data_2ZO2 # _entry.id 2ZO2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZO2 pdb_00002zo2 10.2210/pdb2zo2/pdb NDB PD1135 ? ? RCSB RCSB028210 ? ? WWPDB D_1000028210 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ZO0 'SRA-DNA specific complex 1' unspecified PDB 2ZO1 'SRA-DNA specific complex 2' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZO2 _pdbx_database_status.recvd_initial_deposition_date 2008-05-05 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hashimoto, H.' 1 'Horton, J.R.' 2 'Cheng, X.' 3 # _citation.id primary _citation.title 'The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix' _citation.journal_abbrev Nature _citation.journal_volume 455 _citation.page_first 826 _citation.page_last 829 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18772888 _citation.pdbx_database_id_DOI 10.1038/nature07280 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hashimoto, H.' 1 ? primary 'Horton, J.R.' 2 ? primary 'Zhang, X.' 3 ? primary 'Bostick, M.' 4 ? primary 'Jacobsen, S.E.' 5 ? primary 'Cheng, X.' 6 ? # _cell.entry_id 2ZO2 _cell.length_a 81.551 _cell.length_b 81.551 _cell.length_c 182.165 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZO2 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase UHRF1' 23915.711 1 6.3.2.- ? 'SRA domain, residues 419-628' ? 2 polymer syn ;DNA (5'-D(*DAP*DAP*DCP*DTP*DGP*DCP*DGP*DCP*DAP*DGP*DTP*DT)-3') ; 3662.404 2 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Ubiquitin-like PHD and RING finger domain-containing protein 1, Ubiquitin-like-containing PHD and RING finger domains protein 1, Nuclear zinc finger protein Np95, Nuclear protein 95 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;HMPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKR TAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSG FLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSRKR ; ;HMPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKR TAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSG FLVWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSRKR ; B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DC)(DT)(DG)(DC)(DG)(DC)(DA)(DG)(DT)(DT)' AACTGCGCAGTT D,E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 PRO n 1 4 ALA n 1 5 ASN n 1 6 HIS n 1 7 PHE n 1 8 GLY n 1 9 PRO n 1 10 ILE n 1 11 PRO n 1 12 GLY n 1 13 VAL n 1 14 PRO n 1 15 VAL n 1 16 GLY n 1 17 THR n 1 18 MET n 1 19 TRP n 1 20 ARG n 1 21 PHE n 1 22 ARG n 1 23 VAL n 1 24 GLN n 1 25 VAL n 1 26 SER n 1 27 GLU n 1 28 SER n 1 29 GLY n 1 30 VAL n 1 31 HIS n 1 32 ARG n 1 33 PRO n 1 34 HIS n 1 35 VAL n 1 36 ALA n 1 37 GLY n 1 38 ILE n 1 39 HIS n 1 40 GLY n 1 41 ARG n 1 42 SER n 1 43 ASN n 1 44 ASP n 1 45 GLY n 1 46 ALA n 1 47 TYR n 1 48 SER n 1 49 LEU n 1 50 VAL n 1 51 LEU n 1 52 ALA n 1 53 GLY n 1 54 GLY n 1 55 TYR n 1 56 GLU n 1 57 ASP n 1 58 ASP n 1 59 VAL n 1 60 ASP n 1 61 ASN n 1 62 GLY n 1 63 ASN n 1 64 TYR n 1 65 PHE n 1 66 THR n 1 67 TYR n 1 68 THR n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 GLY n 1 73 ARG n 1 74 ASP n 1 75 LEU n 1 76 SER n 1 77 GLY n 1 78 ASN n 1 79 LYS n 1 80 ARG n 1 81 THR n 1 82 ALA n 1 83 GLY n 1 84 GLN n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 GLN n 1 89 LYS n 1 90 LEU n 1 91 THR n 1 92 ASN n 1 93 ASN n 1 94 ASN n 1 95 ARG n 1 96 ALA n 1 97 LEU n 1 98 ALA n 1 99 LEU n 1 100 ASN n 1 101 CYS n 1 102 HIS n 1 103 SER n 1 104 PRO n 1 105 ILE n 1 106 ASN n 1 107 GLU n 1 108 LYS n 1 109 GLY n 1 110 ALA n 1 111 GLU n 1 112 ALA n 1 113 GLU n 1 114 ASP n 1 115 TRP n 1 116 ARG n 1 117 GLN n 1 118 GLY n 1 119 LYS n 1 120 PRO n 1 121 VAL n 1 122 ARG n 1 123 VAL n 1 124 VAL n 1 125 ARG n 1 126 ASN n 1 127 MET n 1 128 LYS n 1 129 GLY n 1 130 GLY n 1 131 LYS n 1 132 HIS n 1 133 SER n 1 134 LYS n 1 135 TYR n 1 136 ALA n 1 137 PRO n 1 138 ALA n 1 139 GLU n 1 140 GLY n 1 141 ASN n 1 142 ARG n 1 143 TYR n 1 144 ASP n 1 145 GLY n 1 146 ILE n 1 147 TYR n 1 148 LYS n 1 149 VAL n 1 150 VAL n 1 151 LYS n 1 152 TYR n 1 153 TRP n 1 154 PRO n 1 155 GLU n 1 156 ARG n 1 157 GLY n 1 158 LYS n 1 159 SER n 1 160 GLY n 1 161 PHE n 1 162 LEU n 1 163 VAL n 1 164 TRP n 1 165 ARG n 1 166 TYR n 1 167 LEU n 1 168 LEU n 1 169 ARG n 1 170 ARG n 1 171 ASP n 1 172 ASP n 1 173 THR n 1 174 GLU n 1 175 PRO n 1 176 GLU n 1 177 PRO n 1 178 TRP n 1 179 THR n 1 180 ARG n 1 181 GLU n 1 182 GLY n 1 183 LYS n 1 184 ASP n 1 185 ARG n 1 186 THR n 1 187 ARG n 1 188 GLN n 1 189 LEU n 1 190 GLY n 1 191 LEU n 1 192 THR n 1 193 MET n 1 194 GLN n 1 195 TYR n 1 196 PRO n 1 197 GLU n 1 198 GLY n 1 199 TYR n 1 200 LEU n 1 201 GLU n 1 202 ALA n 1 203 LEU n 1 204 ALA n 1 205 ASN n 1 206 LYS n 1 207 GLU n 1 208 LYS n 1 209 SER n 1 210 ARG n 1 211 LYS n 1 212 ARG n 2 1 DA n 2 2 DA n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DG n 2 11 DT n 2 12 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Np95 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'hexahistidine-SUMO tagged construct' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Gold Cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pXC666 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UHRF1_MOUSE Q8VDF2 1 ;PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTA GQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFL VWRYLLRRDDTEPEPWTREGKDRTRQLGLTMQYPEGYLEALANKEKSRKR ; 419 ? 2 PDB 2ZO2 2ZO2 2 AACTGCGCAGTT 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZO2 B 3 ? 212 ? Q8VDF2 419 ? 628 ? 419 628 2 2 2ZO2 D 1 ? 12 ? 2ZO2 1 ? 12 ? 1 12 3 2 2ZO2 E 1 ? 12 ? 2ZO2 13 ? 24 ? 13 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ZO2 HIS B 1 ? UNP Q8VDF2 ? ? 'expression tag' 417 1 1 2ZO2 MET B 2 ? UNP Q8VDF2 ? ? 'expression tag' 418 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZO2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '20% (v/v) polyethylene glycol 3350 or 10000, 0.2-0.4M NaCl, 0.1M MES(pH 5.8-6.2), VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range 5.8-6.2 # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 3350' ? ? ? 1 2 1 'PEG 10000' ? ? ? 1 3 1 NaCL ? ? ? 1 4 1 MES ? ? ? 1 5 2 'PEG 3350' ? ? ? 1 6 2 'PEG 10000' ? ? ? 1 7 2 NaCL ? ? ? 1 8 2 MES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-03-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97924 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97924 # _reflns.entry_id 2ZO2 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 3.09 _reflns.d_resolution_low 34.67 _reflns.number_all ? _reflns.number_obs 6782 _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.86 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.09 _reflns_shell.d_res_low 3.20 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs 0.392 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 638 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZO2 _refine.ls_number_reflns_obs 6424 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 342044.44 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.67 _refine.ls_d_res_high 3.09 _refine.ls_percent_reflns_obs 90.5 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.291 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.5 _refine.ls_number_reflns_R_free 355 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 53.10 _refine.aniso_B[1][1] 1.95000 _refine.aniso_B[2][2] 1.95000 _refine.aniso_B[3][3] -3.89000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 27.4027 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2ZO0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2ZO2 _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 35.00 _refine_analyze.Luzzati_coordinate_error_free 0.51 _refine_analyze.Luzzati_sigma_a_free 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1519 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2010 _refine_hist.d_res_high 3.09 _refine_hist.d_res_low 34.67 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.90 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.05 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.43 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.55 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.69 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.78 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 3.09 _refine_ls_shell.d_res_low 3.20 _refine_ls_shell.number_reflns_R_work 548 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 84.3 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.053 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 548 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZO2 _struct.title 'Mouse NP95 SRA domain non-specific DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZO2 _struct_keywords.pdbx_keywords LIGASE/DNA _struct_keywords.text ;base flipping, Cell cycle, Developmental protein, DNA damage, DNA repair, DNA-binding, Ligase, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation, Ubl conjugation pathway, Zinc, Zinc-finger, LIGASE-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 21 ? SER A 28 ? PHE B 437 SER B 444 1 ? 8 HELX_P HELX_P2 2 ASN A 92 ? CYS A 101 ? ASN B 508 CYS B 517 1 ? 10 HELX_P HELX_P3 3 ASP A 114 ? GLY A 118 ? ASP B 530 GLY B 534 5 ? 5 HELX_P HELX_P4 4 LYS A 128 ? GLY A 130 ? LYS B 544 GLY B 546 5 ? 3 HELX_P HELX_P5 5 THR A 179 ? GLY A 190 ? THR B 595 GLY B 606 1 ? 12 HELX_P HELX_P6 6 GLY A 198 ? SER A 209 ? GLY B 614 SER B 625 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 12 N3 ? ? D DA 1 E DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 12 O4 ? ? D DA 1 E DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 11 N3 ? ? D DA 2 E DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 11 O4 ? ? D DA 2 E DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? D DC 3 E DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? D DC 3 E DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? D DC 3 E DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? D DT 4 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? D DT 4 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DG 5 O6 ? ? D DG 7 E DG 17 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog11 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? D DG 7 E DC 18 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog12 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 5 N2 ? ? D DC 8 E DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog13 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 4 N3 ? ? D DA 9 E DT 16 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog14 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DA 2 N1 ? ? D DG 10 E DA 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DA 2 N6 ? ? D DG 10 E DA 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog16 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 1 N1 ? ? D DT 12 E DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 1 N6 ? ? D DT 12 E DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 18 ? TRP A 19 ? MET B 434 TRP B 435 A 2 ASN A 141 ? ARG A 156 ? ASN B 557 ARG B 572 A 3 LEU A 162 ? ARG A 170 ? LEU B 578 ARG B 586 A 4 TYR A 64 ? THR A 68 ? TYR B 480 THR B 484 B 1 ILE A 38 ? ARG A 41 ? ILE B 454 ARG B 457 B 2 GLY A 45 ? LEU A 51 ? GLY B 461 LEU B 467 B 3 PRO A 120 ? ASN A 126 ? PRO B 536 ASN B 542 B 4 ASN A 141 ? ARG A 156 ? ASN B 557 ARG B 572 B 5 ALA A 110 ? GLU A 111 ? ALA B 526 GLU B 527 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 19 ? N TRP B 435 O ASN A 141 ? O ASN B 557 A 2 3 N VAL A 150 ? N VAL B 566 O LEU A 167 ? O LEU B 583 A 3 4 O LEU A 168 ? O LEU B 584 N PHE A 65 ? N PHE B 481 B 1 2 N HIS A 39 ? N HIS B 455 O TYR A 47 ? O TYR B 463 B 2 3 N LEU A 49 ? N LEU B 465 O VAL A 124 ? O VAL B 540 B 3 4 N ARG A 125 ? N ARG B 541 O ARG A 142 ? O ARG B 558 B 4 5 O TYR A 152 ? O TYR B 568 N ALA A 110 ? N ALA B 526 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id PO4 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO A 33 ? PRO B 449 . ? 1_555 ? 2 AC1 5 HIS A 34 ? HIS B 450 . ? 1_555 ? 3 AC1 5 VAL A 35 ? VAL B 451 . ? 1_555 ? 4 AC1 5 ALA A 36 ? ALA B 452 . ? 1_555 ? 5 AC1 5 DT B 12 ? DT D 12 . ? 10_554 ? # _database_PDB_matrix.entry_id 2ZO2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZO2 _atom_sites.fract_transf_matrix[1][1] 0.012262 _atom_sites.fract_transf_matrix[1][2] 0.007080 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014159 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005490 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 417 417 HIS HIS B . n A 1 2 MET 2 418 418 MET MET B . n A 1 3 PRO 3 419 419 PRO PRO B . n A 1 4 ALA 4 420 420 ALA ALA B . n A 1 5 ASN 5 421 421 ASN ASN B . n A 1 6 HIS 6 422 422 HIS HIS B . n A 1 7 PHE 7 423 423 PHE PHE B . n A 1 8 GLY 8 424 424 GLY GLY B . n A 1 9 PRO 9 425 425 PRO PRO B . n A 1 10 ILE 10 426 426 ILE ILE B . n A 1 11 PRO 11 427 427 PRO PRO B . n A 1 12 GLY 12 428 428 GLY GLY B . n A 1 13 VAL 13 429 429 VAL VAL B . n A 1 14 PRO 14 430 430 PRO PRO B . n A 1 15 VAL 15 431 431 VAL VAL B . n A 1 16 GLY 16 432 432 GLY GLY B . n A 1 17 THR 17 433 433 THR THR B . n A 1 18 MET 18 434 434 MET MET B . n A 1 19 TRP 19 435 435 TRP TRP B . n A 1 20 ARG 20 436 436 ARG ARG B . n A 1 21 PHE 21 437 437 PHE PHE B . n A 1 22 ARG 22 438 438 ARG ARG B . n A 1 23 VAL 23 439 439 VAL VAL B . n A 1 24 GLN 24 440 440 GLN GLN B . n A 1 25 VAL 25 441 441 VAL VAL B . n A 1 26 SER 26 442 442 SER SER B . n A 1 27 GLU 27 443 443 GLU GLU B . n A 1 28 SER 28 444 444 SER SER B . n A 1 29 GLY 29 445 445 GLY GLY B . n A 1 30 VAL 30 446 446 VAL VAL B . n A 1 31 HIS 31 447 447 HIS HIS B . n A 1 32 ARG 32 448 448 ARG ARG B . n A 1 33 PRO 33 449 449 PRO PRO B . n A 1 34 HIS 34 450 450 HIS HIS B . n A 1 35 VAL 35 451 451 VAL VAL B . n A 1 36 ALA 36 452 452 ALA ALA B . n A 1 37 GLY 37 453 453 GLY GLY B . n A 1 38 ILE 38 454 454 ILE ILE B . n A 1 39 HIS 39 455 455 HIS HIS B . n A 1 40 GLY 40 456 456 GLY GLY B . n A 1 41 ARG 41 457 457 ARG ARG B . n A 1 42 SER 42 458 458 SER SER B . n A 1 43 ASN 43 459 459 ASN ASN B . n A 1 44 ASP 44 460 460 ASP ASP B . n A 1 45 GLY 45 461 461 GLY GLY B . n A 1 46 ALA 46 462 462 ALA ALA B . n A 1 47 TYR 47 463 463 TYR TYR B . n A 1 48 SER 48 464 464 SER SER B . n A 1 49 LEU 49 465 465 LEU LEU B . n A 1 50 VAL 50 466 466 VAL VAL B . n A 1 51 LEU 51 467 467 LEU LEU B . n A 1 52 ALA 52 468 468 ALA ALA B . n A 1 53 GLY 53 469 469 GLY GLY B . n A 1 54 GLY 54 470 470 GLY GLY B . n A 1 55 TYR 55 471 471 TYR TYR B . n A 1 56 GLU 56 472 472 GLU GLU B . n A 1 57 ASP 57 473 473 ASP ASP B . n A 1 58 ASP 58 474 474 ASP ASP B . n A 1 59 VAL 59 475 475 VAL VAL B . n A 1 60 ASP 60 476 476 ASP ASP B . n A 1 61 ASN 61 477 477 ASN ASN B . n A 1 62 GLY 62 478 478 GLY GLY B . n A 1 63 ASN 63 479 479 ASN ASN B . n A 1 64 TYR 64 480 480 TYR TYR B . n A 1 65 PHE 65 481 481 PHE PHE B . n A 1 66 THR 66 482 482 THR THR B . n A 1 67 TYR 67 483 483 TYR TYR B . n A 1 68 THR 68 484 484 THR THR B . n A 1 69 GLY 69 485 485 GLY GLY B . n A 1 70 SER 70 486 486 SER SER B . n A 1 71 GLY 71 487 487 GLY GLY B . n A 1 72 GLY 72 488 488 GLY GLY B . n A 1 73 ARG 73 489 489 ARG ARG B . n A 1 74 ASP 74 490 490 ASP ASP B . n A 1 75 LEU 75 491 ? ? ? B . n A 1 76 SER 76 492 ? ? ? B . n A 1 77 GLY 77 493 ? ? ? B . n A 1 78 ASN 78 494 ? ? ? B . n A 1 79 LYS 79 495 ? ? ? B . n A 1 80 ARG 80 496 ? ? ? B . n A 1 81 THR 81 497 ? ? ? B . n A 1 82 ALA 82 498 ? ? ? B . n A 1 83 GLY 83 499 499 GLY GLY B . n A 1 84 GLN 84 500 500 GLN GLN B . n A 1 85 SER 85 501 501 SER SER B . n A 1 86 SER 86 502 502 SER SER B . n A 1 87 ASP 87 503 503 ASP ASP B . n A 1 88 GLN 88 504 504 GLN GLN B . n A 1 89 LYS 89 505 505 LYS LYS B . n A 1 90 LEU 90 506 506 LEU LEU B . n A 1 91 THR 91 507 507 THR THR B . n A 1 92 ASN 92 508 508 ASN ASN B . n A 1 93 ASN 93 509 509 ASN ASN B . n A 1 94 ASN 94 510 510 ASN ASN B . n A 1 95 ARG 95 511 511 ARG ARG B . n A 1 96 ALA 96 512 512 ALA ALA B . n A 1 97 LEU 97 513 513 LEU LEU B . n A 1 98 ALA 98 514 514 ALA ALA B . n A 1 99 LEU 99 515 515 LEU LEU B . n A 1 100 ASN 100 516 516 ASN ASN B . n A 1 101 CYS 101 517 517 CYS CYS B . n A 1 102 HIS 102 518 518 HIS HIS B . n A 1 103 SER 103 519 519 SER SER B . n A 1 104 PRO 104 520 520 PRO PRO B . n A 1 105 ILE 105 521 521 ILE ILE B . n A 1 106 ASN 106 522 522 ASN ASN B . n A 1 107 GLU 107 523 523 GLU GLU B . n A 1 108 LYS 108 524 524 LYS LYS B . n A 1 109 GLY 109 525 525 GLY GLY B . n A 1 110 ALA 110 526 526 ALA ALA B . n A 1 111 GLU 111 527 527 GLU GLU B . n A 1 112 ALA 112 528 528 ALA ALA B . n A 1 113 GLU 113 529 529 GLU GLU B . n A 1 114 ASP 114 530 530 ASP ASP B . n A 1 115 TRP 115 531 531 TRP TRP B . n A 1 116 ARG 116 532 532 ARG ARG B . n A 1 117 GLN 117 533 533 GLN GLN B . n A 1 118 GLY 118 534 534 GLY GLY B . n A 1 119 LYS 119 535 535 LYS LYS B . n A 1 120 PRO 120 536 536 PRO PRO B . n A 1 121 VAL 121 537 537 VAL VAL B . n A 1 122 ARG 122 538 538 ARG ARG B . n A 1 123 VAL 123 539 539 VAL VAL B . n A 1 124 VAL 124 540 540 VAL VAL B . n A 1 125 ARG 125 541 541 ARG ARG B . n A 1 126 ASN 126 542 542 ASN ASN B . n A 1 127 MET 127 543 543 MET MET B . n A 1 128 LYS 128 544 544 LYS LYS B . n A 1 129 GLY 129 545 545 GLY GLY B . n A 1 130 GLY 130 546 546 GLY GLY B . n A 1 131 LYS 131 547 547 LYS LYS B . n A 1 132 HIS 132 548 548 HIS HIS B . n A 1 133 SER 133 549 549 SER SER B . n A 1 134 LYS 134 550 550 LYS LYS B . n A 1 135 TYR 135 551 551 TYR TYR B . n A 1 136 ALA 136 552 552 ALA ALA B . n A 1 137 PRO 137 553 553 PRO PRO B . n A 1 138 ALA 138 554 554 ALA ALA B . n A 1 139 GLU 139 555 555 GLU GLU B . n A 1 140 GLY 140 556 556 GLY GLY B . n A 1 141 ASN 141 557 557 ASN ASN B . n A 1 142 ARG 142 558 558 ARG ARG B . n A 1 143 TYR 143 559 559 TYR TYR B . n A 1 144 ASP 144 560 560 ASP ASP B . n A 1 145 GLY 145 561 561 GLY GLY B . n A 1 146 ILE 146 562 562 ILE ILE B . n A 1 147 TYR 147 563 563 TYR TYR B . n A 1 148 LYS 148 564 564 LYS LYS B . n A 1 149 VAL 149 565 565 VAL VAL B . n A 1 150 VAL 150 566 566 VAL VAL B . n A 1 151 LYS 151 567 567 LYS LYS B . n A 1 152 TYR 152 568 568 TYR TYR B . n A 1 153 TRP 153 569 569 TRP TRP B . n A 1 154 PRO 154 570 570 PRO PRO B . n A 1 155 GLU 155 571 571 GLU GLU B . n A 1 156 ARG 156 572 572 ARG ARG B . n A 1 157 GLY 157 573 573 GLY GLY B . n A 1 158 LYS 158 574 574 LYS LYS B . n A 1 159 SER 159 575 575 SER SER B . n A 1 160 GLY 160 576 576 GLY GLY B . n A 1 161 PHE 161 577 577 PHE PHE B . n A 1 162 LEU 162 578 578 LEU LEU B . n A 1 163 VAL 163 579 579 VAL VAL B . n A 1 164 TRP 164 580 580 TRP TRP B . n A 1 165 ARG 165 581 581 ARG ARG B . n A 1 166 TYR 166 582 582 TYR TYR B . n A 1 167 LEU 167 583 583 LEU LEU B . n A 1 168 LEU 168 584 584 LEU LEU B . n A 1 169 ARG 169 585 585 ARG ARG B . n A 1 170 ARG 170 586 586 ARG ARG B . n A 1 171 ASP 171 587 587 ASP ASP B . n A 1 172 ASP 172 588 588 ASP ASP B . n A 1 173 THR 173 589 589 THR THR B . n A 1 174 GLU 174 590 590 GLU GLU B . n A 1 175 PRO 175 591 591 PRO PRO B . n A 1 176 GLU 176 592 592 GLU GLU B . n A 1 177 PRO 177 593 593 PRO PRO B . n A 1 178 TRP 178 594 594 TRP TRP B . n A 1 179 THR 179 595 595 THR THR B . n A 1 180 ARG 180 596 596 ARG ARG B . n A 1 181 GLU 181 597 597 GLU GLU B . n A 1 182 GLY 182 598 598 GLY GLY B . n A 1 183 LYS 183 599 599 LYS LYS B . n A 1 184 ASP 184 600 600 ASP ASP B . n A 1 185 ARG 185 601 601 ARG ARG B . n A 1 186 THR 186 602 602 THR THR B . n A 1 187 ARG 187 603 603 ARG ARG B . n A 1 188 GLN 188 604 604 GLN GLN B . n A 1 189 LEU 189 605 605 LEU LEU B . n A 1 190 GLY 190 606 606 GLY GLY B . n A 1 191 LEU 191 607 607 LEU LEU B . n A 1 192 THR 192 608 608 THR THR B . n A 1 193 MET 193 609 609 MET MET B . n A 1 194 GLN 194 610 610 GLN GLN B . n A 1 195 TYR 195 611 611 TYR TYR B . n A 1 196 PRO 196 612 612 PRO PRO B . n A 1 197 GLU 197 613 613 GLU GLU B . n A 1 198 GLY 198 614 614 GLY GLY B . n A 1 199 TYR 199 615 615 TYR TYR B . n A 1 200 LEU 200 616 616 LEU LEU B . n A 1 201 GLU 201 617 617 GLU GLU B . n A 1 202 ALA 202 618 618 ALA ALA B . n A 1 203 LEU 203 619 619 LEU LEU B . n A 1 204 ALA 204 620 620 ALA ALA B . n A 1 205 ASN 205 621 621 ASN ASN B . n A 1 206 LYS 206 622 622 LYS LYS B . n A 1 207 GLU 207 623 623 GLU GLU B . n A 1 208 LYS 208 624 624 LYS LYS B . n A 1 209 SER 209 625 625 SER SER B . n A 1 210 ARG 210 626 ? ? ? B . n A 1 211 LYS 211 627 ? ? ? B . n A 1 212 ARG 212 628 ? ? ? B . n B 2 1 DA 1 1 1 DA DA D . n B 2 2 DA 2 2 2 DA DA D . n B 2 3 DC 3 3 3 DC DC D . n B 2 4 DT 4 4 4 DT DT D . n B 2 5 DG 5 5 5 DG DG D . n B 2 6 DC 6 6 6 DC DC D . n B 2 7 DG 7 7 7 DG DG D . n B 2 8 DC 8 8 8 DC DC D . n B 2 9 DA 9 9 9 DA DA D . n B 2 10 DG 10 10 10 DG DG D . n B 2 11 DT 11 11 11 DT DT D . n B 2 12 DT 12 12 12 DT DT D . n C 2 1 DA 1 13 13 DA DA E . n C 2 2 DA 2 14 14 DA DA E . n C 2 3 DC 3 15 15 DC DC E . n C 2 4 DT 4 16 16 DT DT E . n C 2 5 DG 5 17 17 DG DG E . n C 2 6 DC 6 18 18 DC DC E . n C 2 7 DG 7 19 19 DG DG E . n C 2 8 DC 8 20 20 DC DC E . n C 2 9 DA 9 21 21 DA DA E . n C 2 10 DG 10 22 22 DG DG E . n C 2 11 DT 11 23 23 DT DT E . n C 2 12 DT 12 24 24 DT DT E . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id PO4 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id PO4 _pdbx_nonpoly_scheme.auth_mon_id PO4 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA monomeric 1 4 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 1 2 B,C 2 1 B,C 3 1 A,D 4 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1870 ? 1 MORE -18 ? 1 'SSA (A^2)' 14210 ? 2 'ABSA (A^2)' 1120 ? 2 MORE -5 ? 2 'SSA (A^2)' 4550 ? 4 'ABSA (A^2)' 5940 ? 4 MORE -55 ? 4 'SSA (A^2)' 26220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -30.3608333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq.db_align_beg' 4 3 'Structure model' '_struct_ref_seq.db_align_end' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS B 447 ? ? -162.01 89.62 2 1 ASP B 460 ? ? -134.79 -44.59 3 1 ALA B 468 ? ? -108.94 -84.15 4 1 ASP B 474 ? ? -46.56 101.15 5 1 ARG B 489 ? ? 178.96 -148.08 6 1 ASN B 508 ? ? 62.82 -138.24 7 1 ASP B 530 ? ? -151.46 85.87 8 1 ASP B 587 ? ? -170.98 55.44 9 1 PRO B 593 ? ? -59.66 -5.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ARG 448 ? CG ? A ARG 32 CG 2 1 Y 1 B ARG 448 ? CD ? A ARG 32 CD 3 1 Y 1 B ARG 448 ? NE ? A ARG 32 NE 4 1 Y 1 B ARG 448 ? CZ ? A ARG 32 CZ 5 1 Y 1 B ARG 448 ? NH1 ? A ARG 32 NH1 6 1 Y 1 B ARG 448 ? NH2 ? A ARG 32 NH2 7 1 Y 1 B GLU 472 ? CG ? A GLU 56 CG 8 1 Y 1 B GLU 472 ? CD ? A GLU 56 CD 9 1 Y 1 B GLU 472 ? OE1 ? A GLU 56 OE1 10 1 Y 1 B GLU 472 ? OE2 ? A GLU 56 OE2 11 1 Y 1 B ASP 473 ? CG ? A ASP 57 CG 12 1 Y 1 B ASP 473 ? OD1 ? A ASP 57 OD1 13 1 Y 1 B ASP 473 ? OD2 ? A ASP 57 OD2 14 1 Y 1 B ASP 490 ? CG ? A ASP 74 CG 15 1 Y 1 B ASP 490 ? OD1 ? A ASP 74 OD1 16 1 Y 1 B ASP 490 ? OD2 ? A ASP 74 OD2 17 1 Y 1 B SER 501 ? OG ? A SER 85 OG 18 1 Y 1 B SER 502 ? OG ? A SER 86 OG 19 1 Y 1 B LYS 524 ? CG ? A LYS 108 CG 20 1 Y 1 B LYS 524 ? CD ? A LYS 108 CD 21 1 Y 1 B LYS 524 ? CE ? A LYS 108 CE 22 1 Y 1 B LYS 524 ? NZ ? A LYS 108 NZ 23 1 Y 1 B GLU 529 ? CG ? A GLU 113 CG 24 1 Y 1 B GLU 529 ? CD ? A GLU 113 CD 25 1 Y 1 B GLU 529 ? OE1 ? A GLU 113 OE1 26 1 Y 1 B GLU 529 ? OE2 ? A GLU 113 OE2 27 1 Y 1 B LYS 544 ? CG ? A LYS 128 CG 28 1 Y 1 B LYS 544 ? CD ? A LYS 128 CD 29 1 Y 1 B LYS 544 ? CE ? A LYS 128 CE 30 1 Y 1 B LYS 544 ? NZ ? A LYS 128 NZ 31 1 Y 1 B LYS 547 ? CG ? A LYS 131 CG 32 1 Y 1 B LYS 547 ? CD ? A LYS 131 CD 33 1 Y 1 B LYS 547 ? CE ? A LYS 131 CE 34 1 Y 1 B LYS 547 ? NZ ? A LYS 131 NZ 35 1 Y 1 B LYS 550 ? CG ? A LYS 134 CG 36 1 Y 1 B LYS 550 ? CD ? A LYS 134 CD 37 1 Y 1 B LYS 550 ? CE ? A LYS 134 CE 38 1 Y 1 B LYS 550 ? NZ ? A LYS 134 NZ 39 1 Y 1 B GLU 555 ? CG ? A GLU 139 CG 40 1 Y 1 B GLU 555 ? CD ? A GLU 139 CD 41 1 Y 1 B GLU 555 ? OE1 ? A GLU 139 OE1 42 1 Y 1 B GLU 555 ? OE2 ? A GLU 139 OE2 43 1 Y 1 B LEU 578 ? CG ? A LEU 162 CG 44 1 Y 1 B LEU 578 ? CD1 ? A LEU 162 CD1 45 1 Y 1 B LEU 578 ? CD2 ? A LEU 162 CD2 46 1 Y 1 B ARG 596 ? CG ? A ARG 180 CG 47 1 Y 1 B ARG 596 ? CD ? A ARG 180 CD 48 1 Y 1 B ARG 596 ? NE ? A ARG 180 NE 49 1 Y 1 B ARG 596 ? CZ ? A ARG 180 CZ 50 1 Y 1 B ARG 596 ? NH1 ? A ARG 180 NH1 51 1 Y 1 B ARG 596 ? NH2 ? A ARG 180 NH2 52 1 Y 1 B ASP 600 ? CG ? A ASP 184 CG 53 1 Y 1 B ASP 600 ? OD1 ? A ASP 184 OD1 54 1 Y 1 B ASP 600 ? OD2 ? A ASP 184 OD2 55 1 Y 1 B ARG 603 ? CG ? A ARG 187 CG 56 1 Y 1 B ARG 603 ? CD ? A ARG 187 CD 57 1 Y 1 B ARG 603 ? NE ? A ARG 187 NE 58 1 Y 1 B ARG 603 ? CZ ? A ARG 187 CZ 59 1 Y 1 B ARG 603 ? NH1 ? A ARG 187 NH1 60 1 Y 1 B ARG 603 ? NH2 ? A ARG 187 NH2 61 1 Y 1 B GLU 613 ? CG ? A GLU 197 CG 62 1 Y 1 B GLU 613 ? CD ? A GLU 197 CD 63 1 Y 1 B GLU 613 ? OE1 ? A GLU 197 OE1 64 1 Y 1 B GLU 613 ? OE2 ? A GLU 197 OE2 65 1 Y 1 B LYS 622 ? CG ? A LYS 206 CG 66 1 Y 1 B LYS 622 ? CD ? A LYS 206 CD 67 1 Y 1 B LYS 622 ? CE ? A LYS 206 CE 68 1 Y 1 B LYS 622 ? NZ ? A LYS 206 NZ 69 1 Y 1 B GLU 623 ? CG ? A GLU 207 CG 70 1 Y 1 B GLU 623 ? CD ? A GLU 207 CD 71 1 Y 1 B GLU 623 ? OE1 ? A GLU 207 OE1 72 1 Y 1 B GLU 623 ? OE2 ? A GLU 207 OE2 73 1 Y 1 B LYS 624 ? CG ? A LYS 208 CG 74 1 Y 1 B LYS 624 ? CD ? A LYS 208 CD 75 1 Y 1 B LYS 624 ? CE ? A LYS 208 CE 76 1 Y 1 B LYS 624 ? NZ ? A LYS 208 NZ 77 1 Y 1 B SER 625 ? OG ? A SER 209 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B LEU 491 ? A LEU 75 2 1 Y 1 B SER 492 ? A SER 76 3 1 Y 1 B GLY 493 ? A GLY 77 4 1 Y 1 B ASN 494 ? A ASN 78 5 1 Y 1 B LYS 495 ? A LYS 79 6 1 Y 1 B ARG 496 ? A ARG 80 7 1 Y 1 B THR 497 ? A THR 81 8 1 Y 1 B ALA 498 ? A ALA 82 9 1 Y 1 B ARG 626 ? A ARG 210 10 1 Y 1 B LYS 627 ? A LYS 211 11 1 Y 1 B ARG 628 ? A ARG 212 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PO4 P P N N 413 PO4 O1 O N N 414 PO4 O2 O N N 415 PO4 O3 O N N 416 PO4 O4 O N N 417 PRO N N N N 418 PRO CA C N S 419 PRO C C N N 420 PRO O O N N 421 PRO CB C N N 422 PRO CG C N N 423 PRO CD C N N 424 PRO OXT O N N 425 PRO H H N N 426 PRO HA H N N 427 PRO HB2 H N N 428 PRO HB3 H N N 429 PRO HG2 H N N 430 PRO HG3 H N N 431 PRO HD2 H N N 432 PRO HD3 H N N 433 PRO HXT H N N 434 SER N N N N 435 SER CA C N S 436 SER C C N N 437 SER O O N N 438 SER CB C N N 439 SER OG O N N 440 SER OXT O N N 441 SER H H N N 442 SER H2 H N N 443 SER HA H N N 444 SER HB2 H N N 445 SER HB3 H N N 446 SER HG H N N 447 SER HXT H N N 448 THR N N N N 449 THR CA C N S 450 THR C C N N 451 THR O O N N 452 THR CB C N R 453 THR OG1 O N N 454 THR CG2 C N N 455 THR OXT O N N 456 THR H H N N 457 THR H2 H N N 458 THR HA H N N 459 THR HB H N N 460 THR HG1 H N N 461 THR HG21 H N N 462 THR HG22 H N N 463 THR HG23 H N N 464 THR HXT H N N 465 TRP N N N N 466 TRP CA C N S 467 TRP C C N N 468 TRP O O N N 469 TRP CB C N N 470 TRP CG C Y N 471 TRP CD1 C Y N 472 TRP CD2 C Y N 473 TRP NE1 N Y N 474 TRP CE2 C Y N 475 TRP CE3 C Y N 476 TRP CZ2 C Y N 477 TRP CZ3 C Y N 478 TRP CH2 C Y N 479 TRP OXT O N N 480 TRP H H N N 481 TRP H2 H N N 482 TRP HA H N N 483 TRP HB2 H N N 484 TRP HB3 H N N 485 TRP HD1 H N N 486 TRP HE1 H N N 487 TRP HE3 H N N 488 TRP HZ2 H N N 489 TRP HZ3 H N N 490 TRP HH2 H N N 491 TRP HXT H N N 492 TYR N N N N 493 TYR CA C N S 494 TYR C C N N 495 TYR O O N N 496 TYR CB C N N 497 TYR CG C Y N 498 TYR CD1 C Y N 499 TYR CD2 C Y N 500 TYR CE1 C Y N 501 TYR CE2 C Y N 502 TYR CZ C Y N 503 TYR OH O N N 504 TYR OXT O N N 505 TYR H H N N 506 TYR H2 H N N 507 TYR HA H N N 508 TYR HB2 H N N 509 TYR HB3 H N N 510 TYR HD1 H N N 511 TYR HD2 H N N 512 TYR HE1 H N N 513 TYR HE2 H N N 514 TYR HH H N N 515 TYR HXT H N N 516 VAL N N N N 517 VAL CA C N S 518 VAL C C N N 519 VAL O O N N 520 VAL CB C N N 521 VAL CG1 C N N 522 VAL CG2 C N N 523 VAL OXT O N N 524 VAL H H N N 525 VAL H2 H N N 526 VAL HA H N N 527 VAL HB H N N 528 VAL HG11 H N N 529 VAL HG12 H N N 530 VAL HG13 H N N 531 VAL HG21 H N N 532 VAL HG22 H N N 533 VAL HG23 H N N 534 VAL HXT H N N 535 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PO4 P O1 doub N N 407 PO4 P O2 sing N N 408 PO4 P O3 sing N N 409 PO4 P O4 sing N N 410 PRO N CA sing N N 411 PRO N CD sing N N 412 PRO N H sing N N 413 PRO CA C sing N N 414 PRO CA CB sing N N 415 PRO CA HA sing N N 416 PRO C O doub N N 417 PRO C OXT sing N N 418 PRO CB CG sing N N 419 PRO CB HB2 sing N N 420 PRO CB HB3 sing N N 421 PRO CG CD sing N N 422 PRO CG HG2 sing N N 423 PRO CG HG3 sing N N 424 PRO CD HD2 sing N N 425 PRO CD HD3 sing N N 426 PRO OXT HXT sing N N 427 SER N CA sing N N 428 SER N H sing N N 429 SER N H2 sing N N 430 SER CA C sing N N 431 SER CA CB sing N N 432 SER CA HA sing N N 433 SER C O doub N N 434 SER C OXT sing N N 435 SER CB OG sing N N 436 SER CB HB2 sing N N 437 SER CB HB3 sing N N 438 SER OG HG sing N N 439 SER OXT HXT sing N N 440 THR N CA sing N N 441 THR N H sing N N 442 THR N H2 sing N N 443 THR CA C sing N N 444 THR CA CB sing N N 445 THR CA HA sing N N 446 THR C O doub N N 447 THR C OXT sing N N 448 THR CB OG1 sing N N 449 THR CB CG2 sing N N 450 THR CB HB sing N N 451 THR OG1 HG1 sing N N 452 THR CG2 HG21 sing N N 453 THR CG2 HG22 sing N N 454 THR CG2 HG23 sing N N 455 THR OXT HXT sing N N 456 TRP N CA sing N N 457 TRP N H sing N N 458 TRP N H2 sing N N 459 TRP CA C sing N N 460 TRP CA CB sing N N 461 TRP CA HA sing N N 462 TRP C O doub N N 463 TRP C OXT sing N N 464 TRP CB CG sing N N 465 TRP CB HB2 sing N N 466 TRP CB HB3 sing N N 467 TRP CG CD1 doub Y N 468 TRP CG CD2 sing Y N 469 TRP CD1 NE1 sing Y N 470 TRP CD1 HD1 sing N N 471 TRP CD2 CE2 doub Y N 472 TRP CD2 CE3 sing Y N 473 TRP NE1 CE2 sing Y N 474 TRP NE1 HE1 sing N N 475 TRP CE2 CZ2 sing Y N 476 TRP CE3 CZ3 doub Y N 477 TRP CE3 HE3 sing N N 478 TRP CZ2 CH2 doub Y N 479 TRP CZ2 HZ2 sing N N 480 TRP CZ3 CH2 sing Y N 481 TRP CZ3 HZ3 sing N N 482 TRP CH2 HH2 sing N N 483 TRP OXT HXT sing N N 484 TYR N CA sing N N 485 TYR N H sing N N 486 TYR N H2 sing N N 487 TYR CA C sing N N 488 TYR CA CB sing N N 489 TYR CA HA sing N N 490 TYR C O doub N N 491 TYR C OXT sing N N 492 TYR CB CG sing N N 493 TYR CB HB2 sing N N 494 TYR CB HB3 sing N N 495 TYR CG CD1 doub Y N 496 TYR CG CD2 sing Y N 497 TYR CD1 CE1 sing Y N 498 TYR CD1 HD1 sing N N 499 TYR CD2 CE2 doub Y N 500 TYR CD2 HD2 sing N N 501 TYR CE1 CZ doub Y N 502 TYR CE1 HE1 sing N N 503 TYR CE2 CZ sing Y N 504 TYR CE2 HE2 sing N N 505 TYR CZ OH sing N N 506 TYR OH HH sing N N 507 TYR OXT HXT sing N N 508 VAL N CA sing N N 509 VAL N H sing N N 510 VAL N H2 sing N N 511 VAL CA C sing N N 512 VAL CA CB sing N N 513 VAL CA HA sing N N 514 VAL C O doub N N 515 VAL C OXT sing N N 516 VAL CB CG1 sing N N 517 VAL CB CG2 sing N N 518 VAL CB HB sing N N 519 VAL CG1 HG11 sing N N 520 VAL CG1 HG12 sing N N 521 VAL CG1 HG13 sing N N 522 VAL CG2 HG21 sing N N 523 VAL CG2 HG22 sing N N 524 VAL CG2 HG23 sing N N 525 VAL OXT HXT sing N N 526 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ZO2 'b-form double helix' 2ZO2 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 12 1_555 -0.926 -0.544 -0.412 -10.353 -0.577 -5.803 1 D_DA1:DT24_E D 1 ? E 24 ? 20 1 1 B DA 2 1_555 C DT 11 1_555 0.820 -0.160 -0.498 -1.058 -15.368 7.954 2 D_DA2:DT23_E D 2 ? E 23 ? 20 1 1 B DC 3 1_555 C DG 10 1_555 -1.652 0.129 -0.461 -3.924 -17.180 2.265 3 D_DC3:DG22_E D 3 ? E 22 ? 19 1 1 B DT 4 1_555 C DA 9 1_555 -0.095 -0.082 -0.045 -16.449 -12.850 16.391 4 D_DT4:DA21_E D 4 ? E 21 ? 20 1 1 B DG 7 1_555 C DC 6 1_555 -1.283 0.778 -0.527 -38.390 -19.248 16.208 5 D_DG7:DC18_E D 7 ? E 18 ? ? ? 1 B DC 8 1_555 C DG 5 1_555 -1.596 1.027 0.498 -17.100 -18.407 5.525 6 D_DC8:DG17_E D 8 ? E 17 ? ? ? 1 B DA 9 1_555 C DT 4 1_555 0.037 0.171 0.136 -19.426 -25.150 12.646 7 D_DA9:DT16_E D 9 ? E 16 ? ? 1 1 B DG 10 1_555 C DA 2 1_555 0.759 1.306 -1.005 -1.272 -28.652 -24.594 8 D_DG10:DA14_E D 10 ? E 14 ? 8 ? 1 B DT 12 1_555 C DA 1 1_555 -2.050 0.156 -0.019 -31.314 -40.510 -33.168 9 D_DT12:DA13_E D 12 ? E 13 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 12 1_555 B DA 2 1_555 C DT 11 1_555 0.521 -0.193 3.293 4.390 -1.095 45.305 -0.152 -0.281 3.330 -1.418 -5.682 45.518 1 DD_DA1DA2:DT23DT24_EE D 1 ? E 24 ? D 2 ? E 23 ? 1 B DA 2 1_555 C DT 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.919 -0.585 2.862 -3.816 2.429 31.980 -1.433 1.054 2.898 4.380 6.882 32.290 2 DD_DA2DC3:DG22DT23_EE D 2 ? E 23 ? D 3 ? E 22 ? 1 B DC 3 1_555 C DG 10 1_555 B DT 4 1_555 C DA 9 1_555 1.083 0.791 3.638 -2.314 6.741 37.781 0.258 -1.970 3.650 10.299 3.536 38.423 3 DD_DC3DT4:DA21DG22_EE D 3 ? E 22 ? D 4 ? E 21 ? 1 B DG 7 1_555 C DC 6 1_555 B DC 8 1_555 C DG 5 1_555 -2.132 0.628 2.436 -17.518 12.172 23.686 -1.083 0.684 3.222 24.274 34.936 31.774 4 DD_DG7DC8:DG17DC18_EE D 7 ? E 18 ? D 8 ? E 17 ? 1 B DC 8 1_555 C DG 5 1_555 B DA 9 1_555 C DT 4 1_555 0.225 0.786 3.599 -0.357 5.901 37.295 0.362 -0.400 3.674 9.157 0.554 37.744 5 DD_DC8DA9:DT16DG17_EE D 8 ? E 17 ? D 9 ? E 16 ? 1 B DA 9 1_555 C DT 4 1_555 B DG 10 1_555 C DA 2 1_555 -0.748 0.856 4.294 -21.932 7.758 53.951 0.313 -0.829 4.357 8.140 23.012 58.406 6 DD_DA9DG10:DA14DT16_EE D 9 ? E 16 ? D 10 ? E 14 ? 1 B DG 10 1_555 C DA 2 1_555 B DT 12 1_555 C DA 1 1_555 -2.267 -1.452 5.774 3.824 15.811 42.613 -4.207 3.496 4.765 20.869 -5.047 45.477 7 DD_DG10DT12:DA13DA14_EE D 10 ? E 14 ? D 12 ? E 13 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'PHOSPHATE ION' _pdbx_entity_nonpoly.comp_id PO4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ZO0 _pdbx_initial_refinement_model.details 'PDB ENTRY 2ZO0' #