HEADER OXIDOREDUCTASE 10-OCT-08 2ZTW TITLE STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE IN COMPLEX WITH THE TITLE 2 INHIBITOR AND NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-IPM DEHYDROGENASE, IMDH, 3-IPM-DH; COMPND 5 EC: 1.1.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: LEUB, TTHA1230; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JA221; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHB2 KEYWDS 3-ISOPROPYLMALATE DEHYDROGENASE, IPMDH, DECARBOXYLATING KEYWDS 2 DEHYDROGENASE, LEUCINE BIOSYNTHESIS, AMINO-ACID BIOSYNTHESIS, KEYWDS 3 BRANCHED-CHAIN AMINO ACID BIOSYNTHESIS, CYTOPLASM, MAGNESIUM, KEYWDS 4 MANGANESE, METAL-BINDING, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.NANGO,T.KUMASAKA,T.EGUCHI REVDAT 3 01-NOV-23 2ZTW 1 REMARK REVDAT 2 17-NOV-09 2ZTW 1 JRNL REVDAT 1 13-OCT-09 2ZTW 0 JRNL AUTH E.NANGO,T.YAMAMOTO,T.KUMASAKA,T.EGUCHI JRNL TITL CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE IN JRNL TITL 2 COMPLEX WITH NAD(+) AND A DESIGNED INHIBITOR JRNL REF BIOORG.MED.CHEM. V. 17 7789 2009 JRNL REFN ISSN 0968-0896 JRNL PMID 19833522 JRNL DOI 10.1016/J.BMC.2009.09.025 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.476 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3651 ; 1.653 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;37.116 ;23.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;20.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.989 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2039 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 0.670 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2742 ; 1.321 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 2.232 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 909 ; 3.946 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000028419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 89.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K, PH7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.13933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.27867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.20900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 155.34833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.06967 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.13933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 124.27867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 155.34833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.20900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.06967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -51.75350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 89.63969 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.06967 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 73.95 -118.71 REMARK 500 LEU A 34 107.28 -36.94 REMARK 500 LYS A 76 18.63 -64.94 REMARK 500 TRP A 77 0.82 -154.79 REMARK 500 LYS A 83 -15.71 -48.90 REMARK 500 ASP A 127 76.13 -159.61 REMARK 500 SER A 147 -167.33 -101.24 REMARK 500 ARG A 176 -116.33 -122.11 REMARK 500 VAL A 188 -42.50 -135.25 REMARK 500 SER A 226 49.80 -164.36 REMARK 500 ASP A 231 -86.02 -118.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 400 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 DBREF 2ZTW A 1 345 UNP Q5SIY4 LEU3_THET8 1 345 SEQRES 1 A 345 MET LYS VAL ALA VAL LEU PRO GLY ASP GLY ILE GLY PRO SEQRES 2 A 345 GLU VAL THR GLU ALA ALA LEU LYS VAL LEU ARG ALA LEU SEQRES 3 A 345 ASP GLU ALA GLU GLY LEU GLY LEU ALA TYR GLU VAL PHE SEQRES 4 A 345 PRO PHE GLY GLY ALA ALA ILE ASP ALA PHE GLY GLU PRO SEQRES 5 A 345 PHE PRO GLU PRO THR ARG LYS GLY VAL GLU GLU ALA GLU SEQRES 6 A 345 ALA VAL LEU LEU GLY SER VAL GLY GLY PRO LYS TRP ASP SEQRES 7 A 345 GLY LEU PRO ARG LYS ILE ARG PRO GLU THR GLY LEU LEU SEQRES 8 A 345 SER LEU ARG LYS SER GLN ASP LEU PHE ALA ASN LEU ARG SEQRES 9 A 345 PRO ALA LYS VAL PHE PRO GLY LEU GLU ARG LEU SER PRO SEQRES 10 A 345 LEU LYS GLU GLU ILE ALA ARG GLY VAL ASP VAL LEU ILE SEQRES 11 A 345 VAL ARG GLU LEU THR GLY GLY ILE TYR PHE GLY GLU PRO SEQRES 12 A 345 ARG GLY MET SER GLU ALA GLU ALA TRP ASN THR GLU ARG SEQRES 13 A 345 TYR SER LYS PRO GLU VAL GLU ARG VAL ALA ARG VAL ALA SEQRES 14 A 345 PHE GLU ALA ALA ARG LYS ARG ARG LYS HIS VAL VAL SER SEQRES 15 A 345 VAL ASP LYS ALA ASN VAL LEU GLU VAL GLY GLU PHE TRP SEQRES 16 A 345 ARG LYS THR VAL GLU GLU VAL GLY ARG GLY TYR PRO ASP SEQRES 17 A 345 VAL ALA LEU GLU HIS GLN TYR VAL ASP ALA MET ALA MET SEQRES 18 A 345 HIS LEU VAL ARG SER PRO ALA ARG PHE ASP VAL VAL VAL SEQRES 19 A 345 THR GLY ASN ILE PHE GLY ASP ILE LEU SER ASP LEU ALA SEQRES 20 A 345 SER VAL LEU PRO GLY SER LEU GLY LEU LEU PRO SER ALA SEQRES 21 A 345 SER LEU GLY ARG GLY THR PRO VAL PHE GLU PRO VAL HIS SEQRES 22 A 345 GLY SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA ASN SEQRES 23 A 345 PRO THR ALA ALA ILE LEU SER ALA ALA MET MET LEU GLU SEQRES 24 A 345 HIS ALA PHE GLY LEU VAL GLU LEU ALA ARG LYS VAL GLU SEQRES 25 A 345 ASP ALA VAL ALA LYS ALA LEU LEU GLU THR PRO PRO PRO SEQRES 26 A 345 ASP LEU GLY GLY SER ALA GLY THR GLU ALA PHE THR ALA SEQRES 27 A 345 THR VAL LEU ARG HIS LEU ALA HET NAD A 400 27 HET DEI A 401 8 HET MG A 402 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM DEI (2Z)-2-HYDROXY-3-(METHYLSULFANYL)PROP-2-ENOIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 DEI C4 H6 O3 S FORMUL 4 MG MG 2+ FORMUL 5 HOH *71(H2 O) HELIX 1 1 ILE A 11 GLY A 31 1 21 HELIX 2 2 GLY A 42 GLY A 50 1 9 HELIX 3 3 PRO A 54 ALA A 64 1 11 HELIX 4 4 GLY A 74 ASP A 78 5 5 HELIX 5 5 PRO A 81 ILE A 84 5 4 HELIX 6 6 ARG A 85 GLN A 97 1 13 HELIX 7 7 LEU A 112 SER A 116 5 5 HELIX 8 8 LYS A 119 ARG A 124 1 6 HELIX 9 9 SER A 158 LYS A 175 1 18 HELIX 10 10 LEU A 189 ARG A 204 1 16 HELIX 11 11 VAL A 216 SER A 226 1 11 HELIX 12 12 PRO A 227 PHE A 230 5 4 HELIX 13 13 GLY A 236 VAL A 249 1 14 HELIX 14 14 SER A 253 LEU A 256 5 4 HELIX 15 15 PRO A 287 GLY A 303 1 17 HELIX 16 16 LEU A 304 THR A 322 1 19 HELIX 17 17 PRO A 324 GLY A 328 5 5 HELIX 18 18 GLY A 332 ALA A 345 1 14 SHEET 1 A10 ALA A 35 VAL A 38 0 SHEET 2 A10 LYS A 2 GLY A 8 1 N VAL A 5 O GLU A 37 SHEET 3 A10 ALA A 66 SER A 71 1 O LEU A 68 N LEU A 6 SHEET 4 A10 VAL A 268 PRO A 271 1 O PHE A 269 N LEU A 69 SHEET 5 A10 PRO A 258 GLY A 263 -1 N SER A 261 O VAL A 268 SHEET 6 A10 LEU A 99 LYS A 107 -1 N LEU A 103 O ALA A 260 SHEET 7 A10 ASP A 127 GLU A 133 -1 O ARG A 132 N ASN A 102 SHEET 8 A10 VAL A 232 THR A 235 1 O VAL A 233 N VAL A 131 SHEET 9 A10 HIS A 179 ASP A 184 1 N VAL A 181 O VAL A 234 SHEET 10 A10 ALA A 210 TYR A 215 1 O GLU A 212 N SER A 182 SHEET 1 B 2 GLY A 145 MET A 146 0 SHEET 2 B 2 ALA A 151 TRP A 152 -1 O TRP A 152 N GLY A 145 LINK O GLY A 203 MG MG A 402 1555 1555 2.44 CISPEP 1 GLU A 142 PRO A 143 0 -4.24 SITE 1 AC1 8 HIS A 273 GLY A 274 ALA A 276 ASP A 278 SITE 2 AC1 8 ILE A 279 ALA A 285 ASN A 286 HOH A 471 SITE 1 AC2 4 ASN A 102 SER A 259 GLU A 270 VAL A 272 SITE 1 AC3 4 PHE A 170 GLY A 203 TYR A 206 VAL A 209 CRYST1 103.507 103.507 186.418 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009661 0.005578 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005364 0.00000