data_2ZIB # _entry.id 2ZIB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZIB RCSB RCSB028007 WWPDB D_1000028007 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2AFP _pdbx_database_related.details 'SEA RAVEN TYPE II ANTIFREEZE PROTEIN' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZIB _pdbx_database_status.recvd_initial_deposition_date 2008-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nishimiya, Y.' 1 'Sato, R.' 2 'Kondo, H.' 3 'Noro, N.' 4 'Sugimoto, H.' 5 'Suzuki, M.' 6 'Tsuda, S.' 7 # _citation.id primary _citation.title ;Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 382 _citation.page_first 734 _citation.page_last 746 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18674542 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.07.042 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nishimiya, Y.' 1 primary 'Kondo, H.' 2 primary 'Takamichi, M.' 3 primary 'Sugimoto, H.' 4 primary 'Suzuki, M.' 5 primary 'Miura, A.' 6 primary 'Tsuda, S.' 7 # _cell.entry_id 2ZIB _cell.length_a 43.275 _cell.length_b 48.416 _cell.length_c 59.707 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZIB _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Type II antifreeze protein' 14518.515 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 299 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHALVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVWIGGSACKVAGAWSW TDGTPVDYRTWCPTKPNDILSDCCMQMTAAVDKCWDDLPCPASHASICAKAAI ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHALVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVWIGGSACKVAGAWSW TDGTPVDYRTWCPTKPNDILSDCCMQMTAAVDKCWDDLPCPASHASICAKAAI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 ALA n 1 8 LEU n 1 9 VAL n 1 10 CYS n 1 11 PRO n 1 12 ALA n 1 13 GLY n 1 14 TRP n 1 15 THR n 1 16 LEU n 1 17 HIS n 1 18 GLY n 1 19 GLN n 1 20 ARG n 1 21 CYS n 1 22 PHE n 1 23 TYR n 1 24 SER n 1 25 GLU n 1 26 ALA n 1 27 THR n 1 28 ALA n 1 29 MET n 1 30 THR n 1 31 TRP n 1 32 ASP n 1 33 LEU n 1 34 ALA n 1 35 GLU n 1 36 ALA n 1 37 ASN n 1 38 CYS n 1 39 VAL n 1 40 ASN n 1 41 LYS n 1 42 GLY n 1 43 GLY n 1 44 HIS n 1 45 LEU n 1 46 ALA n 1 47 SER n 1 48 ILE n 1 49 HIS n 1 50 SER n 1 51 LEU n 1 52 GLU n 1 53 GLU n 1 54 GLN n 1 55 LEU n 1 56 TYR n 1 57 ILE n 1 58 LYS n 1 59 ASP n 1 60 ILE n 1 61 VAL n 1 62 ALA n 1 63 GLY n 1 64 ILE n 1 65 VAL n 1 66 TRP n 1 67 ILE n 1 68 GLY n 1 69 GLY n 1 70 SER n 1 71 ALA n 1 72 CYS n 1 73 LYS n 1 74 VAL n 1 75 ALA n 1 76 GLY n 1 77 ALA n 1 78 TRP n 1 79 SER n 1 80 TRP n 1 81 THR n 1 82 ASP n 1 83 GLY n 1 84 THR n 1 85 PRO n 1 86 VAL n 1 87 ASP n 1 88 TYR n 1 89 ARG n 1 90 THR n 1 91 TRP n 1 92 CYS n 1 93 PRO n 1 94 THR n 1 95 LYS n 1 96 PRO n 1 97 ASN n 1 98 ASP n 1 99 ILE n 1 100 LEU n 1 101 SER n 1 102 ASP n 1 103 CYS n 1 104 CYS n 1 105 MET n 1 106 GLN n 1 107 MET n 1 108 THR n 1 109 ALA n 1 110 ALA n 1 111 VAL n 1 112 ASP n 1 113 LYS n 1 114 CYS n 1 115 TRP n 1 116 ASP n 1 117 ASP n 1 118 LEU n 1 119 PRO n 1 120 CYS n 1 121 PRO n 1 122 ALA n 1 123 SER n 1 124 HIS n 1 125 ALA n 1 126 SER n 1 127 ILE n 1 128 CYS n 1 129 ALA n 1 130 LYS n 1 131 ALA n 1 132 ALA n 1 133 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Brachyopsis rostratus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 412977 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'PICHIA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPICZALPHAA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0ZT93_9PERC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ALVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVWIGGSACKVAGAWSWTDGTPV DYRTWCPTKPNDILSDCCMQMTAAVDKCWDDLPCPASHASICAKAAI ; _struct_ref.pdbx_align_begin 42 _struct_ref.pdbx_db_accession A0ZT93 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZIB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0ZT93 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 7 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZIB HIS A 1 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 1 1 1 2ZIB HIS A 2 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 2 2 1 2ZIB HIS A 3 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 3 3 1 2ZIB HIS A 4 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 4 4 1 2ZIB HIS A 5 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 5 5 1 2ZIB HIS A 6 ? UNP A0ZT93 ? ? 'EXPRESSION TAG' 6 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZIB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.40 _exptl_crystal_grow.pdbx_details '0.1M MES, 2M AMMONIUM SULFATE, pH 5.40, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2004-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44B2 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2ZIB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.340 _reflns.number_obs 28592 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 9.82 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2ZIB _refine.ls_number_reflns_obs 27130 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.34 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.133 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.131 _refine.ls_R_factor_R_free 0.164 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1433 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 14.49 _refine.aniso_B[1][1] 0.08000 _refine.aniso_B[2][2] -0.09000 _refine.aniso_B[3][3] 0.01000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.052 _refine.pdbx_overall_ESU_R_Free 0.049 _refine.overall_SU_ML 0.027 _refine.overall_SU_B 0.627 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 999 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 299 _refine_hist.number_atoms_total 1303 _refine_hist.d_res_high 1.34 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.021 ? 1040 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.906 1.913 ? 1429 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.901 5.000 ? 133 'X-RAY DIFFRACTION' ? r_chiral_restr 0.123 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 789 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 525 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.144 0.200 ? 181 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.236 0.200 ? 39 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.171 0.200 ? 24 'X-RAY DIFFRACTION' ? r_mcbond_it 1.715 1.500 ? 657 'X-RAY DIFFRACTION' ? r_mcangle_it 2.484 2.000 ? 1054 'X-RAY DIFFRACTION' ? r_scbond_it 3.264 3.000 ? 383 'X-RAY DIFFRACTION' ? r_scangle_it 4.171 4.500 ? 374 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.658 2.000 ? 1040 'X-RAY DIFFRACTION' ? r_sphericity_free 4.141 2.000 ? 299 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.025 2.000 ? 1004 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.34 _refine_ls_shell.d_res_low 1.38 _refine_ls_shell.number_reflns_R_work 1911 _refine_ls_shell.R_factor_R_work 0.121 _refine_ls_shell.percent_reflns_obs 96.90 _refine_ls_shell.R_factor_R_free 0.163 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 104 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZIB _struct.title 'Crystal structure analysis of calcium-independent type II antifreeze protein' _struct.pdbx_descriptor 'Type II antifreeze protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZIB _struct_keywords.pdbx_keywords 'ANTIFREEZE PROTEIN' _struct_keywords.text 'ANTIFREEZE PROTEIN, THERMAL HYSTERESIS, Lectin' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 30 ? LYS A 41 ? THR A 30 LYS A 41 1 ? 12 HELX_P HELX_P2 2 SER A 50 ? VAL A 61 ? SER A 50 VAL A 61 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 10 A CYS 21 1_555 ? ? ? ? ? ? ? 2.028 ? disulf2 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 38 A CYS 128 1_555 ? ? ? ? ? ? ? 2.049 ? disulf3 disulf ? ? A CYS 72 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 72 A CYS 103 1_555 ? ? ? ? ? ? ? 2.034 ? disulf4 disulf ? ? A CYS 92 SG ? ? ? 1_555 A CYS 114 SG ? ? A CYS 92 A CYS 114 1_555 ? ? ? ? ? ? ? 2.069 ? disulf5 disulf ? ? A CYS 104 SG ? ? ? 1_555 A CYS 120 SG ? ? A CYS 104 A CYS 120 1_555 ? ? ? ? ? ? ? 2.029 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 95 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 95 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 96 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 96 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 15 ? HIS A 17 ? THR A 15 HIS A 17 A 2 ARG A 20 ? MET A 29 ? ARG A 20 MET A 29 A 3 HIS A 124 ? ALA A 131 ? HIS A 124 ALA A 131 A 4 VAL A 65 ? SER A 70 ? VAL A 65 SER A 70 A 5 SER A 79 ? TRP A 80 ? SER A 79 TRP A 80 B 1 HIS A 44 ? LEU A 45 ? HIS A 44 LEU A 45 B 2 HIS A 124 ? ALA A 131 ? HIS A 124 ALA A 131 B 3 VAL A 65 ? SER A 70 ? VAL A 65 SER A 70 B 4 CYS A 104 ? MET A 107 ? CYS A 104 MET A 107 B 5 TRP A 115 ? LEU A 118 ? TRP A 115 LEU A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 17 ? N HIS A 17 O ARG A 20 ? O ARG A 20 A 2 3 N CYS A 21 ? N CYS A 21 O LYS A 130 ? O LYS A 130 A 3 4 O ALA A 125 ? O ALA A 125 N TRP A 66 ? N TRP A 66 A 4 5 N SER A 70 ? N SER A 70 O SER A 79 ? O SER A 79 B 1 2 N HIS A 44 ? N HIS A 44 O ALA A 129 ? O ALA A 129 B 2 3 O ALA A 125 ? O ALA A 125 N TRP A 66 ? N TRP A 66 B 3 4 N GLY A 69 ? N GLY A 69 O MET A 105 ? O MET A 105 B 4 5 N CYS A 104 ? N CYS A 104 O LEU A 118 ? O LEU A 118 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HIS A 5 ? HIS A 5 . ? 3_654 ? 2 AC1 9 HIS A 6 ? HIS A 6 . ? 3_654 ? 3 AC1 9 ALA A 7 ? ALA A 7 . ? 3_654 ? 4 AC1 9 HIS A 44 ? HIS A 44 . ? 1_555 ? 5 AC1 9 HOH C . ? HOH A 521 . ? 1_555 ? 6 AC1 9 HOH C . ? HOH A 623 . ? 1_555 ? 7 AC1 9 HOH C . ? HOH A 664 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 686 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 733 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZIB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZIB _atom_sites.fract_transf_matrix[1][1] 0.023108 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020654 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 CYS 72 72 72 CYS CYS A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 TRP 91 91 91 TRP TRP A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 CYS 104 104 104 CYS CYS A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 CYS 114 114 114 CYS CYS A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 CYS 128 128 128 CYS CYS A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ILE 133 133 133 ILE ILE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SnB phasing . ? 1 REFMAC refinement 5.1.24 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 641 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 642 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 660 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 711 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A MET 29 ? B CG A MET 29 ? B 1.740 1.509 0.231 0.032 N 2 1 CG A MET 29 ? B SD A MET 29 ? B 2.094 1.807 0.287 0.026 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A MET 29 ? B SD A MET 29 ? B CE A MET 29 ? B 78.46 100.20 -21.74 1.60 N 2 1 CB A ASP 32 ? B CG A ASP 32 ? B OD2 A ASP 32 ? B 124.73 118.30 6.43 0.90 N 3 1 CB A ASP 117 ? ? CG A ASP 117 ? ? OD1 A ASP 117 ? ? 124.57 118.30 6.27 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 71 ? ? -143.89 59.69 2 1 THR A 90 ? ? -142.46 59.78 3 1 ALA A 125 ? ? -58.78 171.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 1 ? A HIS 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A HIS 3 ? A HIS 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 3 HOH 1 502 502 HOH HOH A . C 3 HOH 2 503 503 HOH HOH A . C 3 HOH 3 504 504 HOH HOH A . C 3 HOH 4 505 505 HOH HOH A . C 3 HOH 5 506 506 HOH HOH A . C 3 HOH 6 507 507 HOH HOH A . C 3 HOH 7 508 508 HOH HOH A . C 3 HOH 8 509 509 HOH HOH A . C 3 HOH 9 510 510 HOH HOH A . C 3 HOH 10 511 511 HOH HOH A . C 3 HOH 11 512 512 HOH HOH A . C 3 HOH 12 513 513 HOH HOH A . C 3 HOH 13 514 514 HOH HOH A . C 3 HOH 14 515 515 HOH HOH A . C 3 HOH 15 516 516 HOH HOH A . C 3 HOH 16 517 517 HOH HOH A . C 3 HOH 17 518 518 HOH HOH A . C 3 HOH 18 519 519 HOH HOH A . C 3 HOH 19 520 520 HOH HOH A . C 3 HOH 20 521 521 HOH HOH A . C 3 HOH 21 522 522 HOH HOH A . C 3 HOH 22 523 523 HOH HOH A . C 3 HOH 23 524 524 HOH HOH A . C 3 HOH 24 525 525 HOH HOH A . C 3 HOH 25 526 526 HOH HOH A . C 3 HOH 26 527 527 HOH HOH A . C 3 HOH 27 528 528 HOH HOH A . C 3 HOH 28 529 529 HOH HOH A . C 3 HOH 29 530 530 HOH HOH A . C 3 HOH 30 531 531 HOH HOH A . C 3 HOH 31 532 532 HOH HOH A . C 3 HOH 32 533 533 HOH HOH A . C 3 HOH 33 534 534 HOH HOH A . C 3 HOH 34 535 535 HOH HOH A . C 3 HOH 35 536 536 HOH HOH A . C 3 HOH 36 537 537 HOH HOH A . C 3 HOH 37 538 538 HOH HOH A . C 3 HOH 38 539 539 HOH HOH A . C 3 HOH 39 540 540 HOH HOH A . C 3 HOH 40 541 541 HOH HOH A . C 3 HOH 41 542 542 HOH HOH A . C 3 HOH 42 543 543 HOH HOH A . C 3 HOH 43 544 544 HOH HOH A . C 3 HOH 44 545 545 HOH HOH A . C 3 HOH 45 546 546 HOH HOH A . C 3 HOH 46 547 547 HOH HOH A . C 3 HOH 47 548 548 HOH HOH A . C 3 HOH 48 549 549 HOH HOH A . C 3 HOH 49 550 550 HOH HOH A . C 3 HOH 50 551 551 HOH HOH A . C 3 HOH 51 552 552 HOH HOH A . C 3 HOH 52 553 553 HOH HOH A . C 3 HOH 53 554 554 HOH HOH A . C 3 HOH 54 555 555 HOH HOH A . C 3 HOH 55 556 556 HOH HOH A . C 3 HOH 56 557 557 HOH HOH A . C 3 HOH 57 558 558 HOH HOH A . C 3 HOH 58 559 559 HOH HOH A . C 3 HOH 59 560 560 HOH HOH A . C 3 HOH 60 561 561 HOH HOH A . C 3 HOH 61 562 562 HOH HOH A . C 3 HOH 62 563 563 HOH HOH A . C 3 HOH 63 564 564 HOH HOH A . C 3 HOH 64 565 565 HOH HOH A . C 3 HOH 65 566 566 HOH HOH A . C 3 HOH 66 567 567 HOH HOH A . C 3 HOH 67 568 568 HOH HOH A . C 3 HOH 68 569 569 HOH HOH A . C 3 HOH 69 570 570 HOH HOH A . C 3 HOH 70 571 571 HOH HOH A . C 3 HOH 71 572 572 HOH HOH A . C 3 HOH 72 573 573 HOH HOH A . C 3 HOH 73 574 574 HOH HOH A . C 3 HOH 74 575 575 HOH HOH A . C 3 HOH 75 576 576 HOH HOH A . C 3 HOH 76 577 577 HOH HOH A . C 3 HOH 77 578 578 HOH HOH A . C 3 HOH 78 579 579 HOH HOH A . C 3 HOH 79 580 580 HOH HOH A . C 3 HOH 80 581 581 HOH HOH A . C 3 HOH 81 582 582 HOH HOH A . C 3 HOH 82 583 583 HOH HOH A . C 3 HOH 83 584 584 HOH HOH A . C 3 HOH 84 585 585 HOH HOH A . C 3 HOH 85 586 586 HOH HOH A . C 3 HOH 86 587 587 HOH HOH A . C 3 HOH 87 588 588 HOH HOH A . C 3 HOH 88 589 589 HOH HOH A . C 3 HOH 89 590 590 HOH HOH A . C 3 HOH 90 591 591 HOH HOH A . C 3 HOH 91 592 592 HOH HOH A . C 3 HOH 92 593 593 HOH HOH A . C 3 HOH 93 594 594 HOH HOH A . C 3 HOH 94 595 595 HOH HOH A . C 3 HOH 95 596 596 HOH HOH A . C 3 HOH 96 597 597 HOH HOH A . C 3 HOH 97 598 598 HOH HOH A . C 3 HOH 98 599 599 HOH HOH A . C 3 HOH 99 600 600 HOH HOH A . C 3 HOH 100 601 601 HOH HOH A . C 3 HOH 101 602 602 HOH HOH A . C 3 HOH 102 603 603 HOH HOH A . C 3 HOH 103 604 604 HOH HOH A . C 3 HOH 104 605 605 HOH HOH A . C 3 HOH 105 606 606 HOH HOH A . C 3 HOH 106 607 607 HOH HOH A . C 3 HOH 107 608 608 HOH HOH A . C 3 HOH 108 609 609 HOH HOH A . C 3 HOH 109 610 610 HOH HOH A . C 3 HOH 110 611 611 HOH HOH A . C 3 HOH 111 612 612 HOH HOH A . C 3 HOH 112 613 613 HOH HOH A . C 3 HOH 113 614 614 HOH HOH A . C 3 HOH 114 615 615 HOH HOH A . C 3 HOH 115 616 616 HOH HOH A . C 3 HOH 116 617 617 HOH HOH A . C 3 HOH 117 618 618 HOH HOH A . C 3 HOH 118 619 619 HOH HOH A . C 3 HOH 119 620 620 HOH HOH A . C 3 HOH 120 621 621 HOH HOH A . C 3 HOH 121 622 622 HOH HOH A . C 3 HOH 122 623 623 HOH HOH A . C 3 HOH 123 624 624 HOH HOH A . C 3 HOH 124 625 625 HOH HOH A . C 3 HOH 125 626 626 HOH HOH A . C 3 HOH 126 627 627 HOH HOH A . C 3 HOH 127 628 628 HOH HOH A . C 3 HOH 128 629 629 HOH HOH A . C 3 HOH 129 630 630 HOH HOH A . C 3 HOH 130 631 631 HOH HOH A . C 3 HOH 131 632 632 HOH HOH A . C 3 HOH 132 633 633 HOH HOH A . C 3 HOH 133 634 634 HOH HOH A . C 3 HOH 134 635 635 HOH HOH A . C 3 HOH 135 636 636 HOH HOH A . C 3 HOH 136 637 637 HOH HOH A . C 3 HOH 137 638 638 HOH HOH A . C 3 HOH 138 639 639 HOH HOH A . C 3 HOH 139 640 640 HOH HOH A . C 3 HOH 140 641 641 HOH HOH A . C 3 HOH 141 642 642 HOH HOH A . C 3 HOH 142 643 643 HOH HOH A . C 3 HOH 143 644 644 HOH HOH A . C 3 HOH 144 645 645 HOH HOH A . C 3 HOH 145 646 646 HOH HOH A . C 3 HOH 146 647 647 HOH HOH A . C 3 HOH 147 648 648 HOH HOH A . C 3 HOH 148 649 649 HOH HOH A . C 3 HOH 149 650 650 HOH HOH A . C 3 HOH 150 651 651 HOH HOH A . C 3 HOH 151 652 652 HOH HOH A . C 3 HOH 152 653 653 HOH HOH A . C 3 HOH 153 654 654 HOH HOH A . C 3 HOH 154 655 655 HOH HOH A . C 3 HOH 155 656 656 HOH HOH A . C 3 HOH 156 657 657 HOH HOH A . C 3 HOH 157 658 658 HOH HOH A . C 3 HOH 158 659 659 HOH HOH A . C 3 HOH 159 660 660 HOH HOH A . C 3 HOH 160 661 661 HOH HOH A . C 3 HOH 161 662 662 HOH HOH A . C 3 HOH 162 663 663 HOH HOH A . C 3 HOH 163 664 664 HOH HOH A . C 3 HOH 164 665 665 HOH HOH A . C 3 HOH 165 666 666 HOH HOH A . C 3 HOH 166 667 667 HOH HOH A . C 3 HOH 167 668 668 HOH HOH A . C 3 HOH 168 669 669 HOH HOH A . C 3 HOH 169 670 670 HOH HOH A . C 3 HOH 170 671 671 HOH HOH A . C 3 HOH 171 672 672 HOH HOH A . C 3 HOH 172 673 673 HOH HOH A . C 3 HOH 173 674 674 HOH HOH A . C 3 HOH 174 675 675 HOH HOH A . C 3 HOH 175 676 676 HOH HOH A . C 3 HOH 176 677 677 HOH HOH A . C 3 HOH 177 678 678 HOH HOH A . C 3 HOH 178 679 679 HOH HOH A . C 3 HOH 179 680 680 HOH HOH A . C 3 HOH 180 681 681 HOH HOH A . C 3 HOH 181 682 682 HOH HOH A . C 3 HOH 182 683 683 HOH HOH A . C 3 HOH 183 684 684 HOH HOH A . C 3 HOH 184 685 685 HOH HOH A . C 3 HOH 185 686 686 HOH HOH A . C 3 HOH 186 687 687 HOH HOH A . C 3 HOH 187 688 688 HOH HOH A . C 3 HOH 188 689 689 HOH HOH A . C 3 HOH 189 690 690 HOH HOH A . C 3 HOH 190 691 691 HOH HOH A . C 3 HOH 191 692 692 HOH HOH A . C 3 HOH 192 693 693 HOH HOH A . C 3 HOH 193 694 694 HOH HOH A . C 3 HOH 194 695 695 HOH HOH A . C 3 HOH 195 696 696 HOH HOH A . C 3 HOH 196 697 697 HOH HOH A . C 3 HOH 197 698 698 HOH HOH A . C 3 HOH 198 699 699 HOH HOH A . C 3 HOH 199 700 700 HOH HOH A . C 3 HOH 200 701 701 HOH HOH A . C 3 HOH 201 702 702 HOH HOH A . C 3 HOH 202 703 703 HOH HOH A . C 3 HOH 203 704 704 HOH HOH A . C 3 HOH 204 705 705 HOH HOH A . C 3 HOH 205 706 706 HOH HOH A . C 3 HOH 206 707 707 HOH HOH A . C 3 HOH 207 708 708 HOH HOH A . C 3 HOH 208 709 709 HOH HOH A . C 3 HOH 209 710 710 HOH HOH A . C 3 HOH 210 711 711 HOH HOH A . C 3 HOH 211 712 712 HOH HOH A . C 3 HOH 212 713 713 HOH HOH A . C 3 HOH 213 714 714 HOH HOH A . C 3 HOH 214 715 715 HOH HOH A . C 3 HOH 215 716 716 HOH HOH A . C 3 HOH 216 717 717 HOH HOH A . C 3 HOH 217 718 718 HOH HOH A . C 3 HOH 218 719 719 HOH HOH A . C 3 HOH 219 720 720 HOH HOH A . C 3 HOH 220 721 721 HOH HOH A . C 3 HOH 221 722 722 HOH HOH A . C 3 HOH 222 723 723 HOH HOH A . C 3 HOH 223 724 724 HOH HOH A . C 3 HOH 224 725 725 HOH HOH A . C 3 HOH 225 726 726 HOH HOH A . C 3 HOH 226 727 727 HOH HOH A . C 3 HOH 227 728 728 HOH HOH A . C 3 HOH 228 729 729 HOH HOH A . C 3 HOH 229 730 730 HOH HOH A . C 3 HOH 230 731 731 HOH HOH A . C 3 HOH 231 732 732 HOH HOH A . C 3 HOH 232 733 733 HOH HOH A . C 3 HOH 233 734 734 HOH HOH A . C 3 HOH 234 735 735 HOH HOH A . C 3 HOH 235 736 736 HOH HOH A . C 3 HOH 236 737 737 HOH HOH A . C 3 HOH 237 738 738 HOH HOH A . C 3 HOH 238 739 739 HOH HOH A . C 3 HOH 239 740 740 HOH HOH A . C 3 HOH 240 741 741 HOH HOH A . C 3 HOH 241 742 742 HOH HOH A . C 3 HOH 242 743 743 HOH HOH A . C 3 HOH 243 744 744 HOH HOH A . C 3 HOH 244 745 745 HOH HOH A . C 3 HOH 245 746 746 HOH HOH A . C 3 HOH 246 747 747 HOH HOH A . C 3 HOH 247 748 748 HOH HOH A . C 3 HOH 248 749 749 HOH HOH A . C 3 HOH 249 750 750 HOH HOH A . C 3 HOH 250 751 751 HOH HOH A . C 3 HOH 251 752 752 HOH HOH A . C 3 HOH 252 753 753 HOH HOH A . C 3 HOH 253 754 754 HOH HOH A . C 3 HOH 254 755 755 HOH HOH A . C 3 HOH 255 756 756 HOH HOH A . C 3 HOH 256 757 757 HOH HOH A . C 3 HOH 257 758 758 HOH HOH A . C 3 HOH 258 759 759 HOH HOH A . C 3 HOH 259 760 760 HOH HOH A . C 3 HOH 260 761 761 HOH HOH A . C 3 HOH 261 762 762 HOH HOH A . C 3 HOH 262 763 763 HOH HOH A . C 3 HOH 263 764 764 HOH HOH A . C 3 HOH 264 765 765 HOH HOH A . C 3 HOH 265 766 766 HOH HOH A . C 3 HOH 266 767 767 HOH HOH A . C 3 HOH 267 768 768 HOH HOH A . C 3 HOH 268 769 769 HOH HOH A . C 3 HOH 269 770 770 HOH HOH A . C 3 HOH 270 771 771 HOH HOH A . C 3 HOH 271 772 772 HOH HOH A . C 3 HOH 272 773 773 HOH HOH A . C 3 HOH 273 774 774 HOH HOH A . C 3 HOH 274 775 775 HOH HOH A . C 3 HOH 275 776 776 HOH HOH A . C 3 HOH 276 777 777 HOH HOH A . C 3 HOH 277 778 778 HOH HOH A . C 3 HOH 278 779 779 HOH HOH A . C 3 HOH 279 780 780 HOH HOH A . C 3 HOH 280 781 781 HOH HOH A . C 3 HOH 281 782 782 HOH HOH A . C 3 HOH 282 783 783 HOH HOH A . C 3 HOH 283 784 784 HOH HOH A . C 3 HOH 284 785 785 HOH HOH A . C 3 HOH 285 786 786 HOH HOH A . C 3 HOH 286 787 787 HOH HOH A . C 3 HOH 287 788 788 HOH HOH A . C 3 HOH 288 789 789 HOH HOH A . C 3 HOH 289 790 790 HOH HOH A . C 3 HOH 290 791 791 HOH HOH A . C 3 HOH 291 792 792 HOH HOH A . C 3 HOH 292 793 793 HOH HOH A . C 3 HOH 293 794 794 HOH HOH A . C 3 HOH 294 795 795 HOH HOH A . C 3 HOH 295 796 796 HOH HOH A . C 3 HOH 296 797 797 HOH HOH A . C 3 HOH 297 798 798 HOH HOH A . C 3 HOH 298 799 799 HOH HOH A . C 3 HOH 299 800 800 HOH HOH A . #