HEADER VIRAL PROTEIN 02-APR-08 2ZL7 TITLE ATOMIC RESOLUTION STRUCTURAL CHARACTERIZATION OF RECOGNITION OF HISTO- TITLE 2 BLOOD GROUP ANTIGENS BY NORWALK VIRUS CAVEAT 2ZL7 NGA C 3 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 58 KD CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P-DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 STRAIN: G.I; SOURCE 4 GENE: ORF2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHISMAL-C2ET KEYWDS NOROVIRUS, NORWALK VIRUS, HBGA, HISTO-BLOOD GROUP ANTIGEN, KEYWDS 2 CARBOHYDRATE, VP1, P-DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.CHOI,A.M.HUSTON,M.K.ESTES,B.V.V.PRASAD REVDAT 4 01-NOV-23 2ZL7 1 HETSYN REVDAT 3 29-JUL-20 2ZL7 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 24-FEB-09 2ZL7 1 VERSN REVDAT 1 22-JUL-08 2ZL7 0 JRNL AUTH J.M.CHOI,A.M.HUTSON,M.K.ESTES,B.V.V.PRASAD JRNL TITL ATOMIC RESOLUTION STRUCTURAL CHARACTERIZATION OF RECOGNITION JRNL TITL 2 OF HISTO-BLOOD GROUP ANTIGENS BY NORWALK VIRUS JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 9175 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18599458 JRNL DOI 10.1073/PNAS.0803275105 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 131266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9360 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 482 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 736 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.726 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4512 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2968 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6196 ; 1.421 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7305 ; 0.858 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 8.841 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;34.506 ;24.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;10.380 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5055 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 861 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3187 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2256 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2199 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 557 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.432 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2920 ; 0.788 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1142 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4673 ; 1.329 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 1.725 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1519 ; 2.365 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000028111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.660 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.83 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM ACETATE BUFFER(PH 4.8), REMARK 280 0.2M AMMONIUM NITRATE, 20% PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.77200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.54400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.54400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.77200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 811 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 899 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1032 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 225 REMARK 465 GLN A 226 REMARK 465 LYS A 227 REMARK 465 THR A 228 REMARK 465 ARG A 229 REMARK 465 PRO A 230 REMARK 465 SER A 489A REMARK 465 GLY A 516 REMARK 465 THR A 517 REMARK 465 ALA A 518 REMARK 465 GLU B 225 REMARK 465 GLN B 226 REMARK 465 LYS B 227 REMARK 465 THR B 228 REMARK 465 ARG B 229 REMARK 465 PRO B 230 REMARK 465 GLY B 517 REMARK 465 THR B 518 REMARK 465 ALA B 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 707 O HOH B 1027 1.82 REMARK 500 O HOH B 685 O HOH B 1025 2.03 REMARK 500 O GLY A 396 O HOH A 862 2.03 REMARK 500 O GLY B 396 O HOH B 1036 2.16 REMARK 500 O HOH A 587 O HOH A 818 2.17 REMARK 500 CG1 VAL A 370 O HOH A 690 2.17 REMARK 500 O HOH B 848 O HOH B 1027 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER B 383 N - CA - C ANGL. DEV. = -23.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 261 -74.55 -109.17 REMARK 500 SER A 339 162.36 90.41 REMARK 500 PRO A 428 48.41 -79.59 REMARK 500 ASN A 486 67.27 -101.04 REMARK 500 SER B 339 162.50 85.76 REMARK 500 PHE B 414 69.43 107.38 REMARK 500 PRO B 428 49.46 -78.10 REMARK 500 ALA B 488 50.39 -112.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 382 SER B 383 -117.71 REMARK 500 GLY B 413 PHE B 414 74.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZL5 RELATED DB: PDB REMARK 900 SAME P-DOMAIN REMARK 900 RELATED ID: 2ZL6 RELATED DB: PDB REMARK 900 SAME P-DOMAIN WITH H-TYPE HBGA DBREF 2ZL7 A 225 518 UNP Q83884 Q83884_9CALI 225 519 DBREF 2ZL7 B 225 519 UNP Q83884 Q83884_9CALI 225 519 SEQRES 1 A 295 GLU GLN LYS THR ARG PRO PHE THR LEU PRO ASN LEU PRO SEQRES 2 A 295 LEU SER SER LEU SER ASN SER ARG ALA PRO LEU PRO ILE SEQRES 3 A 295 SER SER MET GLY ILE SER PRO ASP ASN VAL GLN SER VAL SEQRES 4 A 295 GLN PHE GLN ASN GLY ARG CYS THR LEU ASP GLY ARG LEU SEQRES 5 A 295 VAL GLY THR THR PRO VAL SER LEU SER HIS VAL ALA LYS SEQRES 6 A 295 ILE ARG GLY THR SER ASN GLY THR VAL ILE ASN LEU THR SEQRES 7 A 295 GLU LEU ASP GLY THR PRO PHE HIS PRO PHE GLU GLY PRO SEQRES 8 A 295 ALA PRO ILE GLY PHE PRO ASP LEU GLY GLY CYS ASP TRP SEQRES 9 A 295 HIS ILE ASN MET THR GLN PHE GLY HIS SER SER GLN THR SEQRES 10 A 295 GLN TYR ASP VAL ASP THR THR PRO ASP THR PHE VAL PRO SEQRES 11 A 295 HIS LEU GLY SER ILE GLN ALA ASN GLY ILE GLY SER GLY SEQRES 12 A 295 ASN TYR VAL GLY VAL LEU SER TRP ILE SER PRO PRO SER SEQRES 13 A 295 HIS PRO SER GLY SER GLN VAL ASP LEU TRP LYS ILE PRO SEQRES 14 A 295 ASN TYR GLY SER SER ILE THR GLU ALA THR HIS LEU ALA SEQRES 15 A 295 PRO SER VAL TYR PRO PRO GLY PHE GLY GLU VAL LEU VAL SEQRES 16 A 295 PHE PHE MET SER LYS MET PRO GLY PRO GLY ALA TYR ASN SEQRES 17 A 295 LEU PRO CYS LEU LEU PRO GLN GLU TYR ILE SER HIS LEU SEQRES 18 A 295 ALA SER GLU GLN ALA PRO THR VAL GLY GLU ALA ALA LEU SEQRES 19 A 295 LEU HIS TYR VAL ASP PRO ASP THR GLY ARG ASN LEU GLY SEQRES 20 A 295 GLU PHE LYS ALA TYR PRO ASP GLY PHE LEU THR CYS VAL SEQRES 21 A 295 PRO ASN GLY ALA SER SER GLY PRO GLN GLN LEU PRO ILE SEQRES 22 A 295 ASN GLY VAL PHE VAL PHE VAL SER TRP VAL SER ARG PHE SEQRES 23 A 295 TYR GLN LEU LYS PRO VAL GLY THR ALA SEQRES 1 B 295 GLU GLN LYS THR ARG PRO PHE THR LEU PRO ASN LEU PRO SEQRES 2 B 295 LEU SER SER LEU SER ASN SER ARG ALA PRO LEU PRO ILE SEQRES 3 B 295 SER SER MET GLY ILE SER PRO ASP ASN VAL GLN SER VAL SEQRES 4 B 295 GLN PHE GLN ASN GLY ARG CYS THR LEU ASP GLY ARG LEU SEQRES 5 B 295 VAL GLY THR THR PRO VAL SER LEU SER HIS VAL ALA LYS SEQRES 6 B 295 ILE ARG GLY THR SER ASN GLY THR VAL ILE ASN LEU THR SEQRES 7 B 295 GLU LEU ASP GLY THR PRO PHE HIS PRO PHE GLU GLY PRO SEQRES 8 B 295 ALA PRO ILE GLY PHE PRO ASP LEU GLY GLY CYS ASP TRP SEQRES 9 B 295 HIS ILE ASN MET THR GLN PHE GLY HIS SER SER GLN THR SEQRES 10 B 295 GLN TYR ASP VAL ASP THR THR PRO ASP THR PHE VAL PRO SEQRES 11 B 295 HIS LEU GLY SER ILE GLN ALA ASN GLY ILE GLY SER GLY SEQRES 12 B 295 ASN TYR VAL GLY VAL LEU SER TRP ILE SER PRO PRO SER SEQRES 13 B 295 HIS PRO SER GLY SER GLN VAL ASP LEU TRP LYS ILE PRO SEQRES 14 B 295 ASN TYR GLY SER SER ILE THR GLU ALA THR HIS LEU ALA SEQRES 15 B 295 PRO SER VAL TYR PRO PRO GLY PHE GLY GLU VAL LEU VAL SEQRES 16 B 295 PHE PHE MET SER LYS MET PRO GLY PRO GLY ALA TYR ASN SEQRES 17 B 295 LEU PRO CYS LEU LEU PRO GLN GLU TYR ILE SER HIS LEU SEQRES 18 B 295 ALA SER GLU GLN ALA PRO THR VAL GLY GLU ALA ALA LEU SEQRES 19 B 295 LEU HIS TYR VAL ASP PRO ASP THR GLY ARG ASN LEU GLY SEQRES 20 B 295 GLU PHE LYS ALA TYR PRO ASP GLY PHE LEU THR CYS VAL SEQRES 21 B 295 PRO ASN GLY ALA SER SER GLY PRO GLN GLN LEU PRO ILE SEQRES 22 B 295 ASN GLY VAL PHE VAL PHE VAL SER TRP VAL SER ARG PHE SEQRES 23 B 295 TYR GLN LEU LYS PRO VAL GLY THR ALA HET GAL C 1 12 HET FUC C 2 10 HET NGA C 3 14 HET CA A 1 1 HET MG A 519 1 HET ACT A 520 4 HET MG B 520 1 HET ACT B 521 4 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 3 NGA C8 H15 N O6 FORMUL 4 CA CA 2+ FORMUL 5 MG 2(MG 2+) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 9 HOH *736(H2 O) HELIX 1 1 PRO A 237 LEU A 241 5 5 HELIX 2 2 SER A 283 VAL A 287 5 5 HELIX 3 3 HIS A 310 GLY A 314 5 5 HELIX 4 4 VAL A 353 LEU A 356 5 4 HELIX 5 5 PRO A 438 GLN A 449 1 12 HELIX 6 6 GLY A 490 LEU A 494 5 5 HELIX 7 7 PRO B 237 LEU B 241 5 5 HELIX 8 8 SER B 283 VAL B 287 5 5 HELIX 9 9 HIS B 310 GLY B 314 5 5 HELIX 10 10 VAL B 353 LEU B 356 5 4 HELIX 11 11 PRO B 438 GLN B 449 1 12 HELIX 12 12 GLY B 491 LEU B 495 5 5 SHEET 1 A 3 SER A 252 GLY A 254 0 SHEET 2 A 3 VAL A 417 MET A 425 -1 O MET A 422 N SER A 252 SHEET 3 A 3 TYR A 431 CYS A 435 -1 O LEU A 433 N SER A 423 SHEET 1 B 6 SER A 252 GLY A 254 0 SHEET 2 B 6 VAL A 417 MET A 425 -1 O MET A 422 N SER A 252 SHEET 3 B 6 PHE A 480 CYS A 483 -1 O CYS A 483 N VAL A 417 SHEET 4 B 6 ASN A 469 TYR A 476 -1 N TYR A 476 O PHE A 480 SHEET 5 B 6 ALA A 456 VAL A 462 -1 N TYR A 461 O LEU A 470 SHEET 6 B 6 VAL A 499 VAL A 506 -1 O SER A 504 N LEU A 458 SHEET 1 C 6 THR A 341 VAL A 345 0 SHEET 2 C 6 ASP A 327 THR A 333 -1 N TRP A 328 O VAL A 345 SHEET 3 C 6 GLY A 367 SER A 377 -1 O VAL A 372 N ASN A 331 SHEET 4 C 6 LYS A 289 SER A 294 -1 N SER A 294 O GLY A 367 SHEET 5 C 6 VAL A 298 LEU A 301 -1 O ASN A 300 N THR A 293 SHEET 6 C 6 SER A 358 GLN A 360 -1 O ILE A 359 N ILE A 299 SHEET 1 D 3 SER B 252 GLY B 254 0 SHEET 2 D 3 PHE B 420 MET B 425 -1 O MET B 422 N SER B 252 SHEET 3 D 3 TYR B 431 CYS B 435 -1 O LEU B 433 N SER B 423 SHEET 1 E 6 THR B 341 VAL B 345 0 SHEET 2 E 6 ASP B 327 THR B 333 -1 N TRP B 328 O VAL B 345 SHEET 3 E 6 GLY B 367 SER B 377 -1 O VAL B 372 N ASN B 331 SHEET 4 E 6 LYS B 289 SER B 294 -1 N SER B 294 O GLY B 367 SHEET 5 E 6 VAL B 298 LEU B 301 -1 O ASN B 300 N THR B 293 SHEET 6 E 6 SER B 358 GLN B 360 -1 O ILE B 359 N ILE B 299 SHEET 1 F 5 VAL B 417 LEU B 418 0 SHEET 2 F 5 PHE B 480 CYS B 483 -1 O CYS B 483 N VAL B 417 SHEET 3 F 5 ASN B 469 TYR B 476 -1 N TYR B 476 O PHE B 480 SHEET 4 F 5 ALA B 456 VAL B 462 -1 N LEU B 459 O PHE B 473 SHEET 5 F 5 VAL B 500 VAL B 507 -1 O VAL B 500 N VAL B 462 LINK O2 GAL C 1 C1 FUC C 2 1555 1555 1.43 LINK O3 GAL C 1 C1 NGA C 3 1555 1555 1.43 LINK CA CA A 1 O THR A 347 1555 1555 2.72 CISPEP 1 HIS A 381 PRO A 382 0 -9.27 CISPEP 2 HIS B 381 PRO B 382 0 -6.76 CISPEP 3 PHE B 414 GLY B 415 0 -25.94 CRYST1 83.069 83.069 164.316 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012038 0.006950 0.000000 0.00000 SCALE2 0.000000 0.013900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006086 0.00000