data_2ZKF # _entry.id 2ZKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZKF pdb_00002zkf 10.2210/pdb2zkf/pdb NDB PD1098 ? ? RCSB RCSB028083 ? ? WWPDB D_1000028083 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ZKD . unspecified PDB 2ZKE . unspecified PDB 2ZKG . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZKF _pdbx_database_status.recvd_initial_deposition_date 2008-03-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arita, K.' 1 'Ariyoshi, M.' 2 'Tochio, H.' 3 'Nakamura, Y.' 4 'Shirakawa, M.' 5 # _citation.id primary _citation.title 'Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism' _citation.journal_abbrev Nature _citation.journal_volume 455 _citation.page_first 818 _citation.page_last 821 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18772891 _citation.pdbx_database_id_DOI 10.1038/nature07249 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Arita, K.' 1 ? primary 'Ariyoshi, M.' 2 ? primary 'Tochio, H.' 3 ? primary 'Nakamura, Y.' 4 ? primary 'Shirakawa, M.' 5 ? # _cell.entry_id 2ZKF _cell.length_a 58.878 _cell.length_b 58.878 _cell.length_c 182.309 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZKF _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase UHRF1' 23407.109 1 6.3.2.- ? 'UNP residues 404-613' ? 2 polymer syn ;DNA (5'-D(P*DCP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DAP*DGP*DA)-3') ; 3367.225 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DCP*DTP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DGP*DA)-3') ; 3363.224 1 ? ? ? ? 4 water nat water 18.015 45 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Ubiquitin-like PHD and RING finger domain-containing protein 1, Ubiquitin-like-containing PHD and RING finger domains protein 1, Nuclear zinc finger protein Np95, Nuclear protein 95 ; 2 'oligonucleotides containing hemi-methylated CpG site' 3 'oligonucleotides containing hemi-methylated CpG site' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTY TGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIY KVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPE ; ;SGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTY TGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIY KVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPE ; A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DC)(DG)(DG)(DA)(DT)(DA)(DG)(DA)' CACCGGATAGA C ? 3 polydeoxyribonucleotide no yes '(DC)(DT)(DA)(DT)(DC)(5CM)(DG)(DG)(DT)(DG)(DA)' CTATCCGGTGA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLY n 1 3 MET n 1 4 ALA n 1 5 CYS n 1 6 VAL n 1 7 GLY n 1 8 ARG n 1 9 THR n 1 10 THR n 1 11 GLU n 1 12 CYS n 1 13 THR n 1 14 ILE n 1 15 VAL n 1 16 PRO n 1 17 ALA n 1 18 ASN n 1 19 HIS n 1 20 PHE n 1 21 GLY n 1 22 PRO n 1 23 ILE n 1 24 PRO n 1 25 GLY n 1 26 VAL n 1 27 PRO n 1 28 VAL n 1 29 GLY n 1 30 THR n 1 31 MET n 1 32 TRP n 1 33 ARG n 1 34 PHE n 1 35 ARG n 1 36 VAL n 1 37 GLN n 1 38 VAL n 1 39 SER n 1 40 GLU n 1 41 SER n 1 42 GLY n 1 43 VAL n 1 44 HIS n 1 45 ARG n 1 46 PRO n 1 47 HIS n 1 48 VAL n 1 49 ALA n 1 50 GLY n 1 51 ILE n 1 52 HIS n 1 53 GLY n 1 54 ARG n 1 55 SER n 1 56 ASN n 1 57 ASP n 1 58 GLY n 1 59 ALA n 1 60 TYR n 1 61 SER n 1 62 LEU n 1 63 VAL n 1 64 LEU n 1 65 ALA n 1 66 GLY n 1 67 GLY n 1 68 TYR n 1 69 GLU n 1 70 ASP n 1 71 ASP n 1 72 VAL n 1 73 ASP n 1 74 ASN n 1 75 GLY n 1 76 ASN n 1 77 TYR n 1 78 PHE n 1 79 THR n 1 80 TYR n 1 81 THR n 1 82 GLY n 1 83 SER n 1 84 GLY n 1 85 GLY n 1 86 ARG n 1 87 ASP n 1 88 LEU n 1 89 SER n 1 90 GLY n 1 91 ASN n 1 92 LYS n 1 93 ARG n 1 94 THR n 1 95 ALA n 1 96 GLY n 1 97 GLN n 1 98 SER n 1 99 SER n 1 100 ASP n 1 101 GLN n 1 102 LYS n 1 103 LEU n 1 104 THR n 1 105 ASN n 1 106 ASN n 1 107 ASN n 1 108 ARG n 1 109 ALA n 1 110 LEU n 1 111 ALA n 1 112 LEU n 1 113 ASN n 1 114 CYS n 1 115 HIS n 1 116 SER n 1 117 PRO n 1 118 ILE n 1 119 ASN n 1 120 GLU n 1 121 LYS n 1 122 GLY n 1 123 ALA n 1 124 GLU n 1 125 ALA n 1 126 GLU n 1 127 ASP n 1 128 TRP n 1 129 ARG n 1 130 GLN n 1 131 GLY n 1 132 LYS n 1 133 PRO n 1 134 VAL n 1 135 ARG n 1 136 VAL n 1 137 VAL n 1 138 ARG n 1 139 ASN n 1 140 MET n 1 141 LYS n 1 142 GLY n 1 143 GLY n 1 144 LYS n 1 145 HIS n 1 146 SER n 1 147 LYS n 1 148 TYR n 1 149 ALA n 1 150 PRO n 1 151 ALA n 1 152 GLU n 1 153 GLY n 1 154 ASN n 1 155 ARG n 1 156 TYR n 1 157 ASP n 1 158 GLY n 1 159 ILE n 1 160 TYR n 1 161 LYS n 1 162 VAL n 1 163 VAL n 1 164 LYS n 1 165 TYR n 1 166 TRP n 1 167 PRO n 1 168 GLU n 1 169 ARG n 1 170 GLY n 1 171 LYS n 1 172 SER n 1 173 GLY n 1 174 PHE n 1 175 LEU n 1 176 VAL n 1 177 TRP n 1 178 ARG n 1 179 TYR n 1 180 LEU n 1 181 LEU n 1 182 ARG n 1 183 ARG n 1 184 ASP n 1 185 ASP n 1 186 THR n 1 187 GLU n 1 188 PRO n 1 189 GLU n 1 190 PRO n 1 191 TRP n 1 192 THR n 1 193 ARG n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 ASP n 1 198 ARG n 1 199 THR n 1 200 ARG n 1 201 GLN n 1 202 LEU n 1 203 GLY n 1 204 LEU n 1 205 THR n 1 206 MET n 1 207 GLN n 1 208 TYR n 1 209 PRO n 1 210 GLU n 2 1 DC n 2 2 DA n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DG n 2 11 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DT n 3 5 DC n 3 6 5CM n 3 7 DG n 3 8 DG n 3 9 DT n 3 10 DG n 3 11 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Uhrf1, Np95' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Nucleotide Synthesis' 3 1 sample ? ? ? ? ? 'Nucleotide Synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 2ZKF 2ZKF 2 CACCGGATAGA 2 ? 2 PDB 2ZKF 2ZKF 3 CTATCCGGTGA 2 ? 3 UNP UHRF1_MOUSE Q8VDF2 1 ;KGMACVGRTTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTY TGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIY KVVKYWPERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPE ; 404 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZKF C 1 ? 11 ? 2ZKF 2 ? 12 ? 2 12 2 2 2ZKF D 1 ? 11 ? 2ZKF 2 ? 12 ? 2 12 3 3 2ZKF A 1 ? 210 ? Q8VDF2 404 ? 613 ? 404 613 # _struct_ref_seq_dif.align_id 3 _struct_ref_seq_dif.pdbx_pdb_id_code 2ZKF _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8VDF2 _struct_ref_seq_dif.db_mon_id LYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 404 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 404 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZKF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 53.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris-propane (pH7.5), 0.2M sodium fluoride, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Bis-Tris-propane ? ? ? 1 2 1 'sodium fluoride' ? ? ? 1 3 1 PEG3350 ? ? ? 1 4 1 HOH ? ? ? 1 5 2 Bis-Tris-propane ? ? ? 1 6 2 'sodium fluoride' ? ? ? 1 7 2 PEG3350 ? ? ? 1 8 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-01-25 _diffrn_detector.details undulator # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2ZKF _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.55 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 11160 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 51.232 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.171 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ZKF _refine.ls_number_reflns_obs 10594 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.46 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.21716 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2143 _refine.ls_R_factor_R_free 0.2745 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 532 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.919 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.B_iso_mean 21.456 _refine.aniso_B[1][1] 0.30 _refine.aniso_B[2][2] 0.30 _refine.aniso_B[3][3] -0.60 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2ZKD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.568 _refine.pdbx_overall_ESU_R_Free 0.320 _refine.overall_SU_ML 0.235 _refine.overall_SU_B 22.210 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1641 _refine_hist.pdbx_number_atoms_nucleic_acid 451 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 2137 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 49.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 2187 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1392 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.012 2.210 ? 3052 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.017 3.001 ? 3352 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.127 5.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.009 22.588 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.832 15.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.128 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.089 0.200 ? 313 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2158 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 412 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 462 'X-RAY DIFFRACTION' ? r_nbd_other 0.228 0.200 ? 1559 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.204 0.200 ? 991 'X-RAY DIFFRACTION' ? r_nbtor_other 0.096 0.200 ? 1070 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.163 0.200 ? 88 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.120 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.175 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.301 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.254 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.788 1.500 ? 1290 'X-RAY DIFFRACTION' ? r_mcbond_other 0.133 1.500 ? 432 'X-RAY DIFFRACTION' ? r_mcangle_it 1.057 2.000 ? 1647 'X-RAY DIFFRACTION' ? r_scbond_it 1.584 3.000 ? 1523 'X-RAY DIFFRACTION' ? r_scangle_it 2.482 4.500 ? 1405 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.551 _refine_ls_shell.d_res_low 2.617 _refine_ls_shell.number_reflns_R_work 751 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs 99.37 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZKF _struct.title 'Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZKF _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;Protein-DNA interaction, Cell cycle, Developmental protein, DNA damage, DNA repair, DNA-binding, Ligase, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation pathway, Zinc-finger ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 34 ? SER A 41 ? PHE A 437 SER A 444 1 ? 8 HELX_P HELX_P2 2 THR A 104 ? ASN A 113 ? THR A 507 ASN A 516 1 ? 10 HELX_P HELX_P3 3 ASP A 127 ? GLY A 131 ? ASP A 530 GLY A 534 5 ? 5 HELX_P HELX_P4 4 LYS A 141 ? HIS A 145 ? LYS A 544 HIS A 548 5 ? 5 HELX_P HELX_P5 5 THR A 192 ? LEU A 202 ? THR A 595 LEU A 605 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DC 5 "O3'" ? ? ? 1_555 C 5CM 6 P ? ? D DC 6 D 5CM 7 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale2 covale both ? C 5CM 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? D 5CM 7 D DG 8 1_555 ? ? ? ? ? ? ? 1.601 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 10 N1 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 10 O6 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 10 N2 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 9 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 9 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 4 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 4 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 4 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 7 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 7 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 7 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 7 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 7 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 7 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 4 N3 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 4 O4 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 3 N1 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 3 N6 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 2 N3 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 2 O4 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 1 N3 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 1 O2 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 1 N4 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 31 ? TRP A 32 ? MET A 434 TRP A 435 A 2 ASN A 154 ? ARG A 169 ? ASN A 557 ARG A 572 A 3 LEU A 175 ? ARG A 183 ? LEU A 578 ARG A 586 A 4 TYR A 77 ? THR A 81 ? TYR A 480 THR A 484 A 5 VAL A 72 ? ASP A 73 ? VAL A 475 ASP A 476 B 1 ILE A 51 ? ARG A 54 ? ILE A 454 ARG A 457 B 2 GLY A 58 ? LEU A 64 ? GLY A 461 LEU A 467 B 3 VAL A 134 ? ASN A 139 ? VAL A 537 ASN A 542 B 4 ASN A 154 ? ARG A 169 ? ASN A 557 ARG A 572 B 5 ALA A 123 ? GLU A 124 ? ALA A 526 GLU A 527 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 32 ? N TRP A 435 O ASN A 154 ? O ASN A 557 A 2 3 N TRP A 166 ? N TRP A 569 O ARG A 178 ? O ARG A 581 A 3 4 O TYR A 179 ? O TYR A 582 N TYR A 80 ? N TYR A 483 A 4 5 O THR A 79 ? O THR A 482 N VAL A 72 ? N VAL A 475 B 1 2 N HIS A 52 ? N HIS A 455 O SER A 61 ? O SER A 464 B 2 3 N LEU A 62 ? N LEU A 465 O VAL A 137 ? O VAL A 540 B 3 4 N VAL A 134 ? N VAL A 537 O TYR A 160 ? O TYR A 563 B 4 5 O TYR A 165 ? O TYR A 568 N ALA A 123 ? N ALA A 526 # _database_PDB_matrix.entry_id 2ZKF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZKF _atom_sites.fract_transf_matrix[1][1] 0.016984 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016984 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005485 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 404 ? ? ? A . n A 1 2 GLY 2 405 405 GLY GLY A . n A 1 3 MET 3 406 406 MET MET A . n A 1 4 ALA 4 407 407 ALA ALA A . n A 1 5 CYS 5 408 408 CYS CYS A . n A 1 6 VAL 6 409 409 VAL VAL A . n A 1 7 GLY 7 410 410 GLY GLY A . n A 1 8 ARG 8 411 411 ARG ARG A . n A 1 9 THR 9 412 412 THR THR A . n A 1 10 THR 10 413 413 THR THR A . n A 1 11 GLU 11 414 414 GLU GLU A . n A 1 12 CYS 12 415 415 CYS CYS A . n A 1 13 THR 13 416 416 THR THR A . n A 1 14 ILE 14 417 417 ILE ILE A . n A 1 15 VAL 15 418 418 VAL VAL A . n A 1 16 PRO 16 419 419 PRO PRO A . n A 1 17 ALA 17 420 420 ALA ALA A . n A 1 18 ASN 18 421 421 ASN ASN A . n A 1 19 HIS 19 422 422 HIS HIS A . n A 1 20 PHE 20 423 423 PHE PHE A . n A 1 21 GLY 21 424 424 GLY GLY A . n A 1 22 PRO 22 425 425 PRO PRO A . n A 1 23 ILE 23 426 426 ILE ILE A . n A 1 24 PRO 24 427 427 PRO PRO A . n A 1 25 GLY 25 428 428 GLY GLY A . n A 1 26 VAL 26 429 429 VAL VAL A . n A 1 27 PRO 27 430 430 PRO PRO A . n A 1 28 VAL 28 431 431 VAL VAL A . n A 1 29 GLY 29 432 432 GLY GLY A . n A 1 30 THR 30 433 433 THR THR A . n A 1 31 MET 31 434 434 MET MET A . n A 1 32 TRP 32 435 435 TRP TRP A . n A 1 33 ARG 33 436 436 ARG ARG A . n A 1 34 PHE 34 437 437 PHE PHE A . n A 1 35 ARG 35 438 438 ARG ARG A . n A 1 36 VAL 36 439 439 VAL VAL A . n A 1 37 GLN 37 440 440 GLN GLN A . n A 1 38 VAL 38 441 441 VAL VAL A . n A 1 39 SER 39 442 442 SER SER A . n A 1 40 GLU 40 443 443 GLU GLU A . n A 1 41 SER 41 444 444 SER SER A . n A 1 42 GLY 42 445 445 GLY GLY A . n A 1 43 VAL 43 446 446 VAL VAL A . n A 1 44 HIS 44 447 447 HIS HIS A . n A 1 45 ARG 45 448 448 ARG ARG A . n A 1 46 PRO 46 449 449 PRO PRO A . n A 1 47 HIS 47 450 450 HIS HIS A . n A 1 48 VAL 48 451 451 VAL VAL A . n A 1 49 ALA 49 452 452 ALA ALA A . n A 1 50 GLY 50 453 453 GLY GLY A . n A 1 51 ILE 51 454 454 ILE ILE A . n A 1 52 HIS 52 455 455 HIS HIS A . n A 1 53 GLY 53 456 456 GLY GLY A . n A 1 54 ARG 54 457 457 ARG ARG A . n A 1 55 SER 55 458 458 SER SER A . n A 1 56 ASN 56 459 459 ASN ASN A . n A 1 57 ASP 57 460 460 ASP ASP A . n A 1 58 GLY 58 461 461 GLY GLY A . n A 1 59 ALA 59 462 462 ALA ALA A . n A 1 60 TYR 60 463 463 TYR TYR A . n A 1 61 SER 61 464 464 SER SER A . n A 1 62 LEU 62 465 465 LEU LEU A . n A 1 63 VAL 63 466 466 VAL VAL A . n A 1 64 LEU 64 467 467 LEU LEU A . n A 1 65 ALA 65 468 468 ALA ALA A . n A 1 66 GLY 66 469 469 GLY GLY A . n A 1 67 GLY 67 470 470 GLY GLY A . n A 1 68 TYR 68 471 471 TYR TYR A . n A 1 69 GLU 69 472 472 GLU GLU A . n A 1 70 ASP 70 473 473 ASP ASP A . n A 1 71 ASP 71 474 474 ASP ASP A . n A 1 72 VAL 72 475 475 VAL VAL A . n A 1 73 ASP 73 476 476 ASP ASP A . n A 1 74 ASN 74 477 477 ASN ASN A . n A 1 75 GLY 75 478 478 GLY GLY A . n A 1 76 ASN 76 479 479 ASN ASN A . n A 1 77 TYR 77 480 480 TYR TYR A . n A 1 78 PHE 78 481 481 PHE PHE A . n A 1 79 THR 79 482 482 THR THR A . n A 1 80 TYR 80 483 483 TYR TYR A . n A 1 81 THR 81 484 484 THR THR A . n A 1 82 GLY 82 485 485 GLY GLY A . n A 1 83 SER 83 486 486 SER SER A . n A 1 84 GLY 84 487 487 GLY GLY A . n A 1 85 GLY 85 488 488 GLY GLY A . n A 1 86 ARG 86 489 489 ARG ARG A . n A 1 87 ASP 87 490 490 ASP ASP A . n A 1 88 LEU 88 491 491 LEU LEU A . n A 1 89 SER 89 492 492 SER SER A . n A 1 90 GLY 90 493 493 GLY GLY A . n A 1 91 ASN 91 494 494 ASN ASN A . n A 1 92 LYS 92 495 495 LYS LYS A . n A 1 93 ARG 93 496 496 ARG ARG A . n A 1 94 THR 94 497 497 THR THR A . n A 1 95 ALA 95 498 498 ALA ALA A . n A 1 96 GLY 96 499 499 GLY GLY A . n A 1 97 GLN 97 500 500 GLN GLN A . n A 1 98 SER 98 501 501 SER SER A . n A 1 99 SER 99 502 502 SER SER A . n A 1 100 ASP 100 503 503 ASP ASP A . n A 1 101 GLN 101 504 504 GLN GLN A . n A 1 102 LYS 102 505 505 LYS LYS A . n A 1 103 LEU 103 506 506 LEU LEU A . n A 1 104 THR 104 507 507 THR THR A . n A 1 105 ASN 105 508 508 ASN ASN A . n A 1 106 ASN 106 509 509 ASN ASN A . n A 1 107 ASN 107 510 510 ASN ASN A . n A 1 108 ARG 108 511 511 ARG ARG A . n A 1 109 ALA 109 512 512 ALA ALA A . n A 1 110 LEU 110 513 513 LEU LEU A . n A 1 111 ALA 111 514 514 ALA ALA A . n A 1 112 LEU 112 515 515 LEU LEU A . n A 1 113 ASN 113 516 516 ASN ASN A . n A 1 114 CYS 114 517 517 CYS CYS A . n A 1 115 HIS 115 518 518 HIS HIS A . n A 1 116 SER 116 519 519 SER SER A . n A 1 117 PRO 117 520 520 PRO PRO A . n A 1 118 ILE 118 521 521 ILE ILE A . n A 1 119 ASN 119 522 522 ASN ASN A . n A 1 120 GLU 120 523 523 GLU GLU A . n A 1 121 LYS 121 524 524 LYS LYS A . n A 1 122 GLY 122 525 525 GLY GLY A . n A 1 123 ALA 123 526 526 ALA ALA A . n A 1 124 GLU 124 527 527 GLU GLU A . n A 1 125 ALA 125 528 528 ALA ALA A . n A 1 126 GLU 126 529 529 GLU GLU A . n A 1 127 ASP 127 530 530 ASP ASP A . n A 1 128 TRP 128 531 531 TRP TRP A . n A 1 129 ARG 129 532 532 ARG ARG A . n A 1 130 GLN 130 533 533 GLN GLN A . n A 1 131 GLY 131 534 534 GLY GLY A . n A 1 132 LYS 132 535 535 LYS LYS A . n A 1 133 PRO 133 536 536 PRO PRO A . n A 1 134 VAL 134 537 537 VAL VAL A . n A 1 135 ARG 135 538 538 ARG ARG A . n A 1 136 VAL 136 539 539 VAL VAL A . n A 1 137 VAL 137 540 540 VAL VAL A . n A 1 138 ARG 138 541 541 ARG ARG A . n A 1 139 ASN 139 542 542 ASN ASN A . n A 1 140 MET 140 543 543 MET MET A . n A 1 141 LYS 141 544 544 LYS LYS A . n A 1 142 GLY 142 545 545 GLY GLY A . n A 1 143 GLY 143 546 546 GLY GLY A . n A 1 144 LYS 144 547 547 LYS LYS A . n A 1 145 HIS 145 548 548 HIS HIS A . n A 1 146 SER 146 549 549 SER SER A . n A 1 147 LYS 147 550 550 LYS LYS A . n A 1 148 TYR 148 551 551 TYR TYR A . n A 1 149 ALA 149 552 552 ALA ALA A . n A 1 150 PRO 150 553 553 PRO PRO A . n A 1 151 ALA 151 554 554 ALA ALA A . n A 1 152 GLU 152 555 555 GLU GLU A . n A 1 153 GLY 153 556 556 GLY GLY A . n A 1 154 ASN 154 557 557 ASN ASN A . n A 1 155 ARG 155 558 558 ARG ARG A . n A 1 156 TYR 156 559 559 TYR TYR A . n A 1 157 ASP 157 560 560 ASP ASP A . n A 1 158 GLY 158 561 561 GLY GLY A . n A 1 159 ILE 159 562 562 ILE ILE A . n A 1 160 TYR 160 563 563 TYR TYR A . n A 1 161 LYS 161 564 564 LYS LYS A . n A 1 162 VAL 162 565 565 VAL VAL A . n A 1 163 VAL 163 566 566 VAL VAL A . n A 1 164 LYS 164 567 567 LYS LYS A . n A 1 165 TYR 165 568 568 TYR TYR A . n A 1 166 TRP 166 569 569 TRP TRP A . n A 1 167 PRO 167 570 570 PRO PRO A . n A 1 168 GLU 168 571 571 GLU GLU A . n A 1 169 ARG 169 572 572 ARG ARG A . n A 1 170 GLY 170 573 573 GLY GLY A . n A 1 171 LYS 171 574 574 LYS LYS A . n A 1 172 SER 172 575 575 SER SER A . n A 1 173 GLY 173 576 576 GLY GLY A . n A 1 174 PHE 174 577 577 PHE PHE A . n A 1 175 LEU 175 578 578 LEU LEU A . n A 1 176 VAL 176 579 579 VAL VAL A . n A 1 177 TRP 177 580 580 TRP TRP A . n A 1 178 ARG 178 581 581 ARG ARG A . n A 1 179 TYR 179 582 582 TYR TYR A . n A 1 180 LEU 180 583 583 LEU LEU A . n A 1 181 LEU 181 584 584 LEU LEU A . n A 1 182 ARG 182 585 585 ARG ARG A . n A 1 183 ARG 183 586 586 ARG ARG A . n A 1 184 ASP 184 587 587 ASP ASP A . n A 1 185 ASP 185 588 588 ASP ASP A . n A 1 186 THR 186 589 589 THR THR A . n A 1 187 GLU 187 590 590 GLU GLU A . n A 1 188 PRO 188 591 591 PRO PRO A . n A 1 189 GLU 189 592 592 GLU GLU A . n A 1 190 PRO 190 593 593 PRO PRO A . n A 1 191 TRP 191 594 594 TRP TRP A . n A 1 192 THR 192 595 595 THR THR A . n A 1 193 ARG 193 596 596 ARG ARG A . n A 1 194 GLU 194 597 597 GLU GLU A . n A 1 195 GLY 195 598 598 GLY GLY A . n A 1 196 LYS 196 599 599 LYS LYS A . n A 1 197 ASP 197 600 600 ASP ASP A . n A 1 198 ARG 198 601 601 ARG ARG A . n A 1 199 THR 199 602 602 THR THR A . n A 1 200 ARG 200 603 603 ARG ARG A . n A 1 201 GLN 201 604 604 GLN GLN A . n A 1 202 LEU 202 605 605 LEU LEU A . n A 1 203 GLY 203 606 606 GLY GLY A . n A 1 204 LEU 204 607 607 LEU LEU A . n A 1 205 THR 205 608 608 THR THR A . n A 1 206 MET 206 609 609 MET MET A . n A 1 207 GLN 207 610 610 GLN GLN A . n A 1 208 TYR 208 611 611 TYR TYR A . n A 1 209 PRO 209 612 612 PRO PRO A . n A 1 210 GLU 210 613 613 GLU GLU A . n B 2 1 DC 1 2 2 DC C C . n B 2 2 DA 2 3 3 DA A C . n B 2 3 DC 3 4 4 DC C C . n B 2 4 DC 4 5 5 DC C C . n B 2 5 DG 5 6 6 DG G C . n B 2 6 DG 6 7 7 DG G C . n B 2 7 DA 7 8 8 DA A C . n B 2 8 DT 8 9 9 DT T C . n B 2 9 DA 9 10 10 DA A C . n B 2 10 DG 10 11 11 DG G C . n B 2 11 DA 11 12 12 DA A C . n C 3 1 DC 1 2 2 DC C D . n C 3 2 DT 2 3 3 DT T D . n C 3 3 DA 3 4 4 DA A D . n C 3 4 DT 4 5 5 DT T D . n C 3 5 DC 5 6 6 DC C D . n C 3 6 5CM 6 7 7 5CM 5MC D . n C 3 7 DG 7 8 8 DG G D . n C 3 8 DG 8 9 9 DG G D . n C 3 9 DT 9 10 10 DT T D . n C 3 10 DG 10 11 11 DG G D . n C 3 11 DA 11 12 12 DA A D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 17 17 HOH HOH A . D 4 HOH 17 18 18 HOH HOH A . D 4 HOH 18 19 19 HOH HOH A . D 4 HOH 19 21 21 HOH HOH A . D 4 HOH 20 22 22 HOH HOH A . D 4 HOH 21 23 23 HOH HOH A . D 4 HOH 22 24 24 HOH HOH A . D 4 HOH 23 25 25 HOH HOH A . D 4 HOH 24 26 26 HOH HOH A . D 4 HOH 25 27 27 HOH HOH A . D 4 HOH 26 28 28 HOH HOH A . D 4 HOH 27 29 29 HOH HOH A . D 4 HOH 28 30 30 HOH HOH A . D 4 HOH 29 31 31 HOH HOH A . D 4 HOH 30 32 32 HOH HOH A . D 4 HOH 31 34 34 HOH HOH A . D 4 HOH 32 36 36 HOH HOH A . D 4 HOH 33 37 37 HOH HOH A . D 4 HOH 34 38 38 HOH HOH A . D 4 HOH 35 39 39 HOH HOH A . D 4 HOH 36 40 40 HOH HOH A . D 4 HOH 37 41 41 HOH HOH A . D 4 HOH 38 43 43 HOH HOH A . D 4 HOH 39 44 44 HOH HOH A . D 4 HOH 40 45 45 HOH HOH A . D 4 HOH 41 46 46 HOH HOH A . E 4 HOH 1 20 20 HOH HOH C . F 4 HOH 1 16 16 HOH HOH D . F 4 HOH 2 33 33 HOH HOH D . F 4 HOH 3 35 35 HOH HOH D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id D _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4350 ? 1 MORE -13.4 ? 1 'SSA (A^2)' 12080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 43 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-01-11 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.9604 -11.9558 -15.5114 0.0235 0.0696 0.0462 -0.0165 -0.0024 0.0295 1.1093 0.6688 1.5104 -0.2186 0.6751 -0.3538 -0.0695 0.0123 -0.0025 0.0294 0.0577 0.0101 -0.0639 -0.0938 0.0118 'X-RAY DIFFRACTION' 2 ? refined 15.8382 -12.4519 3.1956 -0.0022 0.0534 -0.0149 0.1038 -0.0193 0.0721 8.4447 2.8805 7.0388 2.1812 3.3948 1.6345 0.4351 -0.4207 -0.3283 0.3449 -0.5185 -0.2732 0.3286 -0.6326 0.0834 'X-RAY DIFFRACTION' 3 ? refined 18.9351 -9.2740 2.5323 -0.0505 0.1143 0.0384 0.0545 -0.0551 0.0260 4.6436 2.3266 5.6048 3.1949 1.5355 1.8134 0.0143 -0.4614 0.1231 -0.0820 -0.4539 -0.2371 -0.2356 -0.5252 0.4396 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 406 A 3 A 613 A 210 ? 'X-RAY DIFFRACTION' ? 2 2 C 2 B 1 C 12 B 11 ? 'X-RAY DIFFRACTION' ? 3 3 D 2 C 1 D 12 C 11 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P C DC 2 ? ? OP3 C DC 2 ? ? 1.486 1.607 -0.121 0.012 N 2 1 "O3'" C DC 5 ? ? "C3'" C DC 5 ? ? 1.369 1.419 -0.050 0.006 N 3 1 "O3'" C DG 11 ? ? "C3'" C DG 11 ? ? 1.366 1.419 -0.053 0.006 N 4 1 "O3'" D DT 10 ? ? "C3'" D DT 10 ? ? 1.377 1.419 -0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 448 ? ? CZ A ARG 448 ? ? NH2 A ARG 448 ? ? 117.17 120.30 -3.13 0.50 N 2 1 NE A ARG 596 ? ? CZ A ARG 596 ? ? NH1 A ARG 596 ? ? 125.32 120.30 5.02 0.50 N 3 1 NE A ARG 596 ? ? CZ A ARG 596 ? ? NH2 A ARG 596 ? ? 116.82 120.30 -3.48 0.50 N 4 1 OP1 C DC 2 ? ? P C DC 2 ? ? OP2 C DC 2 ? ? 105.26 119.60 -14.34 1.50 N 5 1 "O4'" C DA 3 ? ? "C1'" C DA 3 ? ? N9 C DA 3 ? ? 101.52 108.00 -6.48 0.70 N 6 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? N1 C DC 4 ? ? 110.90 108.30 2.60 0.30 N 7 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 102.62 108.00 -5.38 0.70 N 8 1 "C3'" C DG 6 ? ? "C2'" C DG 6 ? ? "C1'" C DG 6 ? ? 96.78 102.40 -5.62 0.80 N 9 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 103.26 108.00 -4.74 0.70 N 10 1 "O4'" C DT 9 ? ? "C1'" C DT 9 ? ? N1 C DT 9 ? ? 102.82 108.00 -5.18 0.70 N 11 1 "O4'" C DA 10 ? ? "C1'" C DA 10 ? ? N9 C DA 10 ? ? 101.89 108.00 -6.11 0.70 N 12 1 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 111.50 108.30 3.20 0.30 N 13 1 "O4'" D DT 3 ? ? "C1'" D DT 3 ? ? N1 D DT 3 ? ? 102.57 108.00 -5.43 0.70 N 14 1 N3 D DT 5 ? ? C2 D DT 5 ? ? O2 D DT 5 ? ? 118.16 122.30 -4.14 0.60 N 15 1 C4 D DT 5 ? ? C5 D DT 5 ? ? C7 D DT 5 ? ? 123.20 119.00 4.20 0.60 N 16 1 C6 D DT 5 ? ? C5 D DT 5 ? ? C7 D DT 5 ? ? 119.20 122.90 -3.70 0.60 N 17 1 "O4'" D DG 8 ? ? "C1'" D DG 8 ? ? N9 D DG 8 ? ? 102.03 108.00 -5.97 0.70 N 18 1 N3 D DG 8 ? ? C2 D DG 8 ? ? N2 D DG 8 ? ? 125.31 119.90 5.41 0.70 N 19 1 "O4'" D DG 9 ? ? "C1'" D DG 9 ? ? N9 D DG 9 ? ? 110.98 108.30 2.68 0.30 N 20 1 P D DT 10 ? ? "O5'" D DT 10 ? ? "C5'" D DT 10 ? ? 109.51 120.90 -11.39 1.60 N 21 1 C4 D DT 10 ? ? C5 D DT 10 ? ? C7 D DT 10 ? ? 122.92 119.00 3.92 0.60 N 22 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 101.21 108.00 -6.79 0.70 N 23 1 "C3'" D DG 11 ? ? "O3'" D DG 11 ? ? P D DA 12 ? ? 127.16 119.70 7.46 1.20 Y 24 1 "O4'" D DA 12 ? ? "C1'" D DA 12 ? ? N9 D DA 12 ? ? 111.65 108.30 3.35 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 413 ? ? -130.58 -158.80 2 1 ILE A 417 ? ? -9.44 -60.85 3 1 ASN A 421 ? ? -105.41 41.15 4 1 ASP A 460 ? ? -136.94 -60.29 5 1 ASN A 508 ? ? 57.58 -130.36 6 1 SER A 519 ? ? -178.49 139.91 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 404 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 MET N N N N 410 MET CA C N S 411 MET C C N N 412 MET O O N N 413 MET CB C N N 414 MET CG C N N 415 MET SD S N N 416 MET CE C N N 417 MET OXT O N N 418 MET H H N N 419 MET H2 H N N 420 MET HA H N N 421 MET HB2 H N N 422 MET HB3 H N N 423 MET HG2 H N N 424 MET HG3 H N N 425 MET HE1 H N N 426 MET HE2 H N N 427 MET HE3 H N N 428 MET HXT H N N 429 PHE N N N N 430 PHE CA C N S 431 PHE C C N N 432 PHE O O N N 433 PHE CB C N N 434 PHE CG C Y N 435 PHE CD1 C Y N 436 PHE CD2 C Y N 437 PHE CE1 C Y N 438 PHE CE2 C Y N 439 PHE CZ C Y N 440 PHE OXT O N N 441 PHE H H N N 442 PHE H2 H N N 443 PHE HA H N N 444 PHE HB2 H N N 445 PHE HB3 H N N 446 PHE HD1 H N N 447 PHE HD2 H N N 448 PHE HE1 H N N 449 PHE HE2 H N N 450 PHE HZ H N N 451 PHE HXT H N N 452 PRO N N N N 453 PRO CA C N S 454 PRO C C N N 455 PRO O O N N 456 PRO CB C N N 457 PRO CG C N N 458 PRO CD C N N 459 PRO OXT O N N 460 PRO H H N N 461 PRO HA H N N 462 PRO HB2 H N N 463 PRO HB3 H N N 464 PRO HG2 H N N 465 PRO HG3 H N N 466 PRO HD2 H N N 467 PRO HD3 H N N 468 PRO HXT H N N 469 SER N N N N 470 SER CA C N S 471 SER C C N N 472 SER O O N N 473 SER CB C N N 474 SER OG O N N 475 SER OXT O N N 476 SER H H N N 477 SER H2 H N N 478 SER HA H N N 479 SER HB2 H N N 480 SER HB3 H N N 481 SER HG H N N 482 SER HXT H N N 483 THR N N N N 484 THR CA C N S 485 THR C C N N 486 THR O O N N 487 THR CB C N R 488 THR OG1 O N N 489 THR CG2 C N N 490 THR OXT O N N 491 THR H H N N 492 THR H2 H N N 493 THR HA H N N 494 THR HB H N N 495 THR HG1 H N N 496 THR HG21 H N N 497 THR HG22 H N N 498 THR HG23 H N N 499 THR HXT H N N 500 TRP N N N N 501 TRP CA C N S 502 TRP C C N N 503 TRP O O N N 504 TRP CB C N N 505 TRP CG C Y N 506 TRP CD1 C Y N 507 TRP CD2 C Y N 508 TRP NE1 N Y N 509 TRP CE2 C Y N 510 TRP CE3 C Y N 511 TRP CZ2 C Y N 512 TRP CZ3 C Y N 513 TRP CH2 C Y N 514 TRP OXT O N N 515 TRP H H N N 516 TRP H2 H N N 517 TRP HA H N N 518 TRP HB2 H N N 519 TRP HB3 H N N 520 TRP HD1 H N N 521 TRP HE1 H N N 522 TRP HE3 H N N 523 TRP HZ2 H N N 524 TRP HZ3 H N N 525 TRP HH2 H N N 526 TRP HXT H N N 527 TYR N N N N 528 TYR CA C N S 529 TYR C C N N 530 TYR O O N N 531 TYR CB C N N 532 TYR CG C Y N 533 TYR CD1 C Y N 534 TYR CD2 C Y N 535 TYR CE1 C Y N 536 TYR CE2 C Y N 537 TYR CZ C Y N 538 TYR OH O N N 539 TYR OXT O N N 540 TYR H H N N 541 TYR H2 H N N 542 TYR HA H N N 543 TYR HB2 H N N 544 TYR HB3 H N N 545 TYR HD1 H N N 546 TYR HD2 H N N 547 TYR HE1 H N N 548 TYR HE2 H N N 549 TYR HH H N N 550 TYR HXT H N N 551 VAL N N N N 552 VAL CA C N S 553 VAL C C N N 554 VAL O O N N 555 VAL CB C N N 556 VAL CG1 C N N 557 VAL CG2 C N N 558 VAL OXT O N N 559 VAL H H N N 560 VAL H2 H N N 561 VAL HA H N N 562 VAL HB H N N 563 VAL HG11 H N N 564 VAL HG12 H N N 565 VAL HG13 H N N 566 VAL HG21 H N N 567 VAL HG22 H N N 568 VAL HG23 H N N 569 VAL HXT H N N 570 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 HIS N CA sing N N 316 HIS N H sing N N 317 HIS N H2 sing N N 318 HIS CA C sing N N 319 HIS CA CB sing N N 320 HIS CA HA sing N N 321 HIS C O doub N N 322 HIS C OXT sing N N 323 HIS CB CG sing N N 324 HIS CB HB2 sing N N 325 HIS CB HB3 sing N N 326 HIS CG ND1 sing Y N 327 HIS CG CD2 doub Y N 328 HIS ND1 CE1 doub Y N 329 HIS ND1 HD1 sing N N 330 HIS CD2 NE2 sing Y N 331 HIS CD2 HD2 sing N N 332 HIS CE1 NE2 sing Y N 333 HIS CE1 HE1 sing N N 334 HIS NE2 HE2 sing N N 335 HIS OXT HXT sing N N 336 HOH O H1 sing N N 337 HOH O H2 sing N N 338 ILE N CA sing N N 339 ILE N H sing N N 340 ILE N H2 sing N N 341 ILE CA C sing N N 342 ILE CA CB sing N N 343 ILE CA HA sing N N 344 ILE C O doub N N 345 ILE C OXT sing N N 346 ILE CB CG1 sing N N 347 ILE CB CG2 sing N N 348 ILE CB HB sing N N 349 ILE CG1 CD1 sing N N 350 ILE CG1 HG12 sing N N 351 ILE CG1 HG13 sing N N 352 ILE CG2 HG21 sing N N 353 ILE CG2 HG22 sing N N 354 ILE CG2 HG23 sing N N 355 ILE CD1 HD11 sing N N 356 ILE CD1 HD12 sing N N 357 ILE CD1 HD13 sing N N 358 ILE OXT HXT sing N N 359 LEU N CA sing N N 360 LEU N H sing N N 361 LEU N H2 sing N N 362 LEU CA C sing N N 363 LEU CA CB sing N N 364 LEU CA HA sing N N 365 LEU C O doub N N 366 LEU C OXT sing N N 367 LEU CB CG sing N N 368 LEU CB HB2 sing N N 369 LEU CB HB3 sing N N 370 LEU CG CD1 sing N N 371 LEU CG CD2 sing N N 372 LEU CG HG sing N N 373 LEU CD1 HD11 sing N N 374 LEU CD1 HD12 sing N N 375 LEU CD1 HD13 sing N N 376 LEU CD2 HD21 sing N N 377 LEU CD2 HD22 sing N N 378 LEU CD2 HD23 sing N N 379 LEU OXT HXT sing N N 380 LYS N CA sing N N 381 LYS N H sing N N 382 LYS N H2 sing N N 383 LYS CA C sing N N 384 LYS CA CB sing N N 385 LYS CA HA sing N N 386 LYS C O doub N N 387 LYS C OXT sing N N 388 LYS CB CG sing N N 389 LYS CB HB2 sing N N 390 LYS CB HB3 sing N N 391 LYS CG CD sing N N 392 LYS CG HG2 sing N N 393 LYS CG HG3 sing N N 394 LYS CD CE sing N N 395 LYS CD HD2 sing N N 396 LYS CD HD3 sing N N 397 LYS CE NZ sing N N 398 LYS CE HE2 sing N N 399 LYS CE HE3 sing N N 400 LYS NZ HZ1 sing N N 401 LYS NZ HZ2 sing N N 402 LYS NZ HZ3 sing N N 403 LYS OXT HXT sing N N 404 MET N CA sing N N 405 MET N H sing N N 406 MET N H2 sing N N 407 MET CA C sing N N 408 MET CA CB sing N N 409 MET CA HA sing N N 410 MET C O doub N N 411 MET C OXT sing N N 412 MET CB CG sing N N 413 MET CB HB2 sing N N 414 MET CB HB3 sing N N 415 MET CG SD sing N N 416 MET CG HG2 sing N N 417 MET CG HG3 sing N N 418 MET SD CE sing N N 419 MET CE HE1 sing N N 420 MET CE HE2 sing N N 421 MET CE HE3 sing N N 422 MET OXT HXT sing N N 423 PHE N CA sing N N 424 PHE N H sing N N 425 PHE N H2 sing N N 426 PHE CA C sing N N 427 PHE CA CB sing N N 428 PHE CA HA sing N N 429 PHE C O doub N N 430 PHE C OXT sing N N 431 PHE CB CG sing N N 432 PHE CB HB2 sing N N 433 PHE CB HB3 sing N N 434 PHE CG CD1 doub Y N 435 PHE CG CD2 sing Y N 436 PHE CD1 CE1 sing Y N 437 PHE CD1 HD1 sing N N 438 PHE CD2 CE2 doub Y N 439 PHE CD2 HD2 sing N N 440 PHE CE1 CZ doub Y N 441 PHE CE1 HE1 sing N N 442 PHE CE2 CZ sing Y N 443 PHE CE2 HE2 sing N N 444 PHE CZ HZ sing N N 445 PHE OXT HXT sing N N 446 PRO N CA sing N N 447 PRO N CD sing N N 448 PRO N H sing N N 449 PRO CA C sing N N 450 PRO CA CB sing N N 451 PRO CA HA sing N N 452 PRO C O doub N N 453 PRO C OXT sing N N 454 PRO CB CG sing N N 455 PRO CB HB2 sing N N 456 PRO CB HB3 sing N N 457 PRO CG CD sing N N 458 PRO CG HG2 sing N N 459 PRO CG HG3 sing N N 460 PRO CD HD2 sing N N 461 PRO CD HD3 sing N N 462 PRO OXT HXT sing N N 463 SER N CA sing N N 464 SER N H sing N N 465 SER N H2 sing N N 466 SER CA C sing N N 467 SER CA CB sing N N 468 SER CA HA sing N N 469 SER C O doub N N 470 SER C OXT sing N N 471 SER CB OG sing N N 472 SER CB HB2 sing N N 473 SER CB HB3 sing N N 474 SER OG HG sing N N 475 SER OXT HXT sing N N 476 THR N CA sing N N 477 THR N H sing N N 478 THR N H2 sing N N 479 THR CA C sing N N 480 THR CA CB sing N N 481 THR CA HA sing N N 482 THR C O doub N N 483 THR C OXT sing N N 484 THR CB OG1 sing N N 485 THR CB CG2 sing N N 486 THR CB HB sing N N 487 THR OG1 HG1 sing N N 488 THR CG2 HG21 sing N N 489 THR CG2 HG22 sing N N 490 THR CG2 HG23 sing N N 491 THR OXT HXT sing N N 492 TRP N CA sing N N 493 TRP N H sing N N 494 TRP N H2 sing N N 495 TRP CA C sing N N 496 TRP CA CB sing N N 497 TRP CA HA sing N N 498 TRP C O doub N N 499 TRP C OXT sing N N 500 TRP CB CG sing N N 501 TRP CB HB2 sing N N 502 TRP CB HB3 sing N N 503 TRP CG CD1 doub Y N 504 TRP CG CD2 sing Y N 505 TRP CD1 NE1 sing Y N 506 TRP CD1 HD1 sing N N 507 TRP CD2 CE2 doub Y N 508 TRP CD2 CE3 sing Y N 509 TRP NE1 CE2 sing Y N 510 TRP NE1 HE1 sing N N 511 TRP CE2 CZ2 sing Y N 512 TRP CE3 CZ3 doub Y N 513 TRP CE3 HE3 sing N N 514 TRP CZ2 CH2 doub Y N 515 TRP CZ2 HZ2 sing N N 516 TRP CZ3 CH2 sing Y N 517 TRP CZ3 HZ3 sing N N 518 TRP CH2 HH2 sing N N 519 TRP OXT HXT sing N N 520 TYR N CA sing N N 521 TYR N H sing N N 522 TYR N H2 sing N N 523 TYR CA C sing N N 524 TYR CA CB sing N N 525 TYR CA HA sing N N 526 TYR C O doub N N 527 TYR C OXT sing N N 528 TYR CB CG sing N N 529 TYR CB HB2 sing N N 530 TYR CB HB3 sing N N 531 TYR CG CD1 doub Y N 532 TYR CG CD2 sing Y N 533 TYR CD1 CE1 sing Y N 534 TYR CD1 HD1 sing N N 535 TYR CD2 CE2 doub Y N 536 TYR CD2 HD2 sing N N 537 TYR CE1 CZ doub Y N 538 TYR CE1 HE1 sing N N 539 TYR CE2 CZ sing Y N 540 TYR CE2 HE2 sing N N 541 TYR CZ OH sing N N 542 TYR OH HH sing N N 543 TYR OXT HXT sing N N 544 VAL N CA sing N N 545 VAL N H sing N N 546 VAL N H2 sing N N 547 VAL CA C sing N N 548 VAL CA CB sing N N 549 VAL CA HA sing N N 550 VAL C O doub N N 551 VAL C OXT sing N N 552 VAL CB CG1 sing N N 553 VAL CB CG2 sing N N 554 VAL CB HB sing N N 555 VAL CG1 HG11 sing N N 556 VAL CG1 HG12 sing N N 557 VAL CG1 HG13 sing N N 558 VAL CG2 HG21 sing N N 559 VAL CG2 HG22 sing N N 560 VAL CG2 HG23 sing N N 561 VAL OXT HXT sing N N 562 # _ndb_struct_conf_na.entry_id 2ZKF _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 10 1_555 0.008 -0.295 -0.669 -11.411 7.064 -8.285 1 C_DC2:DG11_D C 2 ? D 11 ? 19 1 1 B DA 2 1_555 C DT 9 1_555 -0.211 -0.272 0.194 4.844 -2.372 -0.176 2 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 B DC 3 1_555 C DG 8 1_555 0.016 0.002 -0.166 8.990 -1.712 0.934 3 C_DC4:DG9_D C 4 ? D 9 ? 19 1 1 B DC 4 1_555 C DG 7 1_555 0.525 -0.071 -0.228 16.247 -28.127 1.996 4 C_DC5:DG8_D C 5 ? D 8 ? 19 1 1 B DG 6 1_555 C DC 5 1_555 -0.544 -0.353 -0.252 0.370 2.122 -4.554 5 C_DG7:DC6_D C 7 ? D 6 ? 19 1 1 B DA 7 1_555 C DT 4 1_555 -0.015 0.051 -0.084 4.243 -8.437 -0.417 6 C_DA8:DT5_D C 8 ? D 5 ? 20 1 1 B DT 8 1_555 C DA 3 1_555 -0.002 -0.050 -0.051 5.668 -6.369 2.073 7 C_DT9:DA4_D C 9 ? D 4 ? 20 1 1 B DA 9 1_555 C DT 2 1_555 0.171 -0.205 -0.422 9.685 -3.021 -4.799 8 C_DA10:DT3_D C 10 ? D 3 ? 20 1 1 B DG 10 1_555 C DC 1 1_555 1.031 0.032 -0.104 12.688 -11.137 -6.784 9 C_DG11:DC2_D C 11 ? D 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 10 1_555 B DA 2 1_555 C DT 9 1_555 -0.261 2.191 3.178 -12.652 6.674 38.352 2.375 -1.077 3.414 9.755 18.493 40.839 1 CC_DC2DA3:DT10DG11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 B DA 2 1_555 C DT 9 1_555 B DC 3 1_555 C DG 8 1_555 0.330 -0.243 3.268 2.339 -0.906 27.790 -0.288 -0.125 3.290 -1.881 -4.857 27.901 2 CC_DA3DC4:DG9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 B DC 3 1_555 C DG 8 1_555 B DC 4 1_555 C DG 7 1_555 -1.432 0.971 3.169 -0.390 -4.619 40.147 1.901 2.031 3.056 -6.701 0.566 40.402 3 CC_DC4DC5:DG8DG9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 B DG 6 1_555 C DC 5 1_555 B DA 7 1_555 C DT 4 1_555 -0.699 0.221 3.468 -3.006 10.073 32.505 -1.351 0.675 3.432 17.435 5.203 34.119 4 CC_DG7DA8:DT5DC6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 B DA 7 1_555 C DT 4 1_555 B DT 8 1_555 C DA 3 1_555 0.171 -0.464 3.225 -0.352 3.819 31.344 -1.546 -0.377 3.146 7.036 0.649 31.571 5 CC_DA8DT9:DA4DT5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 B DT 8 1_555 C DA 3 1_555 B DA 9 1_555 C DT 2 1_555 0.027 0.711 3.276 3.853 2.406 37.814 0.781 0.451 3.300 3.696 -5.918 38.076 6 CC_DT9DA10:DT3DA4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 B DA 9 1_555 C DT 2 1_555 B DG 10 1_555 C DC 1 1_555 -0.027 -0.009 3.228 -3.856 7.621 36.515 -1.001 -0.458 3.150 11.963 6.053 37.468 7 CC_DA10DG11:DC2DT3_DD C 10 ? D 3 ? C 11 ? D 2 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ZKD _pdbx_initial_refinement_model.details 'PDB ENTRY 2ZKD' #