HEADER TRANSFERASE 22-FEB-08 2ZIR TITLE CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A TITLE 2 BENZOFURAN INHIBITOR AND FPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAAX FARNESYLTRANSFERASE SUBUNIT ALPHA, RAS PROTEINS COMPND 5 PRENYLTRANSFERASE ALPHA, FTASE-ALPHA, TYPE I PROTEIN GERANYL- COMPND 6 GERANYLTRANSFERASE SUBUNIT ALPHA, GGTASE-I-ALPHA; COMPND 7 EC: 2.5.1.58; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN FARNESYLTRANSFERASE SUBUNIT BETA; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: CAAX FARNESYLTRANSFERASE SUBUNIT BETA, RAS PROTEINS COMPND 14 PRENYLTRANSFERASE BETA, FTASE-BETA; COMPND 15 EC: 2.5.1.58; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: FNTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: FNTB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CP; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS PRENYLTRANSFERASE, TRANSFERASE, METAL-BINDING, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.A.FUKAMI,S.SOGABE,Y.NAGATA,O.KONDOH,N.ISHII REVDAT 5 01-NOV-23 2ZIR 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ZIR 1 VERSN REVDAT 3 26-MAY-10 2ZIR 1 TITLE REVDAT 2 17-MAR-09 2ZIR 1 JRNL REVDAT 1 24-FEB-09 2ZIR 0 JRNL AUTH K.ASOH,M.KOHCHI,I.HYOUDOH,T.OHTSUKA,M.MASUBUCHI,K.KAWASAKI, JRNL AUTH 2 H.EBIIKE,Y.SHIRATORI,T.A.FUKAMI,O.KONDOH,T.TSUKAGUCHI, JRNL AUTH 3 N.ISHII,Y.AOKI,N.SHIMMA,M.SAKAITANI JRNL TITL SYNTHESIS AND STRUCTURE-ACTIVITY RELATIONSHIPS OF NOVEL JRNL TITL 2 BENZOFURAN FARNESYLTRANSFERASE INHIBITORS JRNL REF BIOORG.MED.CHEM.LETT. V. 19 1753 2009 JRNL REFN ISSN 0960-894X JRNL PMID 19217288 JRNL DOI 10.1016/J.BMCL.2009.01.074 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2000 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 44020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 43 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 797 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.55600 REMARK 3 B22 (A**2) : -0.55600 REMARK 3 B33 (A**2) : 1.11200 REMARK 3 B12 (A**2) : -3.96100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.329 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.720 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.291 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.493 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FPP.PARAM REMARK 3 PARAMETER FILE 5 : 5052.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FPP.TOP REMARK 3 TOPOLOGY FILE 5 : 5052.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000028023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : WEISSENBERG REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 1.9.0 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 1.9.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: MOLREP 6.2.5 REMARK 200 STARTING MODEL: PDB ENTRY 1FPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MG/ML PROTEIN, 0.5MM FPP, 1MM REMARK 280 INHIBITOR, 10% PEG6000, 0.2M MG ACETATE, 0.1M NA ACETATE BUFFER, REMARK 280 PH4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.05967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.11933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.58950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.64917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.52983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 GLN A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 ARG A 369 REMARK 465 GLU A 370 REMARK 465 SER A 371 REMARK 465 ASP A 372 REMARK 465 ILE A 373 REMARK 465 PRO A 374 REMARK 465 ALA A 375 REMARK 465 SER A 376 REMARK 465 VAL A 377 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 THR B 8 REMARK 465 TYR B 9 REMARK 465 TYR B 10 REMARK 465 CYS B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 VAL B 18 REMARK 465 TRP B 19 REMARK 465 SER B 20 REMARK 465 PHE B 423 REMARK 465 GLU B 424 REMARK 465 GLU B 425 REMARK 465 CYS B 426 REMARK 465 GLU B 427 REMARK 465 ASP B 428 REMARK 465 ALA B 429 REMARK 465 VAL B 430 REMARK 465 THR B 431 REMARK 465 SER B 432 REMARK 465 ASP B 433 REMARK 465 PRO B 434 REMARK 465 ALA B 435 REMARK 465 THR B 436 REMARK 465 ASP B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 924 O HOH A 933 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 4.36 -64.20 REMARK 500 VAL A 88 45.40 36.12 REMARK 500 ASN A 127 88.52 -159.13 REMARK 500 LYS A 164 53.52 -95.76 REMARK 500 LEU A 215 56.01 -109.54 REMARK 500 ASP A 230 94.95 -161.48 REMARK 500 THR A 247 -88.49 -115.24 REMARK 500 ASP A 286 -71.88 -52.42 REMARK 500 HIS A 306 37.11 -84.87 REMARK 500 GLN A 326 82.79 49.62 REMARK 500 LYS A 330 24.52 -70.71 REMARK 500 GLU A 347 -69.06 -125.85 REMARK 500 ASP A 349 56.71 -156.81 REMARK 500 SER A 365 -6.99 -57.70 REMARK 500 LYS A 366 4.98 -151.39 REMARK 500 GLN B 74 62.21 -66.64 REMARK 500 ASP B 91 0.38 -64.84 REMARK 500 HIS B 331 95.58 -69.71 REMARK 500 ASP B 352 -72.28 -55.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD1 REMARK 620 2 ASP B 297 OD2 57.1 REMARK 620 3 CYS B 299 SG 112.3 92.7 REMARK 620 4 HIS B 362 NE2 115.1 88.2 123.4 REMARK 620 5 NH7 B 903 N3 89.8 146.9 101.7 107.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH7 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 921 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 923 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 924 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 925 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 927 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZIS RELATED DB: PDB DBREF 2ZIR A 1 377 UNP Q04631 PFTA_RAT 1 377 DBREF 2ZIR B 1 437 UNP Q02293 PFTB_RAT 1 437 SEQADV 2ZIR THR A 156 UNP Q04631 ILE 156 ENGINEERED MUTATION SEQADV 2ZIR GLY B -2 UNP Q02293 EXPRESSION TAG SEQADV 2ZIR SER B -1 UNP Q02293 EXPRESSION TAG SEQADV 2ZIR HIS B 0 UNP Q02293 EXPRESSION TAG SEQRES 1 A 377 MET ALA ALA THR GLU GLY VAL GLY GLU SER ALA PRO GLY SEQRES 2 A 377 GLY GLU PRO GLY GLN PRO GLU GLN PRO PRO PRO PRO PRO SEQRES 3 A 377 PRO PRO PRO PRO ALA GLN GLN PRO GLN GLU GLU GLU MET SEQRES 4 A 377 ALA ALA GLU ALA GLY GLU ALA ALA ALA SER PRO MET ASP SEQRES 5 A 377 ASP GLY PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU SEQRES 6 A 377 TYR ARG ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL SEQRES 7 A 377 PRO GLN ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE SEQRES 8 A 377 TYR SER GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG SEQRES 9 A 377 ALA VAL LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE SEQRES 10 A 377 LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN SEQRES 11 A 377 TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER SEQRES 12 A 377 LEU GLN LYS ASP LEU GLN GLU GLU MET ASN TYR ILE THR SEQRES 13 A 377 ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP SEQRES 14 A 377 HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SEQRES 15 A 377 SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN SEQRES 16 A 377 ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP SEQRES 17 A 377 VAL ILE GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN SEQRES 18 A 377 TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SEQRES 19 A 377 SER VAL TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR SEQRES 20 A 377 THR GLY TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL SEQRES 21 A 377 GLN TYR THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN SEQRES 22 A 377 GLU SER ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP SEQRES 23 A 377 ARG GLY LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU SEQRES 24 A 377 LEU ASP LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE SEQRES 25 A 377 ALA PHE LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN SEQRES 26 A 377 GLN CYS ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU SEQRES 27 A 377 GLU LEU CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE SEQRES 28 A 377 ARG LYS GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SEQRES 29 A 377 SER LYS HIS SER ARG GLU SER ASP ILE PRO ALA SER VAL SEQRES 1 B 440 GLY SER HIS MET ALA SER SER SER SER PHE THR TYR TYR SEQRES 2 B 440 CYS PRO PRO SER SER SER PRO VAL TRP SER GLU PRO LEU SEQRES 3 B 440 TYR SER LEU ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN SEQRES 4 B 440 ASP ASP SER VAL GLU THR VAL THR SER ILE GLU GLN ALA SEQRES 5 B 440 LYS VAL GLU GLU LYS ILE GLN GLU VAL PHE SER SER TYR SEQRES 6 B 440 LYS PHE ASN HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG SEQRES 7 B 440 GLU LYS HIS PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN SEQRES 8 B 440 LEU THR ASP ALA TYR GLU CYS LEU ASP ALA SER ARG PRO SEQRES 9 B 440 TRP LEU CYS TYR TRP ILE LEU HIS SER LEU GLU LEU LEU SEQRES 10 B 440 ASP GLU PRO ILE PRO GLN ILE VAL ALA THR ASP VAL CYS SEQRES 11 B 440 GLN PHE LEU GLU LEU CYS GLN SER PRO ASP GLY GLY PHE SEQRES 12 B 440 GLY GLY GLY PRO GLY GLN TYR PRO HIS LEU ALA PRO THR SEQRES 13 B 440 TYR ALA ALA VAL ASN ALA LEU CYS ILE ILE GLY THR GLU SEQRES 14 B 440 GLU ALA TYR ASN VAL ILE ASN ARG GLU LYS LEU LEU GLN SEQRES 15 B 440 TYR LEU TYR SER LEU LYS GLN PRO ASP GLY SER PHE LEU SEQRES 16 B 440 MET HIS VAL GLY GLY GLU VAL ASP VAL ARG SER ALA TYR SEQRES 17 B 440 CYS ALA ALA SER VAL ALA SER LEU THR ASN ILE ILE THR SEQRES 18 B 440 PRO ASP LEU PHE GLU GLY THR ALA GLU TRP ILE ALA ARG SEQRES 19 B 440 CYS GLN ASN TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY SEQRES 20 B 440 MET GLU ALA HIS GLY GLY TYR THR PHE CYS GLY LEU ALA SEQRES 21 B 440 ALA LEU VAL ILE LEU LYS LYS GLU ARG SER LEU ASN LEU SEQRES 22 B 440 LYS SER LEU LEU GLN TRP VAL THR SER ARG GLN MET ARG SEQRES 23 B 440 PHE GLU GLY GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL SEQRES 24 B 440 ASP GLY CYS TYR SER PHE TRP GLN ALA GLY LEU LEU PRO SEQRES 25 B 440 LEU LEU HIS ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA SEQRES 26 B 440 LEU SER MET SER HIS TRP MET PHE HIS GLN GLN ALA LEU SEQRES 27 B 440 GLN GLU TYR ILE LEU MET CYS CYS GLN CYS PRO ALA GLY SEQRES 28 B 440 GLY LEU LEU ASP LYS PRO GLY LYS SER ARG ASP PHE TYR SEQRES 29 B 440 HIS THR CYS TYR CYS LEU SER GLY LEU SER ILE ALA GLN SEQRES 30 B 440 HIS PHE GLY SER GLY ALA MET LEU HIS ASP VAL VAL MET SEQRES 31 B 440 GLY VAL PRO GLU ASN VAL LEU GLN PRO THR HIS PRO VAL SEQRES 32 B 440 TYR ASN ILE GLY PRO ASP LYS VAL ILE GLN ALA THR THR SEQRES 33 B 440 HIS PHE LEU GLN LYS PRO VAL PRO GLY PHE GLU GLU CYS SEQRES 34 B 440 GLU ASP ALA VAL THR SER ASP PRO ALA THR ASP HET GOL A 921 6 HET GOL A 923 6 HET ZN B 901 1 HET FPP B 902 24 HET NH7 B 903 39 HET GOL B 924 6 HET GOL B 925 6 HET GOL B 927 6 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM FPP FARNESYL DIPHOSPHATE HETNAM NH7 2-[(S)-(4-CHLOROPHENYL)(HYDROXY)(1-METHYL-1H-IMIDAZOL- HETNAM 2 NH7 5-YL)METHYL]-N-MORPHOLIN-4-YL-7-PHENYL-1-BENZOFURAN-5- HETNAM 3 NH7 CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 5 ZN ZN 2+ FORMUL 6 FPP C15 H28 O7 P2 FORMUL 7 NH7 C30 H27 CL N4 O4 FORMUL 11 HOH *397(H2 O) HELIX 1 1 LEU A 65 ALA A 73 5 9 HELIX 2 2 SER A 93 ARG A 109 1 17 HELIX 3 3 SER A 113 ASN A 127 1 15 HELIX 4 4 ASN A 130 GLN A 145 1 16 HELIX 5 5 ASP A 147 GLN A 162 1 16 HELIX 6 6 ASN A 165 LYS A 180 1 16 HELIX 7 7 GLN A 184 ASN A 194 1 11 HELIX 8 8 ASN A 199 PHE A 213 1 15 HELIX 9 9 ASN A 218 ASP A 230 1 13 HELIX 10 10 ASN A 233 ASN A 246 1 14 HELIX 11 11 ASP A 252 VAL A 270 1 19 HELIX 12 12 ASN A 273 GLN A 285 1 13 HELIX 13 13 GLY A 288 ARG A 291 5 4 HELIX 14 14 TYR A 292 LEU A 302 1 11 HELIX 15 15 SER A 308 LEU A 323 1 16 HELIX 16 16 GLU A 331 GLU A 347 1 17 HELIX 17 17 ASP A 349 ILE A 351 5 3 HELIX 18 18 ARG A 352 SER A 368 1 17 HELIX 19 19 LEU B 23 ARG B 34 5 12 HELIX 20 20 THR B 42 HIS B 66 1 25 HELIX 21 21 GLN B 74 LEU B 86 1 13 HELIX 22 22 THR B 90 ASP B 97 5 8 HELIX 23 23 SER B 99 LEU B 114 1 16 HELIX 24 24 PRO B 119 GLN B 134 1 16 HELIX 25 25 HIS B 149 GLY B 164 1 16 HELIX 26 26 THR B 165 ILE B 172 1 8 HELIX 27 27 ASN B 173 LYS B 185 1 13 HELIX 28 28 ASP B 200 THR B 214 1 15 HELIX 29 29 GLY B 224 CYS B 232 1 9 HELIX 30 30 HIS B 248 LYS B 263 1 16 HELIX 31 31 LYS B 264 LEU B 268 5 5 HELIX 32 32 ASN B 269 SER B 279 1 11 HELIX 33 33 CYS B 299 GLN B 304 1 6 HELIX 34 34 GLY B 306 GLN B 318 1 13 HELIX 35 35 HIS B 331 CYS B 343 1 13 HELIX 36 36 ASP B 359 GLN B 374 1 16 HELIX 37 37 VAL B 389 VAL B 393 5 5 HELIX 38 38 GLY B 404 GLN B 417 1 14 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 88 LEU B 89 1 O LEU B 89 N GLN A 89 SHEET 1 B 2 HIS B 375 SER B 378 0 SHEET 2 B 2 MET B 381 ASP B 384 -1 O HIS B 383 N PHE B 376 LINK OD1 ASP B 297 ZN ZN B 901 1555 1555 1.97 LINK OD2 ASP B 297 ZN ZN B 901 1555 1555 2.48 LINK SG CYS B 299 ZN ZN B 901 1555 1555 2.26 LINK NE2 HIS B 362 ZN ZN B 901 1555 1555 2.34 LINK ZN ZN B 901 N3 NH7 B 903 1555 1555 1.97 SITE 1 AC1 3 ASP B 297 CYS B 299 HIS B 362 SITE 1 AC2 11 LYS A 164 TYR A 166 ARG B 202 HIS B 248 SITE 2 AC2 11 GLY B 250 CYS B 254 ARG B 291 LYS B 294 SITE 3 AC2 11 TYR B 300 TRP B 303 TYR B 361 SITE 1 AC3 11 ALA B 92 TYR B 93 LEU B 96 TRP B 102 SITE 2 AC3 11 TRP B 106 ASP B 297 CYS B 299 TYR B 300 SITE 3 AC3 11 ASP B 359 TYR B 361 HIS B 362 SITE 1 AC4 6 PHE A 103 ARG A 104 LEU A 107 ASN A 130 SITE 2 AC4 6 PRO B 144 GLY B 145 SITE 1 AC5 3 LYS A 198 ASN B 293 LYS B 294 SITE 1 AC6 5 HIS B 375 GLY B 377 PRO B 396 THR B 397 SITE 2 AC6 5 PRO B 405 SITE 1 AC7 1 CYS B 95 SITE 1 AC8 3 ASP B 37 SER B 39 GLU B 41 CRYST1 171.996 171.996 69.179 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005814 0.003357 0.000000 0.00000 SCALE2 0.000000 0.006714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014455 0.00000