HEADER IMMUNE SYSTEM/HYDROLASE 02-MAY-08 2ZNW TITLE CRYSTAL STRUCTURE OF SCFV10 IN COMPLEX WITH HEN EGG LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCFV10; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THIS MOLECULE CONTAINS ANTIBODY LIGHT CHAIN(RESIDUES COMPND 6 1-107), LINKER(RESIDUES 108-122) AND ANTIBODY HEAVY CHAIN(RESIDUES COMPND 7 123-236); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYSOZYME C; COMPND 10 CHAIN: Y, Z; COMPND 11 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4, ALLERGEN COMPND 12 GAL D IV; COMPND 13 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090, 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 12 ORGANISM_COMMON: CHICKEN; SOURCE 13 ORGANISM_TAXID: 9031; SOURCE 14 TISSUE: EGG WHITE KEYWDS SINGLE CHAIN FV, LYSOZYME, ALLERGEN, ANTIMICROBIAL, BACTERIOLYTIC KEYWDS 2 ENZYME, GLYCOSIDASE, HYDROLASE, IMMUNE SYSTEM-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.E.DESANTIS,M.ACCHIONE,M.LI,R.L.WALTER,A.WLODAWER,S.SMITH-GILL REVDAT 4 11-OCT-17 2ZNW 1 REMARK REVDAT 3 28-JUN-17 2ZNW 1 SOURCE REVDAT 2 02-OCT-13 2ZNW 1 JRNL SOURCE VERSN REVDAT 1 27-JAN-09 2ZNW 0 JRNL AUTH M.ACCHIONE,Y.C.LEE,M.E.DESANTIS,C.A.LIPSCHULTZ,A.WLODAWER, JRNL AUTH 2 M.LI,A.SHANMUGANATHAN,R.L.WALTER,S.SMITH-GILL,J.J.BARCHI JRNL TITL SPECIFIC FLUORINE LABELING OF THE HYHEL10 ANTIBODY AFFECTS JRNL TITL 2 ANTIGEN BINDING AND DYNAMICS JRNL REF BIOCHEMISTRY V. 51 6017 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22769726 JRNL DOI 10.1021/BI300455T REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0057 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -2.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5606 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7612 ; 1.393 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 6.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;37.852 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 880 ;18.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4278 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3460 ; 0.677 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5564 ; 1.334 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2146 ; 1.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2048 ; 2.939 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 106 4 REMARK 3 1 B 1 B 106 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 808 ; 0.360 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 808 ; 0.420 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 123 A 236 4 REMARK 3 1 B 123 B 236 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 903 ; 0.500 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 903 ; 0.680 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : Y Z REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 Y 1 Y 129 4 REMARK 3 1 Z 1 Z 129 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 Y (A): 1001 ; 0.280 ; 0.500 REMARK 3 MEDIUM THERMAL 3 Y (A**2): 1001 ; 0.720 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15400 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62100 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.2M NA CITRATE, 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.47400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 74.61400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.61400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.23700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.61400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 74.61400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.71100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.61400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.61400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.23700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 74.61400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.61400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.71100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.47400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 108 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 SER A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 GLY B 108 REMARK 465 GLY B 109 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 SER B 122 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN Z 121 O HOH Z 149 2.00 REMARK 500 N ASP B 1 O HOH B 303 2.11 REMARK 500 NH2 ARG Z 45 O HOH Z 152 2.12 REMARK 500 OG SER Y 72 O HOH Y 155 2.18 REMARK 500 CB ASN Z 44 O HOH Z 130 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO Y 70 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 95.72 -1.58 REMARK 500 HIS A 41 84.58 37.77 REMARK 500 ALA A 51 -47.52 74.19 REMARK 500 SER A 60 -39.97 -33.18 REMARK 500 SER A 67 -179.41 -170.16 REMARK 500 SER A 77 90.33 63.31 REMARK 500 PRO A 136 151.25 -49.91 REMARK 500 SER A 137 -7.92 80.22 REMARK 500 ASN A 165 -15.75 80.13 REMARK 500 LYS A 186 68.32 22.15 REMARK 500 PRO Y 70 -86.09 -31.62 REMARK 500 SER Y 72 142.06 -29.40 REMARK 500 SER Y 85 148.41 -25.50 REMARK 500 SER B 40 115.75 -36.64 REMARK 500 HIS B 41 73.89 25.51 REMARK 500 ALA B 51 -46.82 71.25 REMARK 500 SER B 137 -8.61 71.62 REMARK 500 SER B 150 138.27 161.19 REMARK 500 LYS B 186 77.32 20.21 REMARK 500 SER B 187 11.95 56.75 REMARK 500 PRO Z 70 -68.59 -26.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 151 THR B 152 142.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PG B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PG A 243 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZNX RELATED DB: PDB DBREF 2ZNW A 1 107 PDB 2ZNW 2ZNW 1 107 DBREF 2ZNW A 108 122 PDB 2ZNW 2ZNW 108 122 DBREF 2ZNW A 123 236 PDB 2ZNW 2ZNW 123 236 DBREF 2ZNW Y 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 2ZNW B 1 107 PDB 2ZNW 2ZNW 1 107 DBREF 2ZNW B 108 122 PDB 2ZNW 2ZNW 108 122 DBREF 2ZNW B 123 236 PDB 2ZNW 2ZNW 123 236 DBREF 2ZNW Z 1 129 UNP P00698 LYSC_CHICK 19 147 SEQADV 2ZNW HIS A 237 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS A 238 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS A 239 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS A 240 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS A 241 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS A 242 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 237 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 238 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 239 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 240 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 241 PDB 2ZNW EXPRESSION TAG SEQADV 2ZNW HIS B 242 PDB 2ZNW EXPRESSION TAG SEQRES 1 A 242 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 A 242 THR PRO GLY ASN SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 A 242 GLN SER ILE GLY ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 A 242 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 A 242 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 242 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 242 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 A 242 ASN SER TRP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 242 GLU ILE THR GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 10 A 242 GLY GLY GLY GLY SER ASP ILE GLN LEU GLN GLU SER GLY SEQRES 11 A 242 PRO SER LEU VAL LYS PRO SER GLN THR LEU SER LEU THR SEQRES 12 A 242 CYS SER VAL THR GLY ASP SER ILE THR SER ASP TYR TRP SEQRES 13 A 242 SER TRP ILE ARG LYS PHE PRO GLY ASN ARG LEU GLU TYR SEQRES 14 A 242 MET GLY TYR VAL SER TYR SER GLY SER THR TYR TYR ASN SEQRES 15 A 242 PRO SER LEU LYS SER ARG ILE SER ILE THR ARG ASP THR SEQRES 16 A 242 SER LYS ASN GLN TYR TYR LEU ASP LEU ASN SER VAL THR SEQRES 17 A 242 THR GLU ASP THR ALA THR TYR TYR CYS ALA ASN TRP ASP SEQRES 18 A 242 GLY ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 19 A 242 ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 Y 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 Y 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 Y 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 Y 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 Y 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 Y 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 Y 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 Y 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 Y 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 Y 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 B 242 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 B 242 THR PRO GLY ASN SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 B 242 GLN SER ILE GLY ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 B 242 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 B 242 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 B 242 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 B 242 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 B 242 ASN SER TRP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 242 GLU ILE THR GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 10 B 242 GLY GLY GLY GLY SER ASP ILE GLN LEU GLN GLU SER GLY SEQRES 11 B 242 PRO SER LEU VAL LYS PRO SER GLN THR LEU SER LEU THR SEQRES 12 B 242 CYS SER VAL THR GLY ASP SER ILE THR SER ASP TYR TRP SEQRES 13 B 242 SER TRP ILE ARG LYS PHE PRO GLY ASN ARG LEU GLU TYR SEQRES 14 B 242 MET GLY TYR VAL SER TYR SER GLY SER THR TYR TYR ASN SEQRES 15 B 242 PRO SER LEU LYS SER ARG ILE SER ILE THR ARG ASP THR SEQRES 16 B 242 SER LYS ASN GLN TYR TYR LEU ASP LEU ASN SER VAL THR SEQRES 17 B 242 THR GLU ASP THR ALA THR TYR TYR CYS ALA ASN TRP ASP SEQRES 18 B 242 GLY ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 19 B 242 ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 Z 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 Z 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 Z 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 Z 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 Z 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 Z 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 Z 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 Z 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 Z 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 Z 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET 1PG A 243 17 HET 1PG B 243 17 HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL FORMUL 5 1PG 2(C11 H24 O6) FORMUL 7 HOH *193(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 150 ASP A 154 5 5 HELIX 3 3 PRO A 183 LYS A 186 5 4 HELIX 4 4 THR A 208 THR A 212 5 5 HELIX 5 5 GLY Y 4 HIS Y 15 1 12 HELIX 6 6 ASN Y 19 TYR Y 23 5 5 HELIX 7 7 SER Y 24 ASN Y 37 1 14 HELIX 8 8 PRO Y 79 LEU Y 84 5 6 HELIX 9 9 ILE Y 88 SER Y 100 1 13 HELIX 10 10 ASN Y 103 ALA Y 107 5 5 HELIX 11 11 TRP Y 108 CYS Y 115 1 8 HELIX 12 12 ASP Y 119 ARG Y 125 5 7 HELIX 13 13 GLU B 79 PHE B 83 5 5 HELIX 14 14 PRO B 183 LYS B 186 5 4 HELIX 15 15 THR B 208 THR B 212 5 5 HELIX 16 16 GLY Z 4 HIS Z 15 1 12 HELIX 17 17 ASN Z 19 TYR Z 23 5 5 HELIX 18 18 SER Z 24 ASN Z 37 1 14 HELIX 19 19 PRO Z 79 SER Z 85 5 7 HELIX 20 20 ILE Z 88 SER Z 100 1 13 HELIX 21 21 ASN Z 103 ALA Z 107 5 5 HELIX 22 22 TRP Z 108 CYS Z 115 1 8 HELIX 23 23 ASP Z 119 ARG Z 125 5 7 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O SER A 74 SHEET 1 B 5 THR A 10 VAL A 13 0 SHEET 2 B 5 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 B 5 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 B 5 LEU A 33 GLN A 38 -1 N GLN A 38 O MET A 85 SHEET 5 B 5 ARG A 45 ILE A 48 -1 O LEU A 47 N TRP A 35 SHEET 1 C 4 THR A 10 VAL A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 C 4 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 GLN A 125 SER A 129 0 SHEET 2 D 4 LEU A 140 THR A 147 -1 O THR A 147 N GLN A 125 SHEET 3 D 4 GLN A 199 LEU A 204 -1 O LEU A 202 N LEU A 142 SHEET 4 D 4 ILE A 189 ASP A 194 -1 N THR A 192 O TYR A 201 SHEET 1 E 6 LEU A 133 VAL A 134 0 SHEET 2 E 6 THR A 229 VAL A 233 1 O THR A 232 N VAL A 134 SHEET 3 E 6 ALA A 213 ASN A 219 -1 N TYR A 215 O THR A 229 SHEET 4 E 6 TRP A 156 LYS A 161 -1 N SER A 157 O ALA A 218 SHEET 5 E 6 LEU A 167 VAL A 173 -1 O GLU A 168 N ARG A 160 SHEET 6 E 6 THR A 179 TYR A 181 -1 O TYR A 180 N TYR A 172 SHEET 1 F 3 THR Y 43 ARG Y 45 0 SHEET 2 F 3 THR Y 51 TYR Y 53 -1 O ASP Y 52 N ASN Y 44 SHEET 3 F 3 ILE Y 58 ASN Y 59 -1 O ILE Y 58 N TYR Y 53 SHEET 1 G 4 LEU B 4 SER B 7 0 SHEET 2 G 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 G 4 ASP B 70 ILE B 75 -1 O LEU B 73 N LEU B 21 SHEET 4 G 4 PHE B 62 SER B 67 -1 N SER B 63 O SER B 74 SHEET 1 H 5 THR B 10 SER B 12 0 SHEET 2 H 5 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 H 5 GLY B 84 GLN B 90 -1 N GLY B 84 O LEU B 104 SHEET 4 H 5 LEU B 33 GLN B 38 -1 N TYR B 36 O PHE B 87 SHEET 5 H 5 ARG B 45 ILE B 48 -1 O LEU B 47 N TRP B 35 SHEET 1 I 4 THR B 10 SER B 12 0 SHEET 2 I 4 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 I 4 GLY B 84 GLN B 90 -1 N GLY B 84 O LEU B 104 SHEET 4 I 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 J 4 GLN B 125 SER B 129 0 SHEET 2 J 4 LEU B 140 THR B 147 -1 O THR B 147 N GLN B 125 SHEET 3 J 4 GLN B 199 LEU B 204 -1 O LEU B 204 N LEU B 140 SHEET 4 J 4 ILE B 189 ASP B 194 -1 N THR B 192 O TYR B 201 SHEET 1 K 6 LEU B 133 VAL B 134 0 SHEET 2 K 6 THR B 229 VAL B 233 1 O THR B 232 N VAL B 134 SHEET 3 K 6 ALA B 213 ASN B 219 -1 N TYR B 215 O THR B 229 SHEET 4 K 6 TRP B 156 LYS B 161 -1 N ILE B 159 O TYR B 216 SHEET 5 K 6 LEU B 167 VAL B 173 -1 O GLU B 168 N ARG B 160 SHEET 6 K 6 THR B 179 TYR B 181 -1 O TYR B 180 N TYR B 172 SHEET 1 L 3 THR Z 43 ARG Z 45 0 SHEET 2 L 3 THR Z 51 TYR Z 53 -1 O ASP Z 52 N ASN Z 44 SHEET 3 L 3 ILE Z 58 ASN Z 59 -1 O ILE Z 58 N TYR Z 53 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.13 SSBOND 2 CYS A 144 CYS A 217 1555 1555 2.13 SSBOND 3 CYS Y 6 CYS Y 127 1555 1555 2.08 SSBOND 4 CYS Y 30 CYS Y 115 1555 1555 2.06 SSBOND 5 CYS Y 64 CYS Y 80 1555 1555 2.07 SSBOND 6 CYS Y 76 CYS Y 94 1555 1555 2.09 SSBOND 7 CYS B 23 CYS B 88 1555 1555 2.12 SSBOND 8 CYS B 144 CYS B 217 1555 1555 2.11 SSBOND 9 CYS Z 6 CYS Z 127 1555 1555 2.08 SSBOND 10 CYS Z 30 CYS Z 115 1555 1555 2.09 SSBOND 11 CYS Z 64 CYS Z 80 1555 1555 2.07 SSBOND 12 CYS Z 76 CYS Z 94 1555 1555 2.07 CISPEP 1 SER A 7 PRO A 8 0 -0.87 CISPEP 2 TRP A 94 PRO A 95 0 1.04 CISPEP 3 SER B 7 PRO B 8 0 -4.58 CISPEP 4 TRP B 94 PRO B 95 0 6.34 CISPEP 5 ILE B 106 THR B 107 0 -18.99 CISPEP 6 SER B 150 ILE B 151 0 -7.66 SITE 1 AC1 8 HIS B 34 TYR B 36 LYS B 49 GLN B 89 SITE 2 AC1 8 SER B 91 TRP B 220 ASP B 221 ASN Z 93 SITE 1 AC2 9 HIS A 34 TYR A 36 LYS A 49 GLN A 89 SITE 2 AC2 9 SER A 91 TRP A 220 ASP A 221 CYS Y 76 SITE 3 AC2 9 ASN Y 93 CRYST1 149.228 149.228 80.948 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012354 0.00000