HEADER UNKNOWN FUNCTION 23-MAY-08 2ZOM TITLE CRYSTAL STRUCTURE OF CUTA1 FROM ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CUTA, CHLOROPLAST, PUTATIVE, EXPRESSED; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 65-177; COMPND 5 SYNONYM: CUTA1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST-HIS VECTOR KEYWDS TRIMERIC STRUCTURE, PROTEIN STABILITY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KEZUKA,B.BAGAUTDINOV,S.KATOH,Y.OHTAKE,K.YUTANI,T.NONAKA,E.KATOH REVDAT 3 01-NOV-23 2ZOM 1 REMARK REVDAT 2 13-JUL-11 2ZOM 1 VERSN REVDAT 1 26-MAY-09 2ZOM 0 JRNL AUTH Y.KEZUKA,B.BAGAUTDINOV,S.KATOH,Y.OHTAKE,K.YUTANI,T.NONAKA, JRNL AUTH 2 E.KATOH JRNL TITL CRYSTAL STRUCTURE OF CUTA1 FROM ORYZA SATIVA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SAWANO,H.YAMAMOTO,K.OGASAHARA,S.KIDOKORO,S.KATOH,T.OHNUMA, REMARK 1 AUTH 2 E.KATOH,S.YOKOYAMA,K.YUTANI REMARK 1 TITL THERMODYNAMIC BASIS FOR THE STABILITIES OF THREE CUTA1S FROM REMARK 1 TITL 2 PYROCOCCUS HORIKOSHII,THERMUS THERMOPHILUS, AND ORYZA REMARK 1 TITL 3 SATIVA, WITH UNUSUALLY HIGH DENATURATION TEMPERATURES REMARK 1 REF BIOCHEMISTRY V. 47 721 2008 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 18154307 REMARK 1 DOI 10.1021/BI701761M REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 490 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 703 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.423 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2609 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2446 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3552 ; 2.204 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5713 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 9.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;44.699 ;25.408 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;20.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.239 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2785 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 447 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 612 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2605 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1300 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1660 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2031 ; 1.097 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 657 ; 0.162 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2638 ; 1.380 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1155 ; 1.956 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ; 2.874 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000028230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10138 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 63.628 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : 0.23100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZFH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.09M TRI REMARK 280 -SODIUM CITRATE DIHYDRATE PH5.6, 0.18M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.60700 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.93400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.46700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.60700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.40100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.40100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.60700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.46700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.60700 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.93400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.60700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.93400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.60700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 91.40100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 30.46700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.60700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 30.46700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 91.40100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.60700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.60700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.93400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLU A 112 REMARK 465 SER A 113 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 14 OH TYR C 14 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP C 51 CE3 TRP C 51 CZ3 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 52.29 -116.89 REMARK 500 VAL A 87 76.65 -118.86 REMARK 500 LYS A 96 72.11 -102.98 REMARK 500 ASN A 99 109.42 -34.12 REMARK 500 THR B 7 79.08 -167.67 REMARK 500 PRO B 9 113.09 -28.36 REMARK 500 SER B 29 -31.35 -38.14 REMARK 500 GLU B 33 39.21 -79.23 REMARK 500 LYS B 34 23.12 49.28 REMARK 500 CYS B 38 133.85 171.26 REMARK 500 SER B 70 -60.40 -8.40 REMARK 500 LYS B 96 56.70 -154.29 REMARK 500 ASN B 99 94.37 -64.81 REMARK 500 LYS B 107 -63.76 -28.93 REMARK 500 ASN B 108 12.12 -69.35 REMARK 500 THR C 7 55.73 177.61 REMARK 500 GLU C 33 2.01 -67.51 REMARK 500 CYS C 38 130.83 -179.74 REMARK 500 ASN C 82 58.45 -98.84 REMARK 500 VAL C 87 79.12 -111.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 5 THR A 6 144.82 REMARK 500 THR C 6 THR C 7 -87.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 114 DBREF 2ZOM A 1 113 UNP Q109R6 Q109R6_ORYSJ 65 177 DBREF 2ZOM B 1 113 UNP Q109R6 Q109R6_ORYSJ 65 177 DBREF 2ZOM C 1 113 UNP Q109R6 Q109R6_ORYSJ 65 177 SEQRES 1 A 113 MET GLU SER THR SER THR THR VAL PRO SER ILE VAL VAL SEQRES 2 A 113 TYR VAL THR VAL PRO ASN LYS GLU ALA GLY LYS ARG LEU SEQRES 3 A 113 ALA GLY SER ILE ILE SER GLU LYS LEU ALA ALA CYS VAL SEQRES 4 A 113 ASN ILE VAL PRO GLY ILE GLU SER VAL TYR TRP TRP GLU SEQRES 5 A 113 GLY LYS VAL GLN THR ASP ALA GLU GLU LEU LEU ILE ILE SEQRES 6 A 113 LYS THR ARG GLU SER LEU LEU ASP ALA LEU THR GLU HIS SEQRES 7 A 113 VAL LYS ALA ASN HIS GLU TYR ASP VAL PRO GLU VAL ILE SEQRES 8 A 113 ALA LEU PRO ILE LYS GLY GLY ASN LEU LYS TYR LEU GLU SEQRES 9 A 113 TRP LEU LYS ASN SER THR ARG GLU SER SEQRES 1 B 113 MET GLU SER THR SER THR THR VAL PRO SER ILE VAL VAL SEQRES 2 B 113 TYR VAL THR VAL PRO ASN LYS GLU ALA GLY LYS ARG LEU SEQRES 3 B 113 ALA GLY SER ILE ILE SER GLU LYS LEU ALA ALA CYS VAL SEQRES 4 B 113 ASN ILE VAL PRO GLY ILE GLU SER VAL TYR TRP TRP GLU SEQRES 5 B 113 GLY LYS VAL GLN THR ASP ALA GLU GLU LEU LEU ILE ILE SEQRES 6 B 113 LYS THR ARG GLU SER LEU LEU ASP ALA LEU THR GLU HIS SEQRES 7 B 113 VAL LYS ALA ASN HIS GLU TYR ASP VAL PRO GLU VAL ILE SEQRES 8 B 113 ALA LEU PRO ILE LYS GLY GLY ASN LEU LYS TYR LEU GLU SEQRES 9 B 113 TRP LEU LYS ASN SER THR ARG GLU SER SEQRES 1 C 113 MET GLU SER THR SER THR THR VAL PRO SER ILE VAL VAL SEQRES 2 C 113 TYR VAL THR VAL PRO ASN LYS GLU ALA GLY LYS ARG LEU SEQRES 3 C 113 ALA GLY SER ILE ILE SER GLU LYS LEU ALA ALA CYS VAL SEQRES 4 C 113 ASN ILE VAL PRO GLY ILE GLU SER VAL TYR TRP TRP GLU SEQRES 5 C 113 GLY LYS VAL GLN THR ASP ALA GLU GLU LEU LEU ILE ILE SEQRES 6 C 113 LYS THR ARG GLU SER LEU LEU ASP ALA LEU THR GLU HIS SEQRES 7 C 113 VAL LYS ALA ASN HIS GLU TYR ASP VAL PRO GLU VAL ILE SEQRES 8 C 113 ALA LEU PRO ILE LYS GLY GLY ASN LEU LYS TYR LEU GLU SEQRES 9 C 113 TRP LEU LYS ASN SER THR ARG GLU SER HET GOL A 115 6 HET SO4 A 114 5 HET GOL B 115 6 HET SO4 B 114 5 HET GOL C 115 6 HET SO4 C 114 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *3(H2 O) HELIX 1 1 ASN A 19 GLU A 33 1 15 HELIX 2 2 LEU A 71 ASN A 82 1 12 HELIX 3 3 ASN A 99 THR A 110 1 12 HELIX 4 4 ASN B 19 GLU B 33 1 15 HELIX 5 5 LEU B 71 ASN B 82 1 12 HELIX 6 6 ASN B 99 ASN B 108 1 10 HELIX 7 7 ASN C 19 GLU C 33 1 15 HELIX 8 8 LEU C 71 ASN C 82 1 12 HELIX 9 9 ASN C 99 THR C 110 1 12 SHEET 1 A 8 ILE A 91 PRO A 94 0 SHEET 2 A 8 SER A 10 VAL A 17 -1 N TYR A 14 O ILE A 91 SHEET 3 A 8 LYS A 54 ARG A 68 -1 O ILE A 65 N VAL A 13 SHEET 4 A 8 CYS A 38 TRP A 51 -1 N VAL A 42 O LEU A 62 SHEET 5 A 8 CYS B 38 TRP B 50 -1 O GLU B 46 N ILE A 41 SHEET 6 A 8 VAL B 55 ARG B 68 -1 O ILE B 64 N ASN B 40 SHEET 7 A 8 SER B 10 VAL B 17 -1 N VAL B 15 O LEU B 63 SHEET 8 A 8 ILE B 91 PRO B 94 -1 O LEU B 93 N VAL B 12 SHEET 1 B 8 ILE A 91 PRO A 94 0 SHEET 2 B 8 SER A 10 VAL A 17 -1 N TYR A 14 O ILE A 91 SHEET 3 B 8 LYS A 54 ARG A 68 -1 O ILE A 65 N VAL A 13 SHEET 4 B 8 CYS A 38 TRP A 51 -1 N VAL A 42 O LEU A 62 SHEET 5 B 8 CYS C 38 TRP C 51 -1 O VAL C 39 N VAL A 48 SHEET 6 B 8 LYS C 54 ARG C 68 -1 O GLN C 56 N TYR C 49 SHEET 7 B 8 SER C 10 VAL C 17 -1 N ILE C 11 O THR C 67 SHEET 8 B 8 VAL C 90 ILE C 95 -1 O ILE C 91 N TYR C 14 SITE 1 AC1 4 GLU A 33 HIS A 78 ALA A 81 ASN A 82 SITE 1 AC2 7 THR A 7 VAL A 8 PRO A 9 SER A 10 SITE 2 AC2 7 ILE A 95 GLY A 97 LEU A 103 SITE 1 AC3 4 LYS A 101 TRP B 50 GLU B 52 GLY B 53 SITE 1 AC4 5 PRO B 9 SER B 10 ILE B 95 LYS B 96 SITE 2 AC4 5 GLY B 97 SITE 1 AC5 4 GLU C 33 HIS C 78 ALA C 81 ASN C 82 SITE 1 AC6 5 VAL C 8 PRO C 9 SER C 10 ILE C 95 SITE 2 AC6 5 GLY C 97 CRYST1 127.214 127.214 121.868 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008206 0.00000