOH HOH H . H 6 HOH 77 1089 1089 HOH HOH H . H 6 HOH 78 1090 1090 HOH HOH H . H 6 HOH 79 1091 1091 HOH HOH H . H 6 HOH 80 1092 1092 HOH HOH H . H 6 HOH 81 1093 1093 HOH HOH H . H 6 HOH 82 1094 1094 HOH HOH H . H 6 HOH 83 1095 1095 HOH HOH H . H 6 HOH 84 1096 1096 HOH HOH H . H 6 HOH 85 1097 1097 HOH HOH H . H 6 HOH 86 1098 1098 HOH HOH H . H 6 HOH 87 1099 1099 HOH HOH H . H 6 HOH 88 1100 1100 HOH HOH H . H 6 HOH 89 1101 1101 HOH HOH H . I 6 HOH 1 1066 1066 HOH HOH I . I 6 HOH 2 1070 1070 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_000588 _pdbx_molecule_features.name 'N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class 'Thrombin inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000588 _pdbx_molecule.asym_id F # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id TYS _pdbx_struct_mod_residue.label_seq_id 11 _pdbx_struct_mod_residue.auth_asym_id I _pdbx_struct_mod_residue.auth_comp_id TYS _pdbx_struct_mod_residue.auth_seq_id 63 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-SULFO-L-TYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3460 ? 1 MORE -32 ? 1 'SSA (A^2)' 12250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 H HOH 1002 ? H HOH . 2 1 H HOH 1056 ? H HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2016-05-25 5 'Structure model' 1 4 2023-11-01 6 'Structure model' 1 5 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Source and taxonomy' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Refinement description' 13 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 6 'Structure model' '_chem_comp_atom.atom_id' 8 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 CrystalClear 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 CNS phasing . ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE H ARG 35 ? ? CZ H ARG 35 ? ? NH1 H ARG 35 ? ? 123.56 120.30 3.26 0.50 N 2 1 NE H ARG 187 ? ? CZ H ARG 187 ? ? NH1 H ARG 187 ? ? 123.41 120.30 3.11 0.50 N 3 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH1 H ARG 206 ? ? 123.61 120.30 3.31 0.50 N 4 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH2 H ARG 206 ? ? 117.13 120.30 -3.17 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 7 ? ? -127.20 -87.49 2 1 GLU H 39 ? ? 176.03 158.55 3 1 ALA H 44 ? ? 177.04 177.24 4 1 SER H 48 ? ? -171.30 -159.54 5 1 ARG H 50 ? ? -149.61 26.85 6 1 TYR H 60 A ? -159.96 80.88 7 1 HIS H 71 ? ? -127.23 -56.92 8 1 GLU H 77 ? ? -64.07 85.00 9 1 ASN H 78 ? ? 72.43 -11.44 10 1 LYS H 87 ? ? -176.28 125.46 11 1 GLU H 186 B ? -64.95 3.75 12 1 SER H 214 ? ? -124.05 -61.66 13 1 GLU I 58 ? ? -44.49 107.37 14 1 PRO I 60 ? ? -48.13 154.96 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id H _pdbx_validate_chiral.auth_comp_id 12U _pdbx_validate_chiral.auth_seq_id 501 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H GLN 38 ? CG ? B GLN 24 CG 2 1 Y 1 H GLN 38 ? CD ? B GLN 24 CD 3 1 Y 1 H GLN 38 ? OE1 ? B GLN 24 OE1 4 1 Y 1 H GLN 38 ? NE2 ? B GLN 24 NE2 5 1 Y 1 H ARG 75 ? CG ? B ARG 70 CG 6 1 Y 1 H ARG 75 ? CD ? B ARG 70 CD 7 1 Y 1 H ARG 75 ? NE ? B ARG 70 NE 8 1 Y 1 H ARG 75 ? CZ ? B ARG 70 CZ 9 1 Y 1 H ARG 75 ? NH1 ? B ARG 70 NH1 10 1 Y 1 H ARG 75 ? NH2 ? B ARG 70 NH2 11 1 Y 1 H GLU 86 ? CG ? B GLU 82 CG 12 1 Y 1 H GLU 86 ? CD ? B GLU 82 CD 13 1 Y 1 H GLU 86 ? OE1 ? B GLU 82 OE1 14 1 Y 1 H GLU 86 ? OE2 ? B GLU 82 OE2 15 1 Y 1 H LYS 145 ? CG ? B LYS 145 CG 16 1 Y 1 H LYS 145 ? CD ? B LYS 145 CD 17 1 Y 1 H LYS 145 ? CE ? B LYS 145 CE 18 1 Y 1 H LYS 145 ? NZ ? B LYS 145 NZ 19 1 Y 1 H ASP 186 A CG ? B ASP 193 CG 20 1 Y 1 H ASP 186 A OD1 ? B ASP 193 OD1 21 1 Y 1 H ASP 186 A OD2 ? B ASP 193 OD2 22 1 Y 1 H GLN 244 ? CG ? B GLN 256 CG 23 1 Y 1 H GLN 244 ? CD ? B GLN 256 CD 24 1 Y 1 H GLN 244 ? OE1 ? B GLN 256 OE1 25 1 Y 1 H GLN 244 ? NE2 ? B GLN 256 NE2 26 1 Y 1 I GLU 58 ? CG ? C GLU 6 CG 27 1 Y 1 I GLU 58 ? CD ? C GLU 6 CD 28 1 Y 1 I GLU 58 ? OE1 ? C GLU 6 OE1 29 1 Y 1 I GLU 58 ? OE2 ? C GLU 6 OE2 30 1 Y 1 I GLU 61 ? CG ? C GLU 9 CG 31 1 Y 1 I GLU 61 ? CD ? C GLU 9 CD 32 1 Y 1 I GLU 61 ? OE1 ? C GLU 9 OE1 33 1 Y 1 I GLU 61 ? OE2 ? C GLU 9 OE2 34 1 N 1 H 12U 501 ? C49 ? F 12U 1 C49 35 1 N 1 H 12U 501 ? C48 ? F 12U 1 C48 36 1 N 1 H 12U 501 ? C47 ? F 12U 1 C47 37 1 N 1 H 12U 501 ? C46 ? F 12U 1 C46 38 1 N 1 H 12U 501 ? C52 ? F 12U 1 C52 39 1 N 1 H 12U 501 ? C51 ? F 12U 1 C51 40 1 N 1 H 12U 501 ? C50 ? F 12U 1 C50 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR 1 H A THR 1 2 1 Y 1 L PHE 1 G A PHE 2 3 1 Y 1 L GLY 1 F A GLY 3 4 1 Y 1 L SER 1 E A SER 4 5 1 Y 1 L GLY 1 D A GLY 5 6 1 Y 1 L GLU 1 C A GLU 6 7 1 Y 1 L ASP 14 L A ASP 34 8 1 Y 1 L GLY 14 M A GLY 35 9 1 Y 1 L ARG 14 N A ARG 36 10 1 Y 1 H THR 146 A B THR 147 11 1 Y 1 H TRP 146 B B TRP 148 12 1 Y 1 H THR 146 C B THR 149 13 1 Y 1 H ALA 146 D B ALA 150 14 1 Y 1 H ASN 146 E B ASN 151 15 1 Y 1 H VAL 146 F B VAL 152 16 1 Y 1 H GLY 146 G B GLY 153 17 1 Y 1 H LYS 146 H B LYS 154 18 1 Y 1 H GLY 246 ? B GLY 258 19 1 Y 1 H GLU 247 ? B GLU 259 20 1 Y 1 I ASN 53 ? C ASN 1 21 1 Y 1 I GLY 54 ? C GLY 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 12U C14 C N N 1 12U O32 O N N 2 12U C5 C N N 3 12U N21 N N N 4 12U C49 C N N 5 12U C48 C N N 6 12U C47 C N N 7 12U C46 C N N 8 12U C52 C N N 9 12U C51 C N N 10 12U C50 C N N 11 12U N1 N N N 12 12U C1 C N S 13 12U C7 C N N 14 12U O22 O N N 15 12U C2 C N N 16 12U C3 C N N 17 12U C4 C N N 18 12U N23 N N N 19 12U C24 C N N 20 12U C25 C Y N 21 12U C30 C Y N 22 12U C29 C Y N 23 12U C28 C Y N 24 12U C9 C N N 25 12U N10 N N N 26 12U N11 N N N 27 12U C27 C Y N 28 12U C26 C Y N 29 12U H5 H N N 30 12U H5A H N N 31 12U HN21 H N N 32 12U H49 H N N 33 12U H48 H N N 34 12U H48A H N N 35 12U H47 H N N 36 12U H47A H N N 37 12U H46 H N N 38 12U H46A H N N 39 12U H52 H N N 40 12U H52A H N N 41 12U H51 H N N 42 12U H51A H N N 43 12U H50 H N N 44 12U H50A H N N 45 12U H1 H N N 46 12U H2 H N N 47 12U H2A H N N 48 12U H3 H N N 49 12U H3A H N N 50 12U H4 H N N 51 12U H4A H N N 52 12U HN23 H N N 53 12U H24 H N N 54 12U H24A H N N 55 12U H30 H N N 56 12U H29 H N N 57 12U HN10 H N N 58 12U HN11 H N N 59 12U HN1A H N N 60 12U H27 H N N 61 12U H26 H N N 62 ALA N N N N 63 ALA CA C N S 64 ALA C C N N 65 ALA O O N N 66 ALA CB C N N 67 ALA OXT O N N 68 ALA H H N N 69 ALA H2 H N N 70 ALA HA H N N 71 ALA HB1 H N N 72 ALA HB2 H N N 73 ALA HB3 H N N 74 ALA HXT H N N 75 ARG N N N N 76 ARG CA C N S 77 ARG C C N N 78 ARG O O N N 79 ARG CB C N N 80 ARG CG C N N 81 ARG CD C N N 82 ARG NE N N N 83 ARG CZ C N N 84 ARG NH1 N N N 85 ARG NH2 N N N 86 ARG OXT O N N 87 ARG H H N N 88 ARG H2 H N N 89 ARG HA H N N 90 ARG HB2 H N N 91 ARG HB3 H N N 92 ARG HG2 H N N 93 ARG HG3 H N N 94 ARG HD2 H N N 95 ARG HD3 H N N 96 ARG HE H N N 97 ARG HH11 H N N 98 ARG HH12 H N N 99 ARG HH21 H N N 100 ARG HH22 H N N 101 ARG HXT H N N 102 ASN N N N N 103 ASN CA C N S 104 ASN C C N N 105 ASN O O N N 106 ASN CB C N N 107 ASN CG C N N 108 ASN OD1 O N N 109 ASN ND2 N N N 110 ASN OXT O N N 111 ASN H H N N 112 ASN H2 H N N 113 ASN HA H N N 114 ASN HB2 H N N 115 ASN HB3 H N N 116 ASN HD21 H N N 117 ASN HD22 H N N 118 ASN HXT H N N 119 ASP N N N N 120 ASP CA C N S 121 ASP C C N N 122 ASP O O N N 123 ASP CB C N N 124 ASP CG C N N 125 ASP OD1 O N N 126 ASP OD2 O N N 127 ASP OXT O N N 128 ASP H H N N 129 ASP H2 H N N 130 ASP HA H N N 131 ASP HB2 H N N 132 ASP HB3 H N N 133 ASP HD2 H N N 134 ASP HXT H N N 135 CYS N N N N 136 CYS CA C N R 137 CYS C C N N 138 CYS O O N N 139 CYS CB C N N 140 CYS SG S N N 141 CYS OXT O N N 142 CYS H H N N 143 CYS H2 H N N 144 CYS HA H N N 145 CYS HB2 H N N 146 CYS HB3 H N N 147 CYS HG H N N 148 CYS HXT H N N 149 GLN N N N N 150 GLN CA C N S 151 GLN C C N N 152 GLN O O N N 153 GLN CB C N N 154 GLN CG C N N 155 GLN CD C N N 156 GLN OE1 O N N 157 GLN NE2 N N N 158 GLN OXT O N N 159 GLN H H N N 160 GLN H2 H N N 161 GLN HA H N N 162 GLN HB2 H N N 163 GLN HB3 H N N 164 GLN HG2 H N N 165 GLN HG3 H N N 166 GLN HE21 H N N 167 GLN HE22 H N N 168 GLN HXT H N N 169 GLU N N N N 170 GLU CA C N S 171 GLU C C N N 172 GLU O O N N 173 GLU CB C N N 174 GLU CG C N N 175 GLU CD C N N 176 GLU OE1 O N N 177 GLU OE2 O N N 178 GLU OXT O N N 179 GLU H H N N 180 GLU H2 H N N 181 GLU HA H N N 182 GLU HB2 H N N 183 GLU HB3 H N N 184 GLU HG2 H N N 185 GLU HG3 H N N 186 GLU HE2 H N N 187 GLU HXT H N N 188 GLY N N N N 189 GLY CA C N N 190 GLY C C N N 191 GLY O O N N 192 GLY OXT O N N 193 GLY H H N N 194 GLY H2 H N N 195 GLY HA2 H N N 196 GLY HA3 H N N 197 GLY HXT H N N 198 HIS N N N N 199 HIS CA C N S 200 HIS C C N N 201 HIS O O N N 202 HIS CB C N N 203 HIS CG C Y N 204 HIS ND1 N Y N 205 HIS CD2 C Y N 206 HIS CE1 C Y N 207 HIS NE2 N Y N 208 HIS OXT O N N 209 HIS H H N N 210 HIS H2 H N N 211 HIS HA H N N 212 HIS HB2 H N N 213 HIS HB3 H N N 214 HIS HD1 H N N 215 HIS HD2 H N N 216 HIS HE1 H N N 217 HIS HE2 H N N 218 HIS HXT H N N 219 HOH O O N N 220 HOH H1 H N N 221 HOH H2 H N N 222 ILE N N N N 223 ILE CA C N S 224 ILE C C N N 225 ILE O O N N 226 ILE CB C N S 227 ILE CG1 C N N 228 ILE CG2 C N N 229 ILE CD1 C N N 230 ILE OXT O N N 231 ILE H H N N 232 ILE H2 H N N 233 ILE HA H N N 234 ILE HB H N N 235 ILE HG12 H N N 236 ILE HG13 H N N 237 ILE HG21 H N N 238 ILE HG22 H N N 239 ILE HG23 H N N 240 ILE HD11 H N N 241 ILE HD12 H N N 242 ILE HD13 H N N 243 ILE HXT H N N 244 LEU N N N N 245 LEU CA C N S 246 LEU C C N N 247 LEU O O N N 248 LEU CB C N N 249 LEU CG C N N 250 LEU CD1 C N N 251 LEU CD2 C N N 252 LEU OXT O N N 253 LEU H H N N 254 LEU H2 H N N 255 LEU HA H N N 256 LEU HB2 H N N 257 LEU HB3 H N N 258 LEU HG H N N 259 LEU HD11 H N N 260 LEU HD12 H N N 261 LEU HD13 H N N 262 LEU HD21 H N N 263 LEU HD22 H N N 264 LEU HD23 H N N 265 LEU HXT H N N 266 LYS N N N N 267 LYS CA C N S 268 LYS C C N N 269 LYS O O N N 270 LYS CB C N N 271 LYS CG C N N 272 LYS CD C N N 273 LYS CE C N N 274 LYS NZ N N N 275 LYS OXT O N N 276 LYS H H N N 277 LYS H2 H N N 278 LYS HA H N N 279 LYS HB2 H N N 280 LYS HB3 H N N 281 LYS HG2 H N N 282 LYS HG3 H N N 283 LYS HD2 H N N 284 LYS HD3 H N N 285 LYS HE2 H N N 286 LYS HE3 H N N 287 LYS HZ1 H N N 288 LYS HZ2 H N N 289 LYS HZ3 H N N 290 LYS HXT H N N 291 MET N N N N 292 MET CA C N S 293 MET C C N N 294 MET O O N N 295 MET CB C N N 296 MET CG C N N 297 MET SD S N N 298 MET CE C N N 299 MET OXT O N N 300 MET H H N N 301 MET H2 H N N 302 MET HA H N N 303 MET HB2 H N N 304 MET HB3 H N N 305 MET HG2 H N N 306 MET HG3 H N N 307 MET HE1 H N N 308 MET HE2 H N N 309 MET HE3 H N N 310 MET HXT H N N 311 NA NA NA N N 312 PHE N N N N 313 PHE CA C N S 314 PHE C C N N 315 PHE O O N N 316 PHE CB C N N 317 PHE CG C Y N 318 PHE CD1 C Y N 319 PHE CD2 C Y N 320 PHE CE1 C Y N 321 PHE CE2 C Y N 322 PHE CZ C Y N 323 PHE OXT O N N 324 PHE H H N N 325 PHE H2 H N N 326 PHE HA H N N 327 PHE HB2 H N N 328 PHE HB3 H N N 329 PHE HD1 H N N 330 PHE HD2 H N N 331 PHE HE1 H N N 332 PHE HE2 H N N 333 PHE HZ H N N 334 PHE HXT H N N 335 PRO N N N N 336 PRO CA C N S 337 PRO C C N N 338 PRO O O N N 339 PRO CB C N N 340 PRO CG C N N 341 PRO CD C N N 342 PRO OXT O N N 343 PRO H H N N 344 PRO HA H N N 345 PRO HB2 H N N 346 PRO HB3 H N N 347 PRO HG2 H N N 348 PRO HG3 H N N 349 PRO HD2 H N N 350 PRO HD3 H N N 351 PRO HXT H N N 352 SER N N N N 353 SER CA C N S 354 SER C C N N 355 SER O O N N 356 SER CB C N N 357 SER OG O N N 358 SER OXT O N N 359 SER H H N N 360 SER H2 H N N 361 SER HA H N N 362 SER HB2 H N N 363 SER HB3 H N N 364 SER HG H N N 365 SER HXT H N N 366 THR N N N N 367 THR CA C N S 368 THR C C N N 369 THR O O N N 370 THR CB C N R 371 THR OG1 O N N 372 THR CG2 C N N 373 THR OXT O N N 374 THR H H N N 375 THR H2 H N N 376 THR HA H N N 377 THR HB H N N 378 THR HG1 H N N 379 THR HG21 H N N 380 THR HG22 H N N 381 THR HG23 H N N 382 THR HXT H N N 383 TRP N N N N 384 TRP CA C N S 385 TRP C C N N 386 TRP O O N N 387 TRP CB C N N 388 TRP CG C Y N 389 TRP CD1 C Y N 390 TRP CD2 C Y N 391 TRP NE1 N Y N 392 TRP CE2 C Y N 393 TRP CE3 C Y N 394 TRP CZ2 C Y N 395 TRP CZ3 C Y N 396 TRP CH2 C Y N 397 TRP OXT O N N 398 TRP H H N N 399 TRP H2 H N N 400 TRP HA H N N 401 TRP HB2 H N N 402 TRP HB3 H N N 403 TRP HD1 H N N 404 TRP HE1 H N N 405 TRP HE3 H N N 406 TRP HZ2 H N N 407 TRP HZ3 H N N 408 TRP HH2 H N N 409 TRP HXT H N N 410 TYR N N N N 411 TYR CA C N S 412 TYR C C N N 413 TYR O O N N 414 TYR CB C N N 415 TYR CG C Y N 416 TYR CD1 C Y N 417 TYR CD2 C Y N 418 TYR CE1 C Y N 419 TYR CE2 C Y N 420 TYR CZ C Y N 421 TYR OH O N N 422 TYR OXT O N N 423 TYR H H N N 424 TYR H2 H N N 425 TYR HA H N N 426 TYR HB2 H N N 427 TYR HB3 H N N 428 TYR HD1 H N N 429 TYR HD2 H N N 430 TYR HE1 H N N 431 TYR HE2 H N N 432 TYR HH H N N 433 TYR HXT H N N 434 TYS N N N N 435 TYS CA C N S 436 TYS CB C N N 437 TYS CG C Y N 438 TYS CD1 C Y N 439 TYS CD2 C Y N 440 TYS CE1 C Y N 441 TYS CE2 C Y N 442 TYS CZ C Y N 443 TYS OH O N N 444 TYS S S N N 445 TYS O1 O N N 446 TYS O2 O N N 447 TYS O3 O N N 448 TYS C C N N 449 TYS O O N N 450 TYS OXT O N N 451 TYS H H N N 452 TYS H2 H N N 453 TYS HA H N N 454 TYS HB2 H N N 455 TYS HB3 H N N 456 TYS HD1 H N N 457 TYS HD2 H N N 458 TYS HE1 H N N 459 TYS HE2 H N N 460 TYS HO3 H N N 461 TYS HXT H N N 462 VAL N N N N 463 VAL CA C N S 464 VAL C C N N 465 VAL O O N N 466 VAL CB C N N 467 VAL CG1 C N N 468 VAL CG2 C N N 469 VAL OXT O N N 470 VAL H H N N 471 VAL H2 H N N 472 VAL HA H N N 473 VAL HB H N N 474 VAL HG11 H N N 475 VAL HG12 H N N 476 VAL HG13 H N N 477 VAL HG21 H N N 478 VAL HG22 H N N 479 VAL HG23 H N N 480 VAL HXT H N N 481 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 12U O22 C7 doub N N 1 12U C7 N23 sing N N 2 12U C7 C1 sing N N 3 12U N23 C24 sing N N 4 12U C24 C25 sing N N 5 12U C25 C26 doub Y N 6 12U C25 C30 sing Y N 7 12U C26 C27 sing Y N 8 12U C27 C28 doub Y N 9 12U C28 C9 sing N N 10 12U C28 C29 sing Y N 11 12U C9 N10 doub N N 12 12U C9 N11 sing N N 13 12U C29 C30 doub Y N 14 12U C1 C2 sing N N 15 12U C1 N1 sing N N 16 12U C2 C3 sing N N 17 12U C3 C4 sing N N 18 12U C4 N1 sing N N 19 12U N1 C14 sing N N 20 12U C14 O32 doub N N 21 12U C14 C5 sing N N 22 12U C5 N21 sing N N 23 12U N21 C49 sing N N 24 12U C49 C48 sing N N 25 12U C49 C50 sing N N 26 12U C48 C47 sing N N 27 12U C47 C46 sing N N 28 12U C46 C52 sing N N 29 12U C52 C51 sing N N 30 12U C51 C50 sing N N 31 12U N23 HN23 sing N N 32 12U C24 H24 sing N N 33 12U C24 H24A sing N N 34 12U C26 H26 sing N N 35 12U C27 H27 sing N N 36 12U N10 HN10 sing N N 37 12U N11 HN11 sing N N 38 12U N11 HN1A sing N N 39 12U C29 H29 sing N N 40 12U C30 H30 sing N N 41 12U C1 H1 sing N N 42 12U C2 H2 sing N N 43 12U C2 H2A sing N N 44 12U C3 H3 sing N N 45 12U C3 H3A sing N N 46 12U C4 H4 sing N N 47 12U C4 H4A sing N N 48 12U C5 H5 sing N N 49 12U C5 H5A sing N N 50 12U N21 HN21 sing N N 51 12U C49 H49 sing N N 52 12U C48 H48 sing N N 53 12U C48 H48A sing N N 54 12U C47 H47 sing N N 55 12U C47 H47A sing N N 56 12U C46 H46 sing N N 57 12U C46 H46A sing N N 58 12U C52 H52 sing N N 59 12U C52 H52A sing N N 60 12U C51 H51 sing N N 61 12U C51 H51A sing N N 62 12U C50 H50 sing N N 63 12U C50 H50A sing N N 64 ALA N CA sing N N 65 ALA N H sing N N 66 ALA N H2 sing N N 67 ALA CA C sing N N 68 ALA CA CB sing N N 69 ALA CA HA sing N N 70 ALA C O doub N N 71 ALA C OXT sing N N 72 ALA CB HB1 sing N N 73 ALA CB HB2 sing N N 74 ALA CB HB3 sing N N 75 ALA OXT HXT sing N N 76 ARG N CA sing N N 77 ARG N H sing N N 78 ARG N H2 sing N N 79 ARG CA C sing N N 80 ARG CA CB sing N N 81 ARG CA HA sing N N 82 ARG C O doub N N 83 ARG C OXT sing N N 84 ARG CB CG sing N N 85 ARG CB HB2 sing N N 86 ARG CB HB3 sing N N 87 ARG CG CD sing N N 88 ARG CG HG2 sing N N 89 ARG CG HG3 sing N N 90 ARG CD NE sing N N 91 ARG CD HD2 sing N N 92 ARG CD HD3 sing N N 93 ARG NE CZ sing N N 94 ARG NE HE sing N N 95 ARG CZ NH1 sing N N 96 ARG CZ NH2 doub N N 97 ARG NH1 HH11 sing N N 98 ARG NH1 HH12 sing N N 99 ARG NH2 HH21 sing N N 100 ARG NH2 HH22 sing N N 101 ARG OXT HXT sing N N 102 ASN N CA sing N N 103 ASN N H sing N N 104 ASN N H2 sing N N 105 ASN CA C sing N N 106 ASN CA CB sing N N 107 ASN CA HA sing N N 108 ASN C O doub N N 109 ASN C OXT sing N N 110 ASN CB CG sing N N 111 ASN CB HB2 sing N N 112 ASN CB HB3 sing N N 113 ASN CG OD1 doub N N 114 ASN CG ND2 sing N N 115 ASN ND2 HD21 sing N N 116 ASN ND2 HD22 sing N N 117 ASN OXT HXT sing N N 118 ASP N CA sing N N 119 ASP N H sing N N 120 ASP N H2 sing N N 121 ASP CA C sing N N 122 ASP CA CB sing N N 123 ASP CA HA sing N N 124 ASP C O doub N N 125 ASP C OXT sing N N 126 ASP CB CG sing N N 127 ASP CB HB2 sing N N 128 ASP CB HB3 sing N N 129 ASP CG OD1 doub N N 130 ASP CG OD2 sing N N 131 ASP OD2 HD2 sing N N 132 ASP OXT HXT sing N N 133 CYS N CA sing N N 134 CYS N H sing N N 135 CYS N H2 sing N N 136 CYS CA C sing N N 137 CYS CA CB sing N N 138 CYS CA HA sing N N 139 CYS C O doub N N 140 CYS C OXT sing N N 141 CYS CB SG sing N N 142 CYS CB HB2 sing N N 143 CYS CB HB3 sing N N 144 CYS SG HG sing N N 145 CYS OXT HXT sing N N 146 GLN N CA sing N N 147 GLN N H sing N N 148 GLN N H2 sing N N 149 GLN CA C sing N N 150 GLN CA CB sing N N 151 GLN CA HA sing N N 152 GLN C O doub N N 153 GLN C OXT sing N N 154 GLN CB CG sing N N 155 GLN CB HB2 sing N N 156 GLN CB HB3 sing N N 157 GLN CG CD sing N N 158 GLN CG HG2 sing N N 159 GLN CG HG3 sing N N 160 GLN CD OE1 doub N N 161 GLN CD NE2 sing N N 162 GLN NE2 HE21 sing N N 163 GLN NE2 HE22 sing N N 164 GLN OXT HXT sing N N 165 GLU N CA sing N N 166 GLU N H sing N N 167 GLU N H2 sing N N 168 GLU CA C sing N N 169 GLU CA CB sing N N 170 GLU CA HA sing N N 171 GLU C O doub N N 172 GLU C OXT sing N N 173 GLU CB CG sing N N 174 GLU CB HB2 sing N N 175 GLU CB HB3 sing N N 176 GLU CG CD sing N N 177 GLU CG HG2 sing N N 178 GLU CG HG3 sing N N 179 GLU CD OE1 doub N N 180 GLU CD OE2 sing N N 181 GLU OE2 HE2 sing N N 182 GLU OXT HXT sing N N 183 GLY N CA sing N N 184 GLY N H sing N N 185 GLY N H2 sing N N 186 GLY CA C sing N N 187 GLY CA HA2 sing N N 188 GLY CA HA3 sing N N 189 GLY C O doub N N 190 GLY C OXT sing N N 191 GLY OXT HXT sing N N 192 HIS N CA sing N N 193 HIS N H sing N N 194 HIS N H2 sing N N 195 HIS CA C sing N N 196 HIS CA CB sing N N 197 HIS CA HA sing N N 198 HIS C O doub N N 199 HIS C OXT sing N N 200 HIS CB CG sing N N 201 HIS CB HB2 sing N N 202 HIS CB HB3 sing N N 203 HIS CG ND1 sing Y N 204 HIS CG CD2 doub Y N 205 HIS ND1 CE1 doub Y N 206 HIS ND1 HD1 sing N N 207 HIS CD2 NE2 sing Y N 208 HIS CD2 HD2 sing N N 209 HIS CE1 NE2 sing Y N 210 HIS CE1 HE1 sing N N 211 HIS NE2 HE2 sing N N 212 HIS OXT HXT sing N N 213 HOH O H1 sing N N 214 HOH O H2 sing N N 215 ILE N CA sing N N 216 ILE N H sing N N 217 ILE N H2 sing N N 218 ILE CA C sing N N 219 ILE CA CB sing N N 220 ILE CA HA sing N N 221 ILE C O doub N N 222 ILE C OXT sing N N 223 ILE CB CG1 sing N N 224 ILE CB CG2 sing N N 225 ILE CB HB sing N N 226 ILE CG1 CD1 sing N N 227 ILE CG1 HG12 sing N N 228 ILE CG1 HG13 sing N N 229 ILE CG2 HG21 sing N N 230 ILE CG2 HG22 sing N N 231 ILE CG2 HG23 sing N N 232 ILE CD1 HD11 sing N N 233 ILE CD1 HD12 sing N N 234 ILE CD1 HD13 sing N N 235 ILE OXT HXT sing N N 236 LEU N CA sing N N 237 LEU N H sing N N 238 LEU N H2 sing N N 239 LEU CA C sing N N 240 LEU CA CB sing N N 241 LEU CA HA sing N N 242 LEU C O doub N N 243 LEU C OXT sing N N 244 LEU CB CG sing N N 245 LEU CB HB2 sing N N 246 LEU CB HB3 sing N N 247 LEU CG CD1 sing N N 248 LEU CG CD2 sing N N 249 LEU CG HG sing N N 250 LEU CD1 HD11 sing N N 251 LEU CD1 HD12 sing N N 252 LEU CD1 HD13 sing N N 253 LEU CD2 HD21 sing N N 254 LEU CD2 HD22 sing N N 255 LEU CD2 HD23 sing N N 256 LEU OXT HXT sing N N 257 LYS N CA sing N N 258 LYS N H sing N N 259 LYS N H2 sing N N 260 LYS CA C sing N N 261 LYS CA CB sing N N 262 LYS CA HA sing N N 263 LYS C O doub N N 264 LYS C OXT sing N N 265 LYS CB CG sing N N 266 LYS CB HB2 sing N N 267 LYS CB HB3 sing N N 268 LYS CG CD sing N N 269 LYS CG HG2 sing N N 270 LYS CG HG3 sing N N 271 LYS CD CE sing N N 272 LYS CD HD2 sing N N 273 LYS CD HD3 sing N N 274 LYS CE NZ sing N N 275 LYS CE HE2 sing N N 276 LYS CE HE3 sing N N 277 LYS NZ HZ1 sing N N 278 LYS NZ HZ2 sing N N 279 LYS NZ HZ3 sing N N 280 LYS OXT HXT sing N N 281 MET N CA sing N N 282 MET N H sing N N 283 MET N H2 sing N N 284 MET CA C sing N N 285 MET CA CB sing N N 286 MET CA HA sing N N 287 MET C O doub N N 288 MET C OXT sing N N 289 MET CB CG sing N N 290 MET CB HB2 sing N N 291 MET CB HB3 sing N N 292 MET CG SD sing N N 293 MET CG HG2 sing N N 294 MET CG HG3 sing N N 295 MET SD CE sing N N 296 MET CE HE1 sing N N 297 MET CE HE2 sing N N 298 MET CE HE3 sing N N 299 MET OXT HXT sing N N 300 PHE N CA sing N N 301 PHE N H sing N N 302 PHE N H2 sing N N 303 PHE CA C sing N N 304 PHE CA CB sing N N 305 PHE CA HA sing N N 306 PHE C O doub N N 307 PHE C OXT sing N N 308 PHE CB CG sing N N 309 PHE CB HB2 sing N N 310 PHE CB HB3 sing N N 311 PHE CG CD1 doub Y N 312 PHE CG CD2 sing Y N 313 PHE CD1 CE1 sing Y N 314 PHE CD1 HD1 sing N N 315 PHE CD2 CE2 doub Y N 316 PHE CD2 HD2 sing N N 317 PHE CE1 CZ doub Y N 318 PHE CE1 HE1 sing N N 319 PHE CE2 CZ sing Y N 320 PHE CE2 HE2 sing N N 321 PHE CZ HZ sing N N 322 PHE OXT HXT sing N N 323 PRO N CA sing N N 324 PRO N CD sing N N 325 PRO N H sing N N 326 PRO CA C sing N N 327 PRO CA CB sing N N 328 PRO CA HA sing N N 329 PRO C O doub N N 330 PRO C OXT sing N N 331 PRO CB CG sing N N 332 PRO CB HB2 sing N N 333 PRO CB HB3 sing N N 334 PRO CG CD sing N N 335 PRO CG HG2 sing N N 336 PRO CG HG3 sing N N 337 PRO CD HD2 sing N N 338 PRO CD HD3 sing N N 339 PRO OXT HXT sing N N 340 SER N CA sing N N 341 SER N H sing N N 342 SER N H2 sing N N 343 SER CA C sing N N 344 SER CA CB sing N N 345 SER CA HA sing N N 346 SER C O doub N N 347 SER C OXT sing N N 348 SER CB OG sing N N 349 SER CB HB2 sing N N 350 SER CB HB3 sing N N 351 SER OG HG sing N N 352 SER OXT HXT sing N N 353 THR N CA sing N N 354 THR N H sing N N 355 THR N H2 sing N N 356 THR CA C sing N N 357 THR CA CB sing N N 358 THR CA HA sing N N 359 THR C O doub N N 360 THR C OXT sing N N 361 THR CB OG1 sing N N 362 THR CB CG2 sing N N 363 THR CB HB sing N N 364 THR OG1 HG1 sing N N 365 THR CG2 HG21 sing N N 366 THR CG2 HG22 sing N N 367 THR CG2 HG23 sing N N 368 THR OXT HXT sing N N 369 TRP N CA sing N N 370 TRP N H sing N N 371 TRP N H2 sing N N 372 TRP CA C sing N N 373 TRP CA CB sing N N 374 TRP CA HA sing N N 375 TRP C O doub N N 376 TRP C OXT sing N N 377 TRP CB CG sing N N 378 TRP CB HB2 sing N N 379 TRP CB HB3 sing N N 380 TRP CG CD1 doub Y N 381 TRP CG CD2 sing Y N 382 TRP CD1 NE1 sing Y N 383 TRP CD1 HD1 sing N N 384 TRP CD2 CE2 doub Y N 385 TRP CD2 CE3 sing Y N 386 TRP NE1 CE2 sing Y N 387 TRP NE1 HE1 sing N N 388 TRP CE2 CZ2 sing Y N 389 TRP CE3 CZ3 doub Y N 390 TRP CE3 HE3 sing N N 391 TRP CZ2 CH2 doub Y N 392 TRP CZ2 HZ2 sing N N 393 TRP CZ3 CH2 sing Y N 394 TRP CZ3 HZ3 sing N N 395 TRP CH2 HH2 sing N N 396 TRP OXT HXT sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 TYS N CA sing N N 422 TYS N H sing N N 423 TYS N H2 sing N N 424 TYS CA CB sing N N 425 TYS CA C sing N N 426 TYS CA HA sing N N 427 TYS CB CG sing N N 428 TYS CB HB2 sing N N 429 TYS CB HB3 sing N N 430 TYS CG CD1 doub Y N 431 TYS CG CD2 sing Y N 432 TYS CD1 CE1 sing Y N 433 TYS CD1 HD1 sing N N 434 TYS CD2 CE2 doub Y N 435 TYS CD2 HD2 sing N N 436 TYS CE1 CZ doub Y N 437 TYS CE1 HE1 sing N N 438 TYS CE2 CZ sing Y N 439 TYS CE2 HE2 sing N N 440 TYS CZ OH sing N N 441 TYS OH S sing N N 442 TYS S O1 doub N N 443 TYS S O2 doub N N 444 TYS S O3 sing N N 445 TYS O3 HO3 sing N N 446 TYS C O doub N N 447 TYS C OXT sing N N 448 TYS OXT HXT sing N N 449 VAL N CA sing N N 450 VAL N H sing N N 451 VAL N H2 sing N N 452 VAL CA C sing N N 453 VAL CA CB sing N N 454 VAL CA HA sing N N 455 VAL C O doub N N 456 VAL C OXT sing N N 457 VAL CB CG1 sing N N 458 VAL CB CG2 sing N N 459 VAL CB HB sing N N 460 VAL CG1 HG11 sing N N 461 VAL CG1 HG12 sing N N 462 VAL CG1 HG13 sing N N 463 VAL CG2 HG21 sing N N 464 VAL CG2 HG22 sing N N 465 VAL CG2 HG23 sing N N 466 VAL OXT HXT sing N N 467 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 'N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide' 12U 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1H8D _pdbx_initial_refinement_model.details 'PDB entry 1H8D' #