HEADER HYDROLASE 28-AUG-08 2ZRQ TITLE CRYSTAL STRUCTURE OF S324A-SUBTILISIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 94-422; COMPND 5 EC: 3.4.21.62; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS KODAKARAENSIS; SOURCE 3 ORGANISM_COMMON: THERMOCOCCUS KODAKARAENSIS; SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 GENE: TK1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN, THERMOCOCCUS KODAKARAENSIS, CALCIUM, HYDROLASE, PROTEASE, KEYWDS 2 SECRETED, SERINE PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,Y.TAKEUCHI,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 3 01-NOV-23 2ZRQ 1 REMARK REVDAT 2 10-NOV-21 2ZRQ 1 REMARK SEQADV LINK REVDAT 1 03-MAR-09 2ZRQ 0 JRNL AUTH S.TANAKA,Y.TAKEUCHI,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA JRNL TITL CRYSTAL STRUCTURE OF TK-SUBTILISIN FOLDED WITHOUT JRNL TITL 2 PROPEPTIDE: REQUIREMENT OF PROPEPTIDE FOR ACCELERATION OF JRNL TITL 3 FOLDING JRNL REF FEBS LETT. V. 582 3875 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18951896 JRNL DOI 10.1016/J.FEBSLET.2008.10.025 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2362 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3239 ; 1.525 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;38.658 ;25.532 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;14.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.869 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1828 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1198 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1644 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 29 ; 0.143 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1607 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2527 ; 1.422 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 867 ; 2.460 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 3.600 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000028342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Z2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 5.0, 0.2M REMARK 280 AMMONIUM SULFATE, 20% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.09400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.13850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.46250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.13850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.09400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.46250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 70 REMARK 465 LYS A 71 REMARK 465 PRO A 72 REMARK 465 SER A 73 REMARK 465 TRP A 74 REMARK 465 LEU A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 566 O HOH A 573 1.92 REMARK 500 O HOH A 555 O HOH A 575 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 443 O HOH A 473 3654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 244 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 105 46.36 -76.53 REMARK 500 ASP A 115 -156.48 -157.69 REMARK 500 ALA A 162 17.66 -144.47 REMARK 500 ASN A 166 -155.41 -154.04 REMARK 500 VAL A 170 -161.45 -121.21 REMARK 500 ILE A 219 -72.03 -118.95 REMARK 500 SER A 316 -164.69 -121.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 84 OE1 REMARK 620 2 ASP A 124 OD1 158.3 REMARK 620 3 ASP A 124 OD2 151.2 50.2 REMARK 620 4 LEU A 164 O 82.3 93.6 107.4 REMARK 620 5 ASN A 166 OD1 81.3 77.4 124.3 91.3 REMARK 620 6 ILE A 168 O 87.8 94.0 83.2 169.3 83.1 REMARK 620 7 VAL A 170 O 78.9 122.4 74.9 86.4 160.2 95.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 205 O REMARK 620 2 ASP A 208 OD1 92.8 REMARK 620 3 VAL A 210 O 91.5 88.7 REMARK 620 4 ASP A 226 OD2 86.4 92.2 177.8 REMARK 620 5 HOH A 433 O 87.9 171.1 82.3 96.8 REMARK 620 6 HOH A 492 O 174.6 87.2 93.9 88.1 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 214 OD2 81.9 REMARK 620 3 ASP A 216 OD1 84.2 85.4 REMARK 620 4 ILE A 218 O 92.5 170.6 86.5 REMARK 620 5 ASP A 222 OD1 170.3 92.5 87.4 91.9 REMARK 620 6 ASP A 225 OD2 95.7 96.3 178.2 91.7 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 216 OD2 89.9 REMARK 620 3 ASP A 222 OD1 86.9 74.1 REMARK 620 4 ASP A 222 OD2 118.6 110.9 49.7 REMARK 620 5 ASP A 224 OD2 83.6 168.5 114.9 80.6 REMARK 620 6 HOH A 489 O 93.8 94.0 168.1 137.9 76.9 REMARK 620 7 HOH A 548 O 161.0 93.1 112.0 77.7 90.0 67.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 5 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 GLN A 110 OE1 84.7 REMARK 620 3 ALA A 227 O 154.6 82.2 REMARK 620 4 GLU A 229 OE1 87.4 138.1 87.9 REMARK 620 5 GLU A 229 OE2 74.4 88.4 83.5 50.0 REMARK 620 6 HOH A 444 O 118.5 140.2 84.8 78.4 127.3 REMARK 620 7 HOH A 448 O 80.2 81.0 118.9 137.7 153.2 72.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 6 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 LEU A 373 O 91.2 REMARK 620 3 PRO A 375 O 99.0 97.8 REMARK 620 4 GLY A 377 O 89.6 171.4 90.5 REMARK 620 5 ASP A 379 OD1 158.0 79.4 101.9 96.8 REMARK 620 6 HOH A 416 O 78.6 83.2 177.5 88.6 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 7 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD2 REMARK 620 2 ASP A 121 OD1 78.9 REMARK 620 3 ASP A 314 OD2 110.5 162.0 REMARK 620 4 ASP A 315 OD1 111.2 106.0 85.4 REMARK 620 5 HOH A 467 O 157.3 81.5 85.7 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z2X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MATURE FORM OF TK-SUBTILISIN DBREF 2ZRQ A 70 398 UNP P58502 TKSU_PYRKO 94 422 SEQADV 2ZRQ ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 329 GLY LYS PRO SER TRP LEU GLY GLY GLY SER THR GLN PRO SEQRES 2 A 329 ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL LYS ALA SEQRES 3 A 329 PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SER VAL SEQRES 4 A 329 ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP TYR ASP SEQRES 5 A 329 HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS VAL SER SEQRES 6 A 329 THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG ASP CYS SEQRES 7 A 329 ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE GLY THR SEQRES 8 A 329 ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL GLY VAL SEQRES 9 A 329 ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL LEU ASP SEQRES 10 A 329 ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA ILE GLY SEQRES 11 A 329 ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL ALA ASP SEQRES 12 A 329 LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO ASP ASP SEQRES 13 A 329 ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY GLY PRO SEQRES 14 A 329 ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE GLN ALA SEQRES 15 A 329 TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER GLY ASN SEQRES 16 A 329 GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA TYR PRO SEQRES 17 A 329 GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN ASP ASN SEQRES 18 A 329 ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SER ALA SEQRES 19 A 329 PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP ASP SER SEQRES 20 A 329 TYR GLU THR LEU MET GLY THR ALA MET ALA THR PRO HIS SEQRES 21 A 329 VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA TYR TYR SEQRES 22 A 329 GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR PHE ASP SEQRES 23 A 329 ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU HIS ILE SEQRES 24 A 329 THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP ALA ASP SEQRES 25 A 329 TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA VAL GLN SEQRES 26 A 329 ALA ALA LEU GLY HET CA A 1 1 HET CA A 5 1 HET CA A 7 1 HET CA A 2 1 HET CA A 3 1 HET CA A 4 1 HET CA A 6 1 HETNAM CA CALCIUM ION FORMUL 2 CA 7(CA 2+) FORMUL 9 HOH *188(H2 O) HELIX 1 1 PRO A 87 VAL A 93 1 7 HELIX 2 2 ALA A 95 TRP A 99 5 5 HELIX 3 3 LEU A 125 ALA A 127 5 3 HELIX 4 4 LEU A 136 LYS A 139 5 4 HELIX 5 5 LYS A 143 ALA A 148 1 6 HELIX 6 6 GLY A 152 ALA A 163 1 12 HELIX 7 7 SER A 192 GLY A 206 1 15 HELIX 8 8 ASP A 241 ALA A 254 1 14 HELIX 9 9 GLY A 322 GLY A 346 1 25 HELIX 10 10 THR A 361 ALA A 370 1 10 HELIX 11 11 ARG A 388 GLY A 398 1 11 SHEET 1 A 7 ILE A 129 SER A 134 0 SHEET 2 A 7 GLN A 178 ARG A 183 1 O SER A 181 N TRP A 131 SHEET 3 A 7 GLN A 110 ASP A 115 1 N VAL A 111 O TYR A 180 SHEET 4 A 7 VAL A 230 MET A 233 1 O SER A 232 N ALA A 112 SHEET 5 A 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 A 7 VAL A 279 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 A 7 VAL A 301 PRO A 304 1 O ALA A 303 N ILE A 285 SHEET 1 B 2 ILE A 308 TYR A 312 0 SHEET 2 B 2 SER A 316 LEU A 320 -1 O SER A 316 N TYR A 312 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.06 LINK CA CA A 1 OE1 GLN A 84 1555 1555 2.33 LINK CA CA A 1 OD1 ASP A 124 1555 1555 2.48 LINK CA CA A 1 OD2 ASP A 124 1555 1555 2.65 LINK CA CA A 1 O LEU A 164 1555 1555 2.38 LINK CA CA A 1 OD1 ASN A 166 1555 1555 2.40 LINK CA CA A 1 O ILE A 168 1555 1555 2.38 LINK CA CA A 1 O VAL A 170 1555 1555 2.24 LINK CA CA A 2 O LEU A 205 1555 1555 2.15 LINK CA CA A 2 OD1 ASP A 208 1555 1555 2.25 LINK CA CA A 2 O VAL A 210 1555 1555 2.10 LINK CA CA A 2 OD2 ASP A 226 1555 1555 2.24 LINK CA CA A 2 O HOH A 433 1555 1555 2.36 LINK CA CA A 2 O HOH A 492 1555 1555 2.36 LINK CA CA A 3 OD1 ASP A 212 1555 1555 2.35 LINK CA CA A 3 OD2 ASP A 214 1555 1555 2.36 LINK CA CA A 3 OD1 ASP A 216 1555 1555 2.44 LINK CA CA A 3 O ILE A 218 1555 1555 2.33 LINK CA CA A 3 OD1 ASP A 222 1555 1555 2.16 LINK CA CA A 3 OD2 ASP A 225 1555 1555 2.23 LINK CA CA A 4 OD1 ASP A 214 1555 1555 2.44 LINK CA CA A 4 OD2 ASP A 216 1555 1555 2.33 LINK CA CA A 4 OD1 ASP A 222 1555 1555 2.70 LINK CA CA A 4 OD2 ASP A 222 1555 1555 2.48 LINK CA CA A 4 OD2 ASP A 224 1555 1555 2.54 LINK CA CA A 4 O HOH A 489 1555 1555 2.59 LINK CA CA A 4 O HOH A 548 1555 1555 2.37 LINK CA CA A 5 O VAL A 108 1555 1555 2.36 LINK CA CA A 5 OE1 GLN A 110 1555 1555 2.40 LINK CA CA A 5 O ALA A 227 1555 1555 2.34 LINK CA CA A 5 OE1 GLU A 229 1555 1555 2.48 LINK CA CA A 5 OE2 GLU A 229 1555 1555 2.72 LINK CA CA A 5 O HOH A 444 1555 1555 2.52 LINK CA CA A 5 O HOH A 448 1555 1555 2.53 LINK CA CA A 6 OD1 ASP A 372 1555 1555 2.19 LINK CA CA A 6 O LEU A 373 1555 1555 2.35 LINK CA CA A 6 O PRO A 375 1555 1555 2.24 LINK CA CA A 6 O GLY A 377 1555 1555 2.40 LINK CA CA A 6 OD1 ASP A 379 1555 1555 2.20 LINK CA CA A 6 O HOH A 416 1555 1555 2.49 LINK CA CA A 7 OD2 ASP A 119 1555 1555 2.31 LINK CA CA A 7 OD1 ASP A 121 1555 1555 2.35 LINK CA CA A 7 OD2 ASP A 314 1555 1555 2.36 LINK CA CA A 7 OD1 ASP A 315 1555 1555 2.54 LINK CA CA A 7 O HOH A 467 1555 1555 2.76 CISPEP 1 TYR A 272 PRO A 273 0 2.27 CISPEP 2 PRO A 313 ASP A 314 0 3.70 SITE 1 AC1 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC1 6 ILE A 168 VAL A 170 SITE 1 AC2 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC2 6 HOH A 444 HOH A 448 SITE 1 AC3 6 ASP A 119 ASP A 121 ASP A 314 ASP A 315 SITE 2 AC3 6 HOH A 421 HOH A 467 SITE 1 AC4 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC4 6 HOH A 433 HOH A 492 SITE 1 AC5 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC5 6 ASP A 222 ASP A 225 SITE 1 AC6 6 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 2 AC6 6 HOH A 489 HOH A 548 SITE 1 AC7 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC7 6 ASP A 379 HOH A 416 CRYST1 46.188 60.925 92.277 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010837 0.00000