HEADER CELL ADHESION 07-JUN-08 2ZOU TITLE CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPONDIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: REELER DOMAIN; COMPND 5 SYNONYM: F-SPONDIN, VASCULAR SMOOTH MUSCLE CELL GROWTH-PROMOTING COMPND 6 FACTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPON1, KIAA0762, VSGP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S CELL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA-SANDWICH, EXTRACELLULAR PROTEIN, CELL ADHESION, EXTRACELLULAR KEYWDS 2 MATRIX, GLYCOPROTEIN, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,T.NOGI,J.TAKAGI REVDAT 8 30-OCT-24 2ZOU 1 REMARK REVDAT 7 01-NOV-23 2ZOU 1 REMARK SEQADV REVDAT 6 21-DEC-16 2ZOU 1 TITLE REVDAT 5 22-FEB-12 2ZOU 1 JRNL REVDAT 4 13-JUL-11 2ZOU 1 VERSN REVDAT 3 24-FEB-09 2ZOU 1 VERSN REVDAT 2 18-NOV-08 2ZOU 1 JRNL TITLE REVDAT 1 14-OCT-08 2ZOU 0 JRNL AUTH M.NAGAE,K.NISHIKAWA,N.YASUI,M.YAMASAKI,T.NOGI,J.TAKAGI JRNL TITL STRUCTURE OF THE F-SPONDIN REELER DOMAIN REVEALS A UNIQUE JRNL TITL 2 BETA-SANDWICH FOLD WITH A DEFORMABLE DISULFIDE-BONDED LOOP JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 1138 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 19020352 JRNL DOI 10.1107/S0907444908028308 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 45897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2342 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3157 ; 1.293 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;25.733 ;22.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;11.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1756 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1037 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1623 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1423 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2265 ; 1.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1032 ; 1.902 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 892 ; 2.888 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2713 -0.3360 22.9662 REMARK 3 T TENSOR REMARK 3 T11: -0.0538 T22: -0.0031 REMARK 3 T33: -0.0287 T12: 0.0007 REMARK 3 T13: 0.0026 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.7892 L22: 0.6542 REMARK 3 L33: 2.1083 L12: -0.2238 REMARK 3 L13: 0.0086 L23: 0.1380 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0019 S13: 0.0029 REMARK 3 S21: 0.0387 S22: -0.0444 S23: -0.0644 REMARK 3 S31: -0.0347 S32: 0.2910 S33: 0.0603 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 184 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4751 -0.4340 8.2007 REMARK 3 T TENSOR REMARK 3 T11: -0.0372 T22: -0.0392 REMARK 3 T33: -0.0329 T12: 0.0143 REMARK 3 T13: 0.0020 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.0454 L22: 1.0084 REMARK 3 L33: 1.5900 L12: 0.0237 REMARK 3 L13: 0.2850 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0622 S13: 0.0099 REMARK 3 S21: -0.0950 S22: -0.0507 S23: 0.0575 REMARK 3 S31: -0.0461 S32: -0.0384 S33: 0.0673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000028238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2ZOT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M BIS-TRIS (PH 5.5), 0.4M AMMONIUM REMARK 280 ACETATE, 25% POLYETHYLENE GLYCOL(PEG) 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.62650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.25900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.62650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.25900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 GLU A 41 REMARK 465 GLY A 42 REMARK 465 LEU A 48 REMARK 465 ARG A 49 REMARK 465 ALA A 50 REMARK 465 GLN A 51 REMARK 465 GLY A 52 REMARK 465 THR A 53 REMARK 465 ARG A 54 REMARK 465 ASP A 185 REMARK 465 SER A 186 REMARK 465 GLY B 38 REMARK 465 SER B 39 REMARK 465 SER B 40 REMARK 465 GLU B 41 REMARK 465 GLY B 42 REMARK 465 ALA B 85 REMARK 465 PRO B 86 REMARK 465 ASP B 185 REMARK 465 SER B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 49 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 44 90.25 63.24 REMARK 500 ARG A 46 -69.44 77.02 REMARK 500 CYS A 128 84.41 -153.32 REMARK 500 PRO A 137 43.47 -82.86 REMARK 500 GLN A 165 -82.35 -120.89 REMARK 500 CYS B 44 -4.42 74.61 REMARK 500 CYS B 128 75.04 -156.58 REMARK 500 GLN B 165 -87.29 -122.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZOT RELATED DB: PDB DBREF 2ZOU A 40 186 UNP Q9HCB6 SPON1_HUMAN 40 186 DBREF 2ZOU B 40 186 UNP Q9HCB6 SPON1_HUMAN 40 186 SEQADV 2ZOU GLY A 38 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOU SER A 39 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOU GLY B 38 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOU SER B 39 UNP Q9HCB6 EXPRESSION TAG SEQRES 1 A 149 GLY SER SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA SEQRES 2 A 149 GLN GLY THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU SEQRES 3 A 149 ARG VAL GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SEQRES 4 A 149 SER TYR ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR SEQRES 5 A 149 PHE ARG GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG SEQRES 6 A 149 GLU GLY ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN SEQRES 7 A 149 ILE ILE ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS SEQRES 8 A 149 PRO VAL ALA VAL THR GLU SER THR PRO ARG ARG ARG THR SEQRES 9 A 149 ARG ILE GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR SEQRES 10 A 149 GLY CYS VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG SEQRES 11 A 149 ILE ILE TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS SEQRES 12 A 149 LEU CYS GLU GLN ASP SER SEQRES 1 B 149 GLY SER SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA SEQRES 2 B 149 GLN GLY THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU SEQRES 3 B 149 ARG VAL GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SEQRES 4 B 149 SER TYR ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR SEQRES 5 B 149 PHE ARG GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG SEQRES 6 B 149 GLU GLY ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN SEQRES 7 B 149 ILE ILE ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS SEQRES 8 B 149 PRO VAL ALA VAL THR GLU SER THR PRO ARG ARG ARG THR SEQRES 9 B 149 ARG ILE GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR SEQRES 10 B 149 GLY CYS VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG SEQRES 11 B 149 ILE ILE TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS SEQRES 12 B 149 LEU CYS GLU GLN ASP SER HET EDO A 2 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO B 1 4 HET EDO B 3 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *220(H2 O) HELIX 1 1 LYS A 106 HIS A 110 5 5 HELIX 2 2 LYS B 106 HIS B 110 5 5 SHEET 1 A 4 PHE A 61 VAL A 65 0 SHEET 2 A 4 SER A 77 ALA A 84 -1 O SER A 83 N SER A 62 SHEET 3 A 4 ARG A 142 ILE A 148 -1 O VAL A 145 N VAL A 80 SHEET 4 A 4 THR A 113 ILE A 116 -1 N THR A 113 O ILE A 148 SHEET 1 B 5 THR A 122 MET A 125 0 SHEET 2 B 5 CYS A 128 GLU A 134 -1 O THR A 133 N GLN A 123 SHEET 3 B 5 GLY A 92 ARG A 99 -1 N LEU A 95 O VAL A 132 SHEET 4 B 5 VAL A 157 VAL A 164 -1 O ILE A 158 N LEU A 98 SHEET 5 B 5 ILE A 168 ILE A 169 -1 O ILE A 169 N ILE A 163 SHEET 1 C 5 THR A 122 MET A 125 0 SHEET 2 C 5 CYS A 128 GLU A 134 -1 O THR A 133 N GLN A 123 SHEET 3 C 5 GLY A 92 ARG A 99 -1 N LEU A 95 O VAL A 132 SHEET 4 C 5 VAL A 157 VAL A 164 -1 O ILE A 158 N LEU A 98 SHEET 5 C 5 THR A 178 LEU A 181 -1 O LEU A 181 N VAL A 157 SHEET 1 D 4 SER B 62 VAL B 65 0 SHEET 2 D 4 SER B 77 PHE B 90 -1 O THR B 81 N ARG B 64 SHEET 3 D 4 ARG B 140 ILE B 148 -1 O ARG B 140 N PHE B 90 SHEET 4 D 4 THR B 113 ILE B 116 -1 N THR B 113 O ILE B 148 SHEET 1 E 5 THR B 122 MET B 125 0 SHEET 2 E 5 CYS B 128 GLU B 134 -1 O THR B 133 N GLN B 123 SHEET 3 E 5 GLY B 92 ARG B 99 -1 N LEU B 95 O VAL B 132 SHEET 4 E 5 VAL B 157 VAL B 164 -1 O ILE B 158 N LEU B 98 SHEET 5 E 5 ILE B 168 ILE B 169 -1 O ILE B 169 N ILE B 163 SHEET 1 F 5 THR B 122 MET B 125 0 SHEET 2 F 5 CYS B 128 GLU B 134 -1 O THR B 133 N GLN B 123 SHEET 3 F 5 GLY B 92 ARG B 99 -1 N LEU B 95 O VAL B 132 SHEET 4 F 5 VAL B 157 VAL B 164 -1 O ILE B 158 N LEU B 98 SHEET 5 F 5 THR B 178 LEU B 181 -1 O LEU B 181 N VAL B 157 SSBOND 1 CYS A 44 CYS A 128 1555 1555 2.03 SSBOND 2 CYS A 156 CYS A 182 1555 1555 2.06 SSBOND 3 CYS B 44 CYS B 128 1555 1555 2.06 SSBOND 4 CYS B 156 CYS B 182 1555 1555 2.07 CISPEP 1 SER A 45 ARG A 46 0 -8.17 CISPEP 2 PRO A 86 PRO A 87 0 0.59 SITE 1 AC1 1 ASP B 173 SITE 1 AC2 8 ASN A 101 ARG A 102 GLU A 103 ASP A 105 SITE 2 AC2 8 LYS A 106 ASP A 109 LYS A 166 HOH A 219 SITE 1 AC3 7 ARG A 55 ARG A 167 GLY B 112 THR B 113 SITE 2 AC3 7 PHE B 114 VAL B 130 HOH B 232 SITE 1 AC4 5 PHE A 93 THR A 94 SER A 162 ILE A 163 SITE 2 AC4 5 HOH A 236 SITE 1 AC5 6 GLU A 60 SER A 62 ARG A 64 SER A 83 SITE 2 AC5 6 ALA A 84 ALA A 85 SITE 1 AC6 8 ALA A 161 ILE A 169 TYR A 170 GLN A 172 SITE 2 AC6 8 LEU A 177 HOH A 192 HOH A 197 HOH A 215 CRYST1 93.253 50.518 63.171 90.00 100.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010724 0.000000 0.001962 0.00000 SCALE2 0.000000 0.019795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016093 0.00000