HEADER TRANSFERASE 16-APR-08 2ZMD TITLE CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN T686A MUTANT IN TITLE 2 COMPLEX WITH SP600125 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 510-857, CATALYTIC DOMAIN; COMPND 5 SYNONYM: MONOPOLAR SPINDLE 1, PHOSPHOTYROSINE PICKED THREONINE- COMPND 6 PROTEIN KINASE, PYT; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS KINASE, MPS1, SP600125, T686A, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 3 TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.H.CHU,L.M.G.CHAVAS,K.T.DOUGLAS,P.A.EYERS,L.TABERNERO REVDAT 7 01-NOV-23 2ZMD 1 REMARK REVDAT 6 10-NOV-21 2ZMD 1 REMARK SEQADV REVDAT 5 13-JUL-11 2ZMD 1 VERSN REVDAT 4 24-FEB-09 2ZMD 1 VERSN REVDAT 3 12-AUG-08 2ZMD 1 JRNL REVDAT 2 27-MAY-08 2ZMD 1 JRNL REVDAT 1 13-MAY-08 2ZMD 0 JRNL AUTH M.L.CHU,L.M.CHAVAS,K.T.DOUGLAS,P.A.EYERS,L.TABERNERO JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE MITOTIC JRNL TITL 2 CHECKPOINT KINASE MPS1 IN COMPLEX WITH SP600125. JRNL REF J.BIOL.CHEM. V. 283 21495 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18480048 JRNL DOI 10.1074/JBC.M803026200 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 84.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.78000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : 3.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2191 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1503 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2956 ; 1.023 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3698 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 5.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;39.778 ;25.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;14.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.639 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2342 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 458 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1589 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1071 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1107 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 0.332 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 516 ; 0.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2106 ; 0.373 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 0.354 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 0.537 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 516 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): -44.4735 -23.2215 -13.8241 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: -0.1073 REMARK 3 T33: -0.0559 T12: -0.0781 REMARK 3 T13: -0.0135 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.5702 L22: 0.2012 REMARK 3 L33: 6.9565 L12: 0.3517 REMARK 3 L13: 2.7308 L23: 1.1315 REMARK 3 S TENSOR REMARK 3 S11: -0.4133 S12: -0.2052 S13: 0.6208 REMARK 3 S21: 0.0940 S22: -0.2434 S23: -0.3869 REMARK 3 S31: 0.0729 S32: -0.4919 S33: 0.6567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000028153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79800 REMARK 200 R SYM FOR SHELL (I) : 0.53500 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZMC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG300, HEPES, PH6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.98500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.98500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.58500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.98500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.30000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.58500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -70.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 SER A 474 REMARK 465 SER A 475 REMARK 465 GLY A 476 REMARK 465 LEU A 477 REMARK 465 VAL A 478 REMARK 465 PRO A 479 REMARK 465 ARG A 480 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 465 GLY A 483 REMARK 465 MET A 484 REMARK 465 LYS A 485 REMARK 465 GLU A 486 REMARK 465 THR A 487 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 ALA A 490 REMARK 465 LYS A 491 REMARK 465 PHE A 492 REMARK 465 GLU A 493 REMARK 465 ARG A 494 REMARK 465 GLN A 495 REMARK 465 HIS A 496 REMARK 465 MET A 497 REMARK 465 ASP A 498 REMARK 465 SER A 499 REMARK 465 PRO A 500 REMARK 465 ASP A 501 REMARK 465 LEU A 502 REMARK 465 GLY A 503 REMARK 465 THR A 504 REMARK 465 ASP A 505 REMARK 465 ASP A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 LYS A 509 REMARK 465 ALA A 510 REMARK 465 SER A 511 REMARK 465 SER A 512 REMARK 465 SER A 513 REMARK 465 ALA A 514 REMARK 465 ASN A 515 REMARK 465 GLN A 672 REMARK 465 PRO A 673 REMARK 465 ASP A 674 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 LYS A 710 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 465 MET A 809 REMARK 465 LYS A 810 REMARK 465 TYR A 811 REMARK 465 VAL A 812 REMARK 465 LEU A 813 REMARK 465 GLY A 814 REMARK 465 GLN A 815 REMARK 465 LEU A 816 REMARK 465 VAL A 817 REMARK 465 GLY A 818 REMARK 465 LEU A 819 REMARK 465 ASN A 820 REMARK 465 SER A 821 REMARK 465 PRO A 822 REMARK 465 ASN A 823 REMARK 465 SER A 824 REMARK 465 ILE A 825 REMARK 465 LEU A 826 REMARK 465 LYS A 827 REMARK 465 ALA A 828 REMARK 465 ALA A 829 REMARK 465 LYS A 830 REMARK 465 THR A 831 REMARK 465 LEU A 832 REMARK 465 TYR A 833 REMARK 465 GLU A 834 REMARK 465 HIS A 835 REMARK 465 TYR A 836 REMARK 465 SER A 837 REMARK 465 GLY A 838 REMARK 465 GLY A 839 REMARK 465 GLU A 840 REMARK 465 SER A 841 REMARK 465 HIS A 842 REMARK 465 ASN A 843 REMARK 465 SER A 844 REMARK 465 SER A 845 REMARK 465 SER A 846 REMARK 465 SER A 847 REMARK 465 LYS A 848 REMARK 465 THR A 849 REMARK 465 PHE A 850 REMARK 465 GLU A 851 REMARK 465 LYS A 852 REMARK 465 LYS A 853 REMARK 465 ARG A 854 REMARK 465 GLY A 855 REMARK 465 LYS A 856 REMARK 465 LYS A 857 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 594 -165.04 -117.62 REMARK 500 GLN A 640 0.24 -66.13 REMARK 500 ASP A 647 50.55 -156.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 7PE A 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 537 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZMC RELATED DB: PDB REMARK 900 THE SAME MPS1 PROTEIN IS THE WILD TYPE APO-FORM DBREF 2ZMD A 510 857 UNP P33981 TTK_HUMAN 510 857 SEQADV 2ZMD HIS A 468 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 469 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 470 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 471 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 472 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 473 UNP P33981 EXPRESSION TAG SEQADV 2ZMD SER A 474 UNP P33981 EXPRESSION TAG SEQADV 2ZMD SER A 475 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLY A 476 UNP P33981 EXPRESSION TAG SEQADV 2ZMD LEU A 477 UNP P33981 EXPRESSION TAG SEQADV 2ZMD VAL A 478 UNP P33981 EXPRESSION TAG SEQADV 2ZMD PRO A 479 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ARG A 480 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLY A 481 UNP P33981 EXPRESSION TAG SEQADV 2ZMD SER A 482 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLY A 483 UNP P33981 EXPRESSION TAG SEQADV 2ZMD MET A 484 UNP P33981 EXPRESSION TAG SEQADV 2ZMD LYS A 485 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLU A 486 UNP P33981 EXPRESSION TAG SEQADV 2ZMD THR A 487 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ALA A 488 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ALA A 489 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ALA A 490 UNP P33981 EXPRESSION TAG SEQADV 2ZMD LYS A 491 UNP P33981 EXPRESSION TAG SEQADV 2ZMD PHE A 492 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLU A 493 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ARG A 494 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLN A 495 UNP P33981 EXPRESSION TAG SEQADV 2ZMD HIS A 496 UNP P33981 EXPRESSION TAG SEQADV 2ZMD MET A 497 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 498 UNP P33981 EXPRESSION TAG SEQADV 2ZMD SER A 499 UNP P33981 EXPRESSION TAG SEQADV 2ZMD PRO A 500 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 501 UNP P33981 EXPRESSION TAG SEQADV 2ZMD LEU A 502 UNP P33981 EXPRESSION TAG SEQADV 2ZMD GLY A 503 UNP P33981 EXPRESSION TAG SEQADV 2ZMD THR A 504 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 505 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 506 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ASP A 508 UNP P33981 EXPRESSION TAG SEQADV 2ZMD LYS A 509 UNP P33981 EXPRESSION TAG SEQADV 2ZMD ALA A 686 UNP P33981 THR 686 ENGINEERED MUTATION SEQRES 1 A 390 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 390 GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE GLU SEQRES 3 A 390 ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP ASP SEQRES 4 A 390 ASP ASP LYS ALA SER SER SER ALA ASN GLU CYS ILE SER SEQRES 5 A 390 VAL LYS GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SEQRES 6 A 390 SER GLY GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU SEQRES 7 A 390 LYS LYS GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU SEQRES 8 A 390 GLU ALA ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU SEQRES 9 A 390 ILE ALA TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS SEQRES 10 A 390 ILE ILE ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR SEQRES 11 A 390 ILE TYR MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SEQRES 12 A 390 SER TRP LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU SEQRES 13 A 390 ARG LYS SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS SEQRES 14 A 390 THR ILE HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS SEQRES 15 A 390 PRO ALA ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU SEQRES 16 A 390 ILE ASP PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR SEQRES 17 A 390 THR SER VAL VAL LYS ASP SER GLN VAL GLY ALA VAL ASN SEQRES 18 A 390 TYR MET PRO PRO GLU ALA ILE LYS ASP MET SER SER SER SEQRES 19 A 390 ARG GLU ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SEQRES 20 A 390 SER ASP VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET SEQRES 21 A 390 THR TYR GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN SEQRES 22 A 390 ILE SER LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU SEQRES 23 A 390 ILE GLU PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP SEQRES 24 A 390 VAL LEU LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG SEQRES 25 A 390 ILE SER ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN SEQRES 26 A 390 ILE GLN THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR SEQRES 27 A 390 THR GLU GLU MET LYS TYR VAL LEU GLY GLN LEU VAL GLY SEQRES 28 A 390 LEU ASN SER PRO ASN SER ILE LEU LYS ALA ALA LYS THR SEQRES 29 A 390 LEU TYR GLU HIS TYR SER GLY GLY GLU SER HIS ASN SER SEQRES 30 A 390 SER SER SER LYS THR PHE GLU LYS LYS ARG GLY LYS LYS HET 537 A 900 17 HET 7PE A 1 16 HETNAM 537 2,6-DIHYDROANTHRA/1,9-CD/PYRAZOL-6-ONE HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT FORMUL 2 537 C14 H8 N2 O FORMUL 3 7PE C14 H30 O7 FORMUL 4 HOH *26(H2 O) HELIX 1 1 ASP A 561 GLN A 579 1 19 HELIX 2 2 LEU A 609 LYS A 616 1 8 HELIX 3 3 ASP A 620 GLN A 640 1 21 HELIX 4 4 LYS A 649 ALA A 651 5 3 HELIX 5 5 ALA A 686 MET A 690 5 5 HELIX 6 6 PRO A 691 ASP A 697 1 7 HELIX 7 7 SER A 712 GLY A 730 1 19 HELIX 8 8 ASN A 739 ASP A 749 1 11 HELIX 9 9 GLU A 761 LEU A 772 1 12 HELIX 10 10 SER A 781 ALA A 787 1 7 HELIX 11 11 HIS A 788 ILE A 793 1 6 SHEET 1 A 6 ILE A 518 VAL A 520 0 SHEET 2 A 6 ARG A 523 GLY A 532 -1 O TYR A 525 N ILE A 518 SHEET 3 A 6 SER A 537 LEU A 543 -1 O GLN A 541 N LYS A 529 SHEET 4 A 6 ILE A 549 ASN A 556 -1 O ILE A 552 N PHE A 540 SHEET 5 A 6 TYR A 597 GLU A 603 -1 O MET A 602 N ALA A 551 SHEET 6 A 6 LEU A 588 ILE A 593 -1 N GLU A 592 O TYR A 599 SHEET 1 B 3 ILE A 607 ASP A 608 0 SHEET 2 B 3 PHE A 653 ILE A 655 -1 O ILE A 655 N ILE A 607 SHEET 3 B 3 LEU A 660 LEU A 662 -1 O LYS A 661 N LEU A 654 CISPEP 1 GLU A 516 CYS A 517 0 9.13 CISPEP 2 GLY A 534 GLY A 535 0 10.55 CISPEP 3 GLY A 535 SER A 536 0 -2.35 CISPEP 4 SER A 682 GLN A 683 0 12.00 CISPEP 5 VAL A 684 GLY A 685 0 -2.65 CISPEP 6 ILE A 711 SER A 712 0 0.90 CISPEP 7 GLN A 794 THR A 795 0 -11.09 SITE 1 AC1 8 ILE A 531 ALA A 551 ILE A 586 MET A 602 SITE 2 AC1 8 GLU A 603 CYS A 604 GLY A 605 LEU A 654 SITE 1 AC2 5 SER A 537 LYS A 553 MET A 600 ILE A 663 SITE 2 AC2 5 ASN A 669 CRYST1 70.600 105.170 111.970 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008931 0.00000