HEADER HYDROLASE 31-OCT-08 2ZV3 TITLE CRYSTAL STRUCTURE OF PROJECT MJ0051 FROM METHANOCALDOCOCCUS JANNASCHII TITLE 2 DSM 2661 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-TRNA HYDROLASE; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I; COMPND 4 SYNONYM: PTH; COMPND 5 EC: 3.1.1.29 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: DSM 2661 KEYWDS CYTOPLASM, HYDROLASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR K.SHIMIZU,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 01-NOV-23 2ZV3 1 REMARK REVDAT 1 05-MAY-09 2ZV3 0 JRNL AUTH K.SHIMIZU,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF PROJECT MJ0051 FROM METHANOCALDOCOCCUS JRNL TITL 2 JANNASCHII DSM 2661 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2259034.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2496 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7738 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 430 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.56000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : 3.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 46.95 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000028462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WN2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30W/V(%) PEG 4000, 0.1M ACETATE, 0.2M REMARK 280 AMMONIUM ACETATE, PH 4.6, OIL MICROBACH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.92500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.92500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -50.40776 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.71278 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH I 708 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 83 REMARK 465 HIS A 84 REMARK 465 THR A 85 REMARK 465 GLN A 86 REMARK 465 LEU A 87 REMARK 465 GLU A 88 REMARK 465 PRO A 89 REMARK 465 THR C 85 REMARK 465 GLN C 86 REMARK 465 LEU C 87 REMARK 465 GLU C 88 REMARK 465 HIS G 84 REMARK 465 THR G 85 REMARK 465 GLN G 86 REMARK 465 LEU G 87 REMARK 465 GLU G 88 REMARK 465 ASN H 37 REMARK 465 PRO H 38 REMARK 465 ARG H 39 REMARK 465 LYS H 101 REMARK 465 ASP H 102 REMARK 465 GLU H 103 REMARK 465 LYS H 104 REMARK 465 ILE H 105 REMARK 465 ASP H 106 REMARK 465 LYS H 107 REMARK 465 ILE H 108 REMARK 465 THR H 109 REMARK 465 HIS I 84 REMARK 465 THR I 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS I 34 NZ LYS I 34 2556 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 38 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 49 54.36 38.86 REMARK 500 ASN B 37 77.83 -177.95 REMARK 500 GLN B 49 55.66 31.47 REMARK 500 GLN B 86 1.58 -57.04 REMARK 500 ASN C 37 82.83 -179.03 REMARK 500 PRO C 38 4.36 -64.84 REMARK 500 GLN C 49 60.22 29.50 REMARK 500 ASN D 37 85.70 -151.32 REMARK 500 GLN D 49 50.79 34.64 REMARK 500 SER D 71 0.23 -59.05 REMARK 500 GLN E 49 55.27 29.98 REMARK 500 GLU E 100 167.91 176.40 REMARK 500 GLN F 49 62.53 30.83 REMARK 500 PRO G 38 -4.83 -52.03 REMARK 500 LYS G 50 151.39 -43.17 REMARK 500 ALA H 33 6.00 -64.48 REMARK 500 ARG H 35 38.26 -94.33 REMARK 500 GLN H 49 58.15 35.26 REMARK 500 LYS H 68 -69.27 -166.04 REMARK 500 ARG H 70 18.93 -67.84 REMARK 500 SER H 71 -62.37 -166.74 REMARK 500 ILE H 78 118.66 -162.59 REMARK 500 THR H 85 -168.00 -111.09 REMARK 500 ASN I 37 81.96 -161.51 REMARK 500 GLN I 49 54.67 39.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS H 76 10.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ZV3 A 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 B 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 C 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 D 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 E 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 F 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 G 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 H 1 115 UNP Q60363 PTH_METJA 1 115 DBREF 2ZV3 I 1 115 UNP Q60363 PTH_METJA 1 115 SEQRES 1 A 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 A 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 A 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 A 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 A 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 A 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 A 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 A 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 A 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 B 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 B 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 B 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 B 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 B 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 B 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 B 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 B 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 B 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 C 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 C 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 C 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 C 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 C 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 C 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 C 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 C 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 C 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 D 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 D 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 D 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 D 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 D 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 D 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 D 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 D 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 D 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 E 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 E 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 E 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 E 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 E 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 E 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 E 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 E 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 E 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 F 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 F 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 F 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 F 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 F 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 F 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 F 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 F 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 F 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 G 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 G 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 G 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 G 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 G 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 G 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 G 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 G 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 G 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 H 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 H 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 H 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 H 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 H 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 H 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 H 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 H 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 H 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU SEQRES 1 I 115 MET LYS MET VAL VAL VAL ILE ARG ASN ASP LEU GLY MET SEQRES 2 I 115 GLY LYS GLY LYS MET VAL ALA GLN GLY GLY HIS ALA ILE SEQRES 3 I 115 ILE GLU ALA PHE LEU ASP ALA LYS ARG LYS ASN PRO ARG SEQRES 4 I 115 ALA VAL ASP GLU TRP LEU ARG GLU GLY GLN LYS LYS VAL SEQRES 5 I 115 VAL VAL LYS VAL ASN SER GLU LYS GLU LEU ILE ASP ILE SEQRES 6 I 115 TYR ASN LYS ALA ARG SER GLU GLY LEU PRO CYS SER ILE SEQRES 7 I 115 ILE ARG ASP ALA GLY HIS THR GLN LEU GLU PRO GLY THR SEQRES 8 I 115 LEU THR ALA VAL ALA ILE GLY PRO GLU LYS ASP GLU LYS SEQRES 9 I 115 ILE ASP LYS ILE THR GLY HIS LEU LYS LEU LEU FORMUL 10 HOH *731(H2 O) HELIX 1 1 GLY A 14 ASN A 37 1 24 HELIX 2 2 ASN A 37 GLU A 47 1 11 HELIX 3 3 SER A 58 GLY A 73 1 16 HELIX 4 4 LYS A 101 GLY A 110 1 10 HELIX 5 5 GLY B 14 ASN B 37 1 24 HELIX 6 6 ASN B 37 GLU B 47 1 11 HELIX 7 7 SER B 58 SER B 71 1 14 HELIX 8 8 LYS B 101 GLY B 110 1 10 HELIX 9 9 GLY C 14 ASN C 37 1 24 HELIX 10 10 ASN C 37 GLU C 47 1 11 HELIX 11 11 SER C 58 GLU C 72 1 15 HELIX 12 12 LYS C 101 GLY C 110 1 10 HELIX 13 13 GLY D 14 ASN D 37 1 24 HELIX 14 14 ASN D 37 GLU D 47 1 11 HELIX 15 15 SER D 58 GLU D 72 1 15 HELIX 16 16 LYS D 101 GLY D 110 1 10 HELIX 17 17 GLY E 14 ASN E 37 1 24 HELIX 18 18 ASN E 37 GLU E 47 1 11 HELIX 19 19 SER E 58 GLU E 72 1 15 HELIX 20 20 LYS E 101 GLY E 110 1 10 HELIX 21 21 GLY F 14 ASN F 37 1 24 HELIX 22 22 ASN F 37 GLU F 47 1 11 HELIX 23 23 SER F 58 GLU F 72 1 15 HELIX 24 24 LYS F 101 GLY F 110 1 10 HELIX 25 25 GLY G 14 ASN G 37 1 24 HELIX 26 26 ARG G 39 ARG G 46 1 8 HELIX 27 27 SER G 58 GLU G 72 1 15 HELIX 28 28 LYS G 101 GLY G 110 1 10 HELIX 29 29 GLY H 14 ASP H 32 1 19 HELIX 30 30 ALA H 33 LYS H 36 5 4 HELIX 31 31 ALA H 40 GLU H 47 1 8 HELIX 32 32 SER H 58 ARG H 70 1 13 HELIX 33 33 GLY I 14 ASN I 37 1 24 HELIX 34 34 ASN I 37 GLU I 47 1 11 HELIX 35 35 SER I 58 GLU I 72 1 15 HELIX 36 36 LYS I 101 GLY I 110 1 10 SHEET 1 A 4 LYS A 51 VAL A 56 0 SHEET 2 A 4 LYS A 2 ARG A 8 1 N VAL A 5 O VAL A 52 SHEET 3 A 4 THR A 91 GLU A 100 -1 O VAL A 95 N VAL A 6 SHEET 4 A 4 CYS A 76 ASP A 81 -1 N ASP A 81 O THR A 91 SHEET 1 B 4 LYS B 51 VAL B 56 0 SHEET 2 B 4 LYS B 2 ARG B 8 1 N VAL B 5 O VAL B 52 SHEET 3 B 4 THR B 91 GLU B 100 -1 O VAL B 95 N VAL B 6 SHEET 4 B 4 CYS B 76 ASP B 81 -1 N ASP B 81 O THR B 91 SHEET 1 C 4 LYS C 51 VAL C 56 0 SHEET 2 C 4 LYS C 2 ARG C 8 1 N VAL C 5 O VAL C 52 SHEET 3 C 4 THR C 91 GLU C 100 -1 O VAL C 95 N VAL C 6 SHEET 4 C 4 CYS C 76 ASP C 81 -1 N ILE C 79 O ALA C 94 SHEET 1 D 4 LYS D 51 VAL D 56 0 SHEET 2 D 4 LYS D 2 ARG D 8 1 N VAL D 5 O VAL D 52 SHEET 3 D 4 THR D 91 GLU D 100 -1 O VAL D 95 N VAL D 6 SHEET 4 D 4 CYS D 76 ASP D 81 -1 N ASP D 81 O THR D 91 SHEET 1 E 4 LYS E 51 VAL E 56 0 SHEET 2 E 4 LYS E 2 ARG E 8 1 N VAL E 5 O VAL E 52 SHEET 3 E 4 THR E 91 GLU E 100 -1 O VAL E 95 N VAL E 6 SHEET 4 E 4 CYS E 76 ASP E 81 -1 N ASP E 81 O THR E 91 SHEET 1 F 4 LYS F 51 VAL F 56 0 SHEET 2 F 4 LYS F 2 ARG F 8 1 N VAL F 5 O VAL F 52 SHEET 3 F 4 THR F 91 GLU F 100 -1 O VAL F 95 N VAL F 6 SHEET 4 F 4 CYS F 76 ASP F 81 -1 N ASP F 81 O THR F 91 SHEET 1 G 5 CYS G 76 ARG G 80 0 SHEET 2 G 5 LEU G 92 GLU G 100 -1 O ALA G 94 N ILE G 79 SHEET 3 G 5 LYS G 2 ARG G 8 -1 N VAL G 6 O VAL G 95 SHEET 4 G 5 LYS G 51 VAL G 56 1 O VAL G 52 N VAL G 5 SHEET 5 G 5 LYS G 113 LEU G 114 -1 O LYS G 113 N LYS G 55 SHEET 1 H 4 LYS H 51 VAL H 56 0 SHEET 2 H 4 LYS H 2 ARG H 8 1 N VAL H 5 O VAL H 54 SHEET 3 H 4 THR H 91 GLU H 100 -1 O VAL H 95 N VAL H 6 SHEET 4 H 4 CYS H 76 ASP H 81 -1 N ILE H 79 O ALA H 94 SHEET 1 I 4 LYS I 51 VAL I 56 0 SHEET 2 I 4 LYS I 2 ARG I 8 1 N VAL I 5 O VAL I 52 SHEET 3 I 4 THR I 91 GLU I 100 -1 O VAL I 95 N VAL I 6 SHEET 4 I 4 CYS I 76 ASP I 81 -1 N ASP I 81 O THR I 91 CISPEP 1 GLY A 98 PRO A 99 0 0.35 CISPEP 2 GLY B 98 PRO B 99 0 0.43 CISPEP 3 GLY C 98 PRO C 99 0 -0.10 CISPEP 4 GLY D 98 PRO D 99 0 -0.15 CISPEP 5 GLY E 98 PRO E 99 0 -0.20 CISPEP 6 GLY F 98 PRO F 99 0 0.37 CISPEP 7 GLY G 98 PRO G 99 0 0.35 CISPEP 8 GLY H 98 PRO H 99 0 0.47 CISPEP 9 GLY I 98 PRO I 99 0 0.17 CRYST1 149.850 70.790 96.010 90.00 121.67 90.00 C 1 2 1 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006673 0.000000 0.004117 0.00000 SCALE2 0.000000 0.014126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012238 0.00000