HEADER HYDROLASE 14-APR-08 2ZM7 TITLE STRUCTURE OF 6-AMINOHEXANOATE-DIMER HYDROLASE, S112A/G181D MUTANT TITLE 2 COMPLEXED WITH 6-AMINOHEXANOATE-DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-AMINOHEXANOATE-DIMER HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NYLON OLIGOMERS-DEGRADING ENZYME EII, NYLON OLIGOMERS- COMPND 5 DEGRADING ENZYME EII'; COMPND 6 EC: 3.5.1.46; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA OF NYLON OLIGOMERS-DEGRADING ENZYME EII COMPND 10 (RESIDUES 1-21) AND NYLON OLIGOMERS-DEGRADING ENZYME EII' (RESIDUES COMPND 11 22-392) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FLAVOBACTERIUM SP.; SOURCE 3 ORGANISM_TAXID: 239; SOURCE 4 STRAIN: K172; SOURCE 5 GENE: NYLB, NYLB'; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKP1500 KEYWDS ALPHA-BETA, HYDROLASE, NYLON DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR T.OHKI,N.SHIBATA,Y.HIGUCHI,Y.KAWASHIMA,M.TAKEO,D.KATO,S.NEGORO REVDAT 7 15-NOV-23 2ZM7 1 LINK ATOM REVDAT 6 01-NOV-23 2ZM7 1 REMARK REVDAT 5 10-NOV-21 2ZM7 1 REMARK SEQADV LINK REVDAT 4 09-AUG-17 2ZM7 1 SOURCE REMARK REVDAT 3 13-JUL-11 2ZM7 1 VERSN REVDAT 2 16-JUN-09 2ZM7 1 JRNL REVDAT 1 07-APR-09 2ZM7 0 JRNL AUTH Y.KAWASHIMA,T.OHKI,N.SHIBATA,Y.HIGUCHI,Y.WAKITANI, JRNL AUTH 2 Y.MATSUURA,Y.NAKATA,M.TAKEO,D.KATO,S.NEGORO JRNL TITL MOLECULAR DESIGN OF A NYLON-6 BYPRODUCT-DEGRADING ENZYME JRNL TITL 2 FROM A CARBOXYLESTERASE WITH A BETA-LACTAMASE FOLD JRNL REF FEBS J. V. 276 2547 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19476493 JRNL DOI 10.1111/J.1742-4658.2009.06978.X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 401604.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 79428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7961 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6812 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 720 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.680 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.630 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.710 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.530 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 60.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000028147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2DCF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M MES, PH 6.50, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.44267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.72133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.72133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.44267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.72133 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 864 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 948 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 949 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 53 REMARK 465 ASN A 54 REMARK 465 ALA A 55 REMARK 465 PRO A 56 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 38 39.95 -146.32 REMARK 500 MET A 111 -136.82 44.88 REMARK 500 LEU A 243 -68.68 -135.17 REMARK 500 ASP A 370 100.58 -162.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WYB RELATED DB: PDB REMARK 900 RELATED ID: 1WYC RELATED DB: PDB REMARK 900 RELATED ID: 2DCF RELATED DB: PDB REMARK 900 RELATED ID: 2E8I RELATED DB: PDB REMARK 900 RELATED ID: 2ZM8 RELATED DB: PDB REMARK 900 RELATED ID: 2ZM9 RELATED DB: PDB REMARK 900 RELATED ID: 2ZMA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO DEPOSITORS, ARG190 AND HIS191 ARE CORRECT AND REMARK 999 SWISSPROT IS INCORRECT AT THESE POSITIONS. DBREF 2ZM7 A 1 21 UNP P07061 NYLB_FLASK 1 21 DBREF 2ZM7 A 22 392 UNP P07062 NYLC_FLASK 22 392 SEQADV 2ZM7 ALA A 112 UNP P07062 SER 112 ENGINEERED MUTATION SEQADV 2ZM7 ASP A 181 UNP P07062 GLY 181 ENGINEERED MUTATION SEQADV 2ZM7 ARG A 190 UNP P07062 ALA 190 SEE REMARK 999 SEQADV 2ZM7 HIS A 191 UNP P07062 THR 191 SEE REMARK 999 SEQRES 1 A 392 MET ASN ALA ARG SER THR GLY GLN HIS PRO ALA ARG TYR SEQRES 2 A 392 PRO GLY ALA ALA ALA GLY GLU PRO THR LEU ASP SER TRP SEQRES 3 A 392 GLN GLU PRO PRO HIS ASN ARG TRP ALA PHE ALA HIS LEU SEQRES 4 A 392 GLY GLU MET VAL PRO SER ALA ALA VAL SER ARG ARG PRO SEQRES 5 A 392 VAL ASN ALA PRO GLY HIS ALA LEU ALA ARG LEU GLY ALA SEQRES 6 A 392 ILE ALA ALA GLN LEU PRO ASP LEU GLU GLN ARG LEU GLU SEQRES 7 A 392 GLN THR TYR THR ASP ALA PHE LEU VAL LEU ARG GLY THR SEQRES 8 A 392 GLU VAL VAL ALA GLU TYR TYR ARG ALA GLY PHE ALA PRO SEQRES 9 A 392 ASP ASP ARG HIS LEU LEU MET ALA VAL SER LYS SER LEU SEQRES 10 A 392 CYS GLY THR VAL VAL GLY ALA LEU VAL ASP GLU GLY ARG SEQRES 11 A 392 ILE ASP PRO ALA GLN PRO VAL THR GLU TYR VAL PRO GLU SEQRES 12 A 392 LEU ALA GLY SER VAL TYR ASP GLY PRO SER VAL LEU GLN SEQRES 13 A 392 VAL LEU ASP MET GLN ILE SER ILE ASP TYR ASN GLU ASP SEQRES 14 A 392 TYR VAL ASP PRO ALA SER GLU VAL GLN THR HIS ASP ARG SEQRES 15 A 392 SER ALA GLY TRP ARG THR ARG ARG HIS GLY ASP PRO ALA SEQRES 16 A 392 ASP THR TYR GLU PHE LEU THR THR LEU ARG GLY ASP GLY SEQRES 17 A 392 SER THR GLY GLU PHE GLN TYR CYS SER ALA ASN THR ASP SEQRES 18 A 392 VAL LEU ALA TRP ILE VAL GLU ARG VAL THR GLY LEU ARG SEQRES 19 A 392 TYR VAL GLU ALA LEU SER THR TYR LEU TRP ALA LYS LEU SEQRES 20 A 392 ASP ALA ASP ARG ASP ALA THR ILE THR VAL ASP THR THR SEQRES 21 A 392 GLY PHE GLY PHE ALA HIS GLY GLY VAL SER CYS THR ALA SEQRES 22 A 392 ARG ASP LEU ALA ARG VAL GLY ARG MET MET LEU ASP GLY SEQRES 23 A 392 GLY VAL ALA PRO GLY GLY ARG VAL VAL SER GLU ASP TRP SEQRES 24 A 392 VAL ARG ARG VAL LEU ALA GLY GLY SER HIS GLU ALA MET SEQRES 25 A 392 THR ASP LYS GLY PHE THR ASN THR PHE PRO ASP GLY SER SEQRES 26 A 392 TYR THR ARG GLN TRP TRP CYS THR GLY ASN GLU ARG GLY SEQRES 27 A 392 ASN VAL SER GLY ILE GLY ILE HIS GLY GLN ASN LEU TRP SEQRES 28 A 392 LEU ASP PRO LEU THR ASP SER VAL ILE VAL LYS LEU SER SEQRES 29 A 392 SER TRP PRO ASP PRO ASP THR GLU HIS TRP HIS ARG LEU SEQRES 30 A 392 GLN ASN GLY ILE LEU LEU ASP VAL SER ARG ALA LEU ASP SEQRES 31 A 392 ALA VAL HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET ACA A 501 9 HET ACA A 502 8 HET MES A 503 12 HET MES A 504 12 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HETNAM SO4 SULFATE ION HETNAM ACA 6-AMINOHEXANOIC ACID HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN ACA AMINOCAPROIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 ACA 2(C6 H13 N O2) FORMUL 8 MES 2(C6 H13 N O4 S) FORMUL 10 GOL 3(C3 H8 O3) FORMUL 13 HOH *441(H2 O) HELIX 1 1 PRO A 30 PHE A 36 1 7 HELIX 2 2 ALA A 37 MET A 42 5 6 HELIX 3 3 LEU A 63 ALA A 67 5 5 HELIX 4 4 ASP A 72 THR A 80 1 9 HELIX 5 5 ALA A 112 GLU A 128 1 17 HELIX 6 6 PRO A 136 TYR A 140 5 5 HELIX 7 7 VAL A 141 ALA A 145 5 5 HELIX 8 8 SER A 153 ASP A 159 1 7 HELIX 9 9 SER A 175 GLY A 185 1 11 HELIX 10 10 ASP A 196 THR A 203 1 8 HELIX 11 11 CYS A 216 GLY A 232 1 17 HELIX 12 12 ARG A 234 LEU A 243 1 10 HELIX 13 13 TRP A 244 LEU A 247 5 4 HELIX 14 14 THR A 272 ASP A 285 1 14 HELIX 15 15 SER A 296 GLY A 306 1 11 HELIX 16 16 ASP A 314 PHE A 321 1 8 HELIX 17 17 PRO A 354 THR A 356 5 3 HELIX 18 18 THR A 371 LEU A 389 1 19 SHEET 1 A 8 LEU A 60 ARG A 62 0 SHEET 2 A 8 GLU A 92 TYR A 98 -1 O GLU A 96 N ARG A 62 SHEET 3 A 8 THR A 82 ARG A 89 -1 N VAL A 87 O ALA A 95 SHEET 4 A 8 SER A 358 SER A 364 -1 O LEU A 363 N ALA A 84 SHEET 5 A 8 GLN A 348 ASP A 353 -1 N TRP A 351 O ILE A 360 SHEET 6 A 8 VAL A 340 GLY A 344 -1 N VAL A 340 O LEU A 352 SHEET 7 A 8 TRP A 330 CYS A 332 -1 N TRP A 331 O SER A 341 SHEET 8 A 8 SER A 325 THR A 327 -1 N SER A 325 O CYS A 332 SHEET 1 B 3 HIS A 108 LEU A 109 0 SHEET 2 B 3 VAL A 269 CYS A 271 -1 O CYS A 271 N HIS A 108 SHEET 3 B 3 THR A 254 ILE A 255 -1 N THR A 254 O SER A 270 SHEET 1 C 2 VAL A 288 ALA A 289 0 SHEET 2 C 2 GLY A 292 ARG A 293 -1 O GLY A 292 N ALA A 289 LINK N ACA A 501 C ACA A 502 1555 1555 1.33 CISPEP 1 GLU A 20 PRO A 21 0 -0.09 CISPEP 2 PRO A 29 PRO A 30 0 0.06 SITE 1 AC1 4 ASP A 127 GLU A 128 LYS A 246 ARG A 293 SITE 1 AC2 3 ARG A 205 HOH A 904 HOH A 909 SITE 1 AC3 5 ARG A 107 ARG A 251 ASP A 252 HOH A 780 SITE 2 AC3 5 HOH A 812 SITE 1 AC4 4 ARG A 274 ARG A 278 HOH A 798 HOH A 941 SITE 1 AC5 10 ALA A 112 TYR A 170 TYR A 215 PHE A 317 SITE 2 AC5 10 TRP A 331 ILE A 343 ILE A 345 HOH A 811 SITE 3 AC5 10 HOH A 875 HOH A 894 SITE 1 AC6 9 MET A 111 ALA A 112 TYR A 170 ASP A 181 SITE 2 AC6 9 TRP A 186 HIS A 266 GLY A 344 ILE A 345 SITE 3 AC6 9 HOH A 846 SITE 1 AC7 12 TYR A 13 PRO A 30 TRP A 34 HIS A 38 SITE 2 AC7 12 ARG A 99 GLY A 101 HIS A 309 GLU A 310 SITE 3 AC7 12 HOH A 576 HOH A 727 HOH A 752 HOH A 886 SITE 1 AC8 5 LEU A 70 PRO A 71 ASP A 72 ARG A 76 SITE 2 AC8 5 HOH A 761 SITE 1 AC9 8 PRO A 29 ASP A 159 ARG A 302 THR A 327 SITE 2 AC9 8 ARG A 328 HOH A 616 HOH A 627 HOH A 730 SITE 1 BC1 8 GLN A 79 GLY A 211 GLU A 310 ALA A 311 SITE 2 BC1 8 TRP A 374 HOH A 545 HOH A 620 HOH A 885 SITE 1 BC2 7 ALA A 37 ASP A 106 ARG A 107 ARG A 251 SITE 2 BC2 7 HOH A 662 HOH A 735 HOH A 767 SITE 1 AD1 5 ASP A 127 GLU A 128 LYS A 246 ARG A 293 SITE 2 AD1 5 VAL A 294 SITE 1 AD2 3 ARG A 205 HOH A 904 HOH A 909 SITE 1 AD3 5 ARG A 107 ARG A 251 ASP A 252 HOH A 780 SITE 2 AD3 5 HOH A 812 SITE 1 AD4 4 ARG A 274 ARG A 278 HOH A 798 HOH A 941 SITE 1 AD5 11 ALA A 112 TYR A 170 TYR A 215 PHE A 317 SITE 2 AD5 11 TRP A 331 ILE A 343 ILE A 345 ACA A 502 SITE 3 AD5 11 HOH A 811 HOH A 875 HOH A 894 SITE 1 AD6 10 MET A 111 ALA A 112 TYR A 170 ASP A 181 SITE 2 AD6 10 TRP A 186 HIS A 266 GLY A 344 ILE A 345 SITE 3 AD6 10 ACA A 501 HOH A 846 SITE 1 AD7 12 TYR A 13 PRO A 30 TRP A 34 HIS A 38 SITE 2 AD7 12 ARG A 99 GLY A 101 HIS A 309 GLU A 310 SITE 3 AD7 12 HOH A 576 HOH A 727 HOH A 752 HOH A 886 SITE 1 AD8 5 LEU A 70 PRO A 71 ASP A 72 ARG A 76 SITE 2 AD8 5 HOH A 761 SITE 1 AD9 8 PRO A 29 ASP A 159 ARG A 302 THR A 327 SITE 2 AD9 8 ARG A 328 HOH A 616 HOH A 627 HOH A 730 SITE 1 AE1 8 GLN A 79 GLY A 211 GLU A 310 ALA A 311 SITE 2 AE1 8 TRP A 374 HOH A 545 HOH A 620 HOH A 885 SITE 1 AE2 7 ALA A 37 ASP A 106 ARG A 107 ARG A 251 SITE 2 AE2 7 HOH A 662 HOH A 735 HOH A 767 CRYST1 96.684 96.684 113.164 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010343 0.005972 0.000000 0.00000 SCALE2 0.000000 0.011943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008837 0.00000