HEADER LIGASE 10-APR-08 2ZLZ OBSLTE 11-JAN-12 2ZLZ 4A91 TITLE CRYSTAL STRUCTURE OF THE E. COLI GLUTAMYL-TRNAASP SYNTHETASE COMPLEXED TITLE 2 TO L-GLU AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-Q TRNA(ASP) SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLU-Q-RSS; COMPND 5 EC: 6.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA 2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS TRNA SYNTHETASE, QUEUOSINE, TRNA MODIFICATION, GLUTAMYL-TRNA KEYWDS 2 SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BLAISE,V.OLIERIC,C.SAUTER,B.LORBER,B.ROY,S.KARMAKAR,R.BANERJEE, AUTHOR 2 H.D.BECKER,D.KERN REVDAT 4 11-JAN-12 2ZLZ 1 OBSLTE REVDAT 3 24-FEB-09 2ZLZ 1 VERSN REVDAT 2 09-SEP-08 2ZLZ 1 AUTHOR REVDAT 1 02-SEP-08 2ZLZ 0 JRNL AUTH M.BLAISE,V.OLIERIC,C.SAUTER,B.LORBER,B.ROY,S.KARMAKAR, JRNL AUTH 2 R.BANERJEE,H.D.BECKER,D.KERN JRNL TITL CRYSTAL STRUCTURE OF GLUTAMYL-QUEUOSINE TRNAASP SYNTHETASE JRNL TITL 2 COMPLEXED WITH L-GLUTAMATE: STRUCTURAL ELEMENTS MEDIATING JRNL TITL 3 TRNA-INDEPENDENT ACTIVATION OF GLUTAMATE AND GLUTAMYLATION JRNL TITL 4 OF TRNAASP ANTICODON. JRNL REF J.MOL.BIOL. V. 381 1224 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18602926 JRNL DOI 10.1016/J.JMB.2008.06.053 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1729 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB028139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09500 REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1NZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MG-ACETATE, NA-CACODYLATE, 0.2M REMARK 280 KCL, 10% PEG 8000, 2MM L-GLU, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.51500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.51500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 227 CB CYS A 298 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 234 C HIS A 234 O -0.268 REMARK 500 PRO A 236 CG PRO A 236 CD -0.396 REMARK 500 PRO A 236 CD PRO A 236 N -0.114 REMARK 500 ALA A 237 N ALA A 237 CA -0.240 REMARK 500 ALA A 237 C ALA A 237 O 0.237 REMARK 500 ALA A 237 C LEU A 238 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 236 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 ALA A 237 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 ALA A 237 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 ALA A 237 C - N - CA ANGL. DEV. = -18.4 DEGREES REMARK 500 LEU A 238 C - N - CA ANGL. DEV. = -28.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 230 45.53 -86.45 REMARK 500 LYS A 231 -118.82 -72.46 REMARK 500 HIS A 234 63.94 143.04 REMARK 500 PRO A 236 -159.77 -37.72 REMARK 500 ALA A 296 -160.67 -78.11 REMARK 500 SER A 297 -69.13 -126.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 236 ALA A 237 -138.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 234 25.0 L L OUTSIDE RANGE REMARK 500 ALA A 237 1.6 L L EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 CYS A 103 SG 108.2 REMARK 620 3 TYR A 115 OH 106.1 113.3 REMARK 620 4 CYS A 119 SG 118.5 107.5 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NZJ RELATED DB: PDB DBREF 2ZLZ A 1 298 UNP P27305 GLUQ_ECOLI 1 298 SEQRES 1 A 298 MET THR ASP THR GLN TYR ILE GLY ARG PHE ALA PRO SER SEQRES 2 A 298 PRO SER GLY GLU LEU HIS PHE GLY SER LEU ILE ALA ALA SEQRES 3 A 298 LEU GLY SER TYR LEU GLN ALA ARG ALA ARG GLN GLY ARG SEQRES 4 A 298 TRP LEU VAL ARG ILE GLU ASP ILE ASP PRO PRO ARG GLU SEQRES 5 A 298 VAL PRO GLY ALA ALA GLU THR ILE LEU ARG GLN LEU GLU SEQRES 6 A 298 HIS TYR GLY LEU HIS TRP ASP GLY ASP VAL LEU TRP GLN SEQRES 7 A 298 SER GLN ARG HIS ASP ALA TYR ARG GLU ALA LEU ALA TRP SEQRES 8 A 298 LEU HIS GLU GLN GLY LEU SER TYR TYR CYS THR CYS THR SEQRES 9 A 298 ARG ALA ARG ILE GLN SER ILE GLY GLY ILE TYR ASP GLY SEQRES 10 A 298 HIS CYS ARG VAL LEU HIS HIS GLY PRO ASP ASN ALA ALA SEQRES 11 A 298 VAL ARG ILE ARG GLN GLN HIS PRO VAL THR GLN PHE THR SEQRES 12 A 298 ASP GLN LEU ARG GLY ILE ILE HIS ALA ASP GLU LYS LEU SEQRES 13 A 298 ALA ARG GLU ASP PHE ILE ILE HIS ARG ARG ASP GLY LEU SEQRES 14 A 298 PHE ALA TYR ASN LEU ALA VAL VAL VAL ASP ASP HIS PHE SEQRES 15 A 298 GLN GLY VAL THR GLU ILE VAL ARG GLY ALA ASP LEU ILE SEQRES 16 A 298 GLU PRO THR VAL ARG GLN ILE SER LEU TYR GLN LEU PHE SEQRES 17 A 298 GLY TRP LYS VAL PRO ASP TYR ILE HIS LEU PRO LEU ALA SEQRES 18 A 298 LEU ASN PRO GLN GLY ALA LYS LEU SER LYS GLN ASN HIS SEQRES 19 A 298 ALA PRO ALA LEU PRO LYS GLY ASP PRO ARG PRO VAL LEU SEQRES 20 A 298 ILE ALA ALA LEU GLN PHE LEU GLY GLN GLN ALA GLU ALA SEQRES 21 A 298 HIS TRP GLN ASP PHE SER VAL GLU GLN ILE LEU GLN SER SEQRES 22 A 298 ALA VAL LYS ASN TRP ARG LEU THR ALA VAL PRO GLU SER SEQRES 23 A 298 ALA ILE VAL ASN SER THR PHE SER ASN ALA SER CYS HET ZN A 300 1 HET GLU A 301 10 HETNAM ZN ZINC ION HETNAM GLU GLUTAMIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 GLU C5 H9 N O4 FORMUL 4 HOH *438(H2 O) HELIX 1 1 HIS A 19 ARG A 36 1 18 HELIX 2 2 ASP A 48 GLU A 52 5 5 HELIX 3 3 GLY A 55 TYR A 67 1 13 HELIX 4 4 ARG A 81 GLN A 95 1 15 HELIX 5 5 THR A 104 ILE A 111 1 8 HELIX 6 6 ASP A 153 GLU A 159 1 7 HELIX 7 7 ALA A 171 GLN A 183 1 13 HELIX 8 8 GLY A 191 GLU A 196 5 6 HELIX 9 9 PRO A 197 GLY A 209 1 13 HELIX 10 10 PRO A 243 LEU A 254 1 12 HELIX 11 11 HIS A 261 PHE A 265 5 5 HELIX 12 12 SER A 266 ASN A 277 1 12 HELIX 13 13 ARG A 279 VAL A 283 5 5 HELIX 14 14 ASN A 290 SER A 294 5 5 SHEET 1 A 3 ILE A 7 PHE A 10 0 SHEET 2 A 3 ARG A 39 ILE A 44 1 O ARG A 39 N GLY A 8 SHEET 3 A 3 LEU A 76 TRP A 77 1 O LEU A 76 N ILE A 44 SHEET 1 B 3 SER A 98 CYS A 101 0 SHEET 2 B 3 ALA A 130 ILE A 133 -1 O ALA A 130 N CYS A 101 SHEET 3 B 3 ILE A 162 HIS A 164 -1 O ILE A 163 N VAL A 131 SHEET 1 C 2 GLN A 141 ASP A 144 0 SHEET 2 C 2 GLY A 148 HIS A 151 -1 O ILE A 150 N PHE A 142 SHEET 1 D 2 GLU A 187 ARG A 190 0 SHEET 2 D 2 ASP A 214 HIS A 217 1 O ASP A 214 N ILE A 188 SHEET 1 E 2 LEU A 220 LEU A 222 0 SHEET 2 E 2 SER A 286 ILE A 288 1 O ALA A 287 N LEU A 222 LINK SG CYS A 101 ZN ZN A 300 1555 1555 2.37 LINK SG CYS A 103 ZN ZN A 300 1555 1555 2.38 LINK OH TYR A 115 ZN ZN A 300 1555 1555 2.08 LINK SG CYS A 119 ZN ZN A 300 1555 1555 2.33 SITE 1 AC1 4 CYS A 101 CYS A 103 TYR A 115 CYS A 119 SITE 1 AC2 11 ARG A 9 ALA A 11 SER A 13 TYR A 172 SITE 2 AC2 11 ARG A 190 LEU A 194 HOH A 303 HOH A 561 SITE 3 AC2 11 HOH A 602 HOH A 614 HOH A 657 CRYST1 39.100 115.030 154.400 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006477 0.00000