HEADER TRANSFERASE 05-DEC-08 2ZWI
TITLE CRYSTAL STRUCTURE OF ALPHA/BETA-GALACTOSIDE ALPHA-2,3-
TITLE 2 SIALYLTRANSFERASE FROM A LUMINOUS MARINE BACTERIUM, PHOTOBACTERIUM
TITLE 3 PHOSPHOREUM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-/BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 37-409;
COMPND 5 EC: 2.4.99.4;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM PHOSPHOREUM;
SOURCE 3 ORGANISM_TAXID: 659;
SOURCE 4 STRAIN: JT-ISH-467;
SOURCE 5 GENE: PST3-467;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TB1;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A
KEYWDS ALPHA-2, 3-SIALYLTRANSFEASE, JT-ISH-467, PHOTOBACTERIUM PHOSPHOREUM,
KEYWDS 2 GLYCOSYLTRANSFERASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.IWATANI,N.OKINO,M.SAKAKURA,H.KAJIWARA,M.ICHIKAWA,Y.TAKAKURA,
AUTHOR 2 M.KIMURA,M.ITO,T.YAMAMOTO,Y.KAKUTA
REVDAT 4 01-NOV-23 2ZWI 1 REMARK LINK
REVDAT 3 13-JUL-11 2ZWI 1 VERSN
REVDAT 2 30-JUN-09 2ZWI 1 JRNL
REVDAT 1 09-JUN-09 2ZWI 0
JRNL AUTH T.IWATANI,N.OKINO,M.SAKAKURA,H.KAJIWARA,Y.TAKAKURA,M.KIMURA,
JRNL AUTH 2 M.ITO,T.YAMAMOTO,Y.KAKUTA
JRNL TITL CRYSTAL STRUCTURE OF ALPHA/BETA-GALACTOSIDE
JRNL TITL 2 ALPHA2,3-SIALYLTRANSFERASE FROM A LUMINOUS MARINE BACTERIUM,
JRNL TITL 3 PHOTOBACTERIUM PHOSPHOREUM
JRNL REF FEBS LETT. V. 583 2083 2009
JRNL REFN ISSN 0014-5793
JRNL PMID 19467231
JRNL DOI 10.1016/J.FEBSLET.2009.05.032
REMARK 2
REMARK 2 RESOLUTION. 2.01 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.69
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5
REMARK 3 NUMBER OF REFLECTIONS : 41296
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.176
REMARK 3 R VALUE (WORKING SET) : 0.173
REMARK 3 FREE R VALUE : 0.228
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2192
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2845
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.86
REMARK 3 BIN R VALUE (WORKING SET) : 0.1900
REMARK 3 BIN FREE R VALUE SET COUNT : 157
REMARK 3 BIN FREE R VALUE : 0.2530
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6003
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 102
REMARK 3 SOLVENT ATOMS : 366
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 17.69
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.69
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.236
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.315
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6324 ; 0.010 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8584 ; 1.204 ; 1.969
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 776 ; 5.227 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;37.804 ;26.078
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1154 ;14.437 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.321 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 970 ; 0.088 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4721 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3035 ; 0.200 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4439 ; 0.306 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 440 ; 0.136 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.102 ; 0.200
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.222 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.195 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.123 ; 0.200
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3899 ; 0.613 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6199 ; 1.050 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2746 ; 1.589 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2368 ; 2.507 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 2ZWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-08.
REMARK 100 THE DEPOSITION ID IS D_1000028513.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : 93
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL38B1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43495
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 200 DATA REDUNDANCY : 2.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 13.8040
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 2Z4T
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 39.33
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 0.2M KCL, 2MM ZNSO4,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 379
REMARK 465 THR A 380
REMARK 465 GLN A 409
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 48 -140.13 -102.18
REMARK 500 TRP A 121 38.15 -98.10
REMARK 500 ASN A 190 46.81 -82.05
REMARK 500 ILE A 302 -64.97 -99.88
REMARK 500 ALA A 349 63.55 -113.46
REMARK 500 PHE A 373 149.53 -172.43
REMARK 500 ALA B 48 -140.17 -100.63
REMARK 500 TRP B 121 41.08 -104.73
REMARK 500 THR B 278 -168.73 -124.94
REMARK 500 ILE B 302 -64.03 -93.36
REMARK 500 TYR B 336 121.04 -38.52
REMARK 500 ALA B 349 62.69 -115.84
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 410 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 268 OG
REMARK 620 2 HIS A 270 ND1 86.0
REMARK 620 3 ASP A 311 OD1 93.7 119.6
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 2 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH B 22 O
REMARK 620 2 HIS B 270 ND1 93.3
REMARK 620 3 ASP B 311 OD1 90.2 119.8
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 410
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 411
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 412
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P B 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 410
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 411
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 4
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 8
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 9
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 412
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 413
DBREF 2ZWI A 37 409 UNP A5LHX0 A5LHX0_PHOPO 37 409
DBREF 2ZWI B 37 409 UNP A5LHX0 A5LHX0_PHOPO 37 409
SEQRES 1 A 373 LYS ASN LYS THR ILE GLU VAL TYR VAL ASP ARG ALA THR
SEQRES 2 A 373 LEU PRO THR ILE GLN GLN MET THR GLN ILE ILE ASN GLU
SEQRES 3 A 373 ASN SER ASN ASN LYS LYS LEU ILE SER TRP SER ARG TYR
SEQRES 4 A 373 PRO ILE ASN ASP GLU THR LEU LEU GLU SER ILE ASN GLY
SEQRES 5 A 373 SER PHE PHE LYS ASN ARG PRO GLU LEU ILE LYS SER LEU
SEQRES 6 A 373 ASP SER MET ILE LEU THR ASN GLU ILE LYS LYS VAL ILE
SEQRES 7 A 373 ILE ASN GLY ASN THR LEU TRP ALA VAL ASP VAL VAL ASN
SEQRES 8 A 373 ILE ILE LYS SER ILE GLU ALA LEU GLY LYS LYS THR GLU
SEQRES 9 A 373 ILE GLU LEU ASN PHE TYR ASP ASP GLY SER ALA GLU TYR
SEQRES 10 A 373 VAL ARG LEU TYR ASP PHE SER ARG LEU PRO GLU SER GLU
SEQRES 11 A 373 GLN GLU TYR LYS ILE SER LEU SER LYS ASP ASN ILE GLN
SEQRES 12 A 373 SER SER ILE ASN GLY THR GLN PRO PHE ASP ASN SER ILE
SEQRES 13 A 373 GLU ASN ILE TYR GLY PHE SER GLN LEU TYR PRO THR THR
SEQRES 14 A 373 TYR HIS MET LEU ARG ALA ASP ILE PHE GLU THR ASN LEU
SEQRES 15 A 373 PRO LEU THR SER LEU LYS ARG VAL ILE SER ASN ASN ILE
SEQRES 16 A 373 LYS GLN MET LYS TRP ASP TYR PHE THR THR PHE ASN SER
SEQRES 17 A 373 GLN GLN LYS ASN LYS PHE TYR ASN PHE THR GLY PHE ASN
SEQRES 18 A 373 PRO GLU LYS ILE LYS GLU GLN TYR LYS ALA SER PRO HIS
SEQRES 19 A 373 GLU ASN PHE ILE PHE ILE GLY THR ASN SER GLY THR ALA
SEQRES 20 A 373 THR ALA GLU GLN GLN ILE ASP ILE LEU THR GLU ALA LYS
SEQRES 21 A 373 LYS PRO ASP SER PRO ILE ILE THR ASN SER ILE GLN GLY
SEQRES 22 A 373 LEU ASP LEU PHE PHE LYS GLY HIS PRO SER ALA THR TYR
SEQRES 23 A 373 ASN GLN GLN ILE ILE ASP ALA HIS ASN MET ILE GLU ILE
SEQRES 24 A 373 TYR ASN LYS ILE PRO PHE GLU ALA LEU ILE MET THR ASP
SEQRES 25 A 373 ALA LEU PRO ASP ALA VAL GLY GLY MET GLY SER SER VAL
SEQRES 26 A 373 PHE PHE SER LEU PRO ASN THR VAL GLU ASN LYS PHE ILE
SEQRES 27 A 373 PHE TYR LYS SER ASP THR ASP ILE GLU ASN ASN ALA LEU
SEQRES 28 A 373 ILE GLN VAL MET ILE GLU LEU ASN ILE VAL ASN ARG ASN
SEQRES 29 A 373 ASP VAL LYS LEU ILE SER ASP LEU GLN
SEQRES 1 B 373 LYS ASN LYS THR ILE GLU VAL TYR VAL ASP ARG ALA THR
SEQRES 2 B 373 LEU PRO THR ILE GLN GLN MET THR GLN ILE ILE ASN GLU
SEQRES 3 B 373 ASN SER ASN ASN LYS LYS LEU ILE SER TRP SER ARG TYR
SEQRES 4 B 373 PRO ILE ASN ASP GLU THR LEU LEU GLU SER ILE ASN GLY
SEQRES 5 B 373 SER PHE PHE LYS ASN ARG PRO GLU LEU ILE LYS SER LEU
SEQRES 6 B 373 ASP SER MET ILE LEU THR ASN GLU ILE LYS LYS VAL ILE
SEQRES 7 B 373 ILE ASN GLY ASN THR LEU TRP ALA VAL ASP VAL VAL ASN
SEQRES 8 B 373 ILE ILE LYS SER ILE GLU ALA LEU GLY LYS LYS THR GLU
SEQRES 9 B 373 ILE GLU LEU ASN PHE TYR ASP ASP GLY SER ALA GLU TYR
SEQRES 10 B 373 VAL ARG LEU TYR ASP PHE SER ARG LEU PRO GLU SER GLU
SEQRES 11 B 373 GLN GLU TYR LYS ILE SER LEU SER LYS ASP ASN ILE GLN
SEQRES 12 B 373 SER SER ILE ASN GLY THR GLN PRO PHE ASP ASN SER ILE
SEQRES 13 B 373 GLU ASN ILE TYR GLY PHE SER GLN LEU TYR PRO THR THR
SEQRES 14 B 373 TYR HIS MET LEU ARG ALA ASP ILE PHE GLU THR ASN LEU
SEQRES 15 B 373 PRO LEU THR SER LEU LYS ARG VAL ILE SER ASN ASN ILE
SEQRES 16 B 373 LYS GLN MET LYS TRP ASP TYR PHE THR THR PHE ASN SER
SEQRES 17 B 373 GLN GLN LYS ASN LYS PHE TYR ASN PHE THR GLY PHE ASN
SEQRES 18 B 373 PRO GLU LYS ILE LYS GLU GLN TYR LYS ALA SER PRO HIS
SEQRES 19 B 373 GLU ASN PHE ILE PHE ILE GLY THR ASN SER GLY THR ALA
SEQRES 20 B 373 THR ALA GLU GLN GLN ILE ASP ILE LEU THR GLU ALA LYS
SEQRES 21 B 373 LYS PRO ASP SER PRO ILE ILE THR ASN SER ILE GLN GLY
SEQRES 22 B 373 LEU ASP LEU PHE PHE LYS GLY HIS PRO SER ALA THR TYR
SEQRES 23 B 373 ASN GLN GLN ILE ILE ASP ALA HIS ASN MET ILE GLU ILE
SEQRES 24 B 373 TYR ASN LYS ILE PRO PHE GLU ALA LEU ILE MET THR ASP
SEQRES 25 B 373 ALA LEU PRO ASP ALA VAL GLY GLY MET GLY SER SER VAL
SEQRES 26 B 373 PHE PHE SER LEU PRO ASN THR VAL GLU ASN LYS PHE ILE
SEQRES 27 B 373 PHE TYR LYS SER ASP THR ASP ILE GLU ASN ASN ALA LEU
SEQRES 28 B 373 ILE GLN VAL MET ILE GLU LEU ASN ILE VAL ASN ARG ASN
SEQRES 29 B 373 ASP VAL LYS LEU ILE SER ASP LEU GLN
HET C5P A 1 21
HET ZN A 410 1
HET GOL A 3 6
HET GOL A 5 6
HET GOL A 6 6
HET GOL A 7 6
HET CL A 411 1
HET CL A 412 1
HET C5P B 1 21
HET ZN B 2 1
HET GOL B 410 6
HET GOL B 411 6
HET GOL B 4 6
HET GOL B 8 6
HET GOL B 9 6
HET CL B 412 1
HET CL B 413 1
HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE
HETNAM ZN ZINC ION
HETNAM GOL GLYCEROL
HETNAM CL CHLORIDE ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 C5P 2(C9 H14 N3 O8 P)
FORMUL 4 ZN 2(ZN 2+)
FORMUL 5 GOL 9(C3 H8 O3)
FORMUL 9 CL 4(CL 1-)
FORMUL 20 HOH *366(H2 O)
HELIX 1 1 THR A 49 ASN A 63 1 15
HELIX 2 2 ASP A 79 ILE A 86 1 8
HELIX 3 3 ASN A 93 THR A 107 1 15
HELIX 4 4 TRP A 121 LEU A 135 1 15
HELIX 5 5 GLY A 149 LEU A 162 1 14
HELIX 6 6 PRO A 163 GLY A 184 1 22
HELIX 7 7 SER A 191 TYR A 196 1 6
HELIX 8 8 GLY A 197 LEU A 201 5 5
HELIX 9 9 ARG A 210 THR A 216 5 7
HELIX 10 10 LEU A 220 SER A 228 1 9
HELIX 11 11 ASP A 237 THR A 241 5 5
HELIX 12 12 ASN A 243 GLY A 255 1 13
HELIX 13 13 PRO A 258 ALA A 267 1 10
HELIX 14 14 THR A 284 LYS A 296 1 13
HELIX 15 15 TYR A 322 ASN A 331 1 10
HELIX 16 16 PRO A 340 THR A 347 1 8
HELIX 17 17 SER A 360 LEU A 365 1 6
HELIX 18 18 ASN A 385 LEU A 394 1 10
HELIX 19 19 ASN A 398 ASN A 400 5 3
HELIX 20 20 SER A 406 LEU A 408 5 3
HELIX 21 21 THR B 49 ASN B 63 1 15
HELIX 22 22 ASP B 79 ILE B 86 1 8
HELIX 23 23 ASN B 93 LEU B 106 1 14
HELIX 24 24 TRP B 121 ALA B 134 1 14
HELIX 25 25 GLY B 149 ARG B 161 1 13
HELIX 26 26 PRO B 163 GLY B 184 1 22
HELIX 27 27 SER B 191 TYR B 196 1 6
HELIX 28 28 GLY B 197 LEU B 201 5 5
HELIX 29 29 ARG B 210 THR B 216 5 7
HELIX 30 30 LEU B 220 SER B 228 1 9
HELIX 31 31 ASP B 237 PHE B 242 1 6
HELIX 32 32 ASN B 243 GLY B 255 1 13
HELIX 33 33 PRO B 258 ALA B 267 1 10
HELIX 34 34 THR B 284 LYS B 296 1 13
HELIX 35 35 TYR B 322 ASN B 331 1 10
HELIX 36 36 PRO B 340 THR B 347 1 8
HELIX 37 37 SER B 360 LEU B 365 1 6
HELIX 38 38 ASP B 381 ASN B 384 5 4
HELIX 39 39 ASN B 385 LEU B 394 1 10
HELIX 40 40 ASN B 398 ASN B 400 5 3
HELIX 41 41 SER B 406 LEU B 408 5 3
SHEET 1 A 7 GLY A 88 PHE A 90 0
SHEET 2 A 7 LYS A 67 TRP A 72 1 N ILE A 70 O SER A 89
SHEET 3 A 7 LYS A 39 ASP A 46 1 N TYR A 44 O SER A 71
SHEET 4 A 7 ILE A 110 ASN A 118 1 O ILE A 114 N VAL A 43
SHEET 5 A 7 GLU A 140 TYR A 146 1 O GLU A 142 N ILE A 115
SHEET 6 A 7 THR A 204 MET A 208 1 O HIS A 207 N PHE A 145
SHEET 7 A 7 ILE A 231 GLN A 233 1 O LYS A 232 N MET A 208
SHEET 1 B 6 ILE A 333 ILE A 335 0
SHEET 2 B 6 ASP A 311 LYS A 315 1 N PHE A 314 O ILE A 333
SHEET 3 B 6 ASN A 272 ILE A 276 1 N PHE A 273 O ASP A 311
SHEET 4 B 6 ALA A 353 MET A 357 1 O GLY A 355 N ILE A 276
SHEET 5 B 6 GLU A 370 TYR A 376 1 O PHE A 375 N GLY A 356
SHEET 6 B 6 VAL A 402 LEU A 404 1 O LYS A 403 N ILE A 374
SHEET 1 C 7 GLY B 88 PHE B 90 0
SHEET 2 C 7 LYS B 67 TRP B 72 1 N ILE B 70 O SER B 89
SHEET 3 C 7 LYS B 39 ASP B 46 1 N GLU B 42 O LEU B 69
SHEET 4 C 7 ILE B 110 ASN B 118 1 O ILE B 114 N VAL B 43
SHEET 5 C 7 GLU B 140 TYR B 146 1 O ASN B 144 N ILE B 115
SHEET 6 C 7 THR B 204 MET B 208 1 O HIS B 207 N PHE B 145
SHEET 7 C 7 ILE B 231 GLN B 233 1 O LYS B 232 N MET B 208
SHEET 1 D 6 ILE B 333 ILE B 335 0
SHEET 2 D 6 ASP B 311 LYS B 315 1 N PHE B 314 O ILE B 333
SHEET 3 D 6 ASN B 272 ILE B 276 1 N PHE B 275 O LYS B 315
SHEET 4 D 6 ALA B 353 MET B 357 1 O GLY B 355 N ILE B 276
SHEET 5 D 6 GLU B 370 TYR B 376 1 O PHE B 375 N GLY B 356
SHEET 6 D 6 VAL B 402 LEU B 404 1 O LYS B 403 N ILE B 374
LINK OG SER A 268 ZN ZN A 410 1555 1555 2.38
LINK ND1 HIS A 270 ZN ZN A 410 1555 1555 2.06
LINK OD1 ASP A 311 ZN ZN A 410 1555 1555 2.04
LINK ZN ZN B 2 O HOH B 22 1555 1555 1.83
LINK ZN ZN B 2 ND1 HIS B 270 1555 1555 2.02
LINK ZN ZN B 2 OD1 ASP B 311 1555 1555 1.97
SITE 1 AC1 18 GOL A 5 THR A 49 ILE A 276 GLY A 277
SITE 2 AC1 18 LYS A 315 GLY A 316 HIS A 317 PRO A 318
SITE 3 AC1 18 ILE A 339 PRO A 340 PHE A 341 GLU A 342
SITE 4 AC1 18 SER A 359 SER A 360 VAL A 361 HOH A 447
SITE 5 AC1 18 HOH A 456 HOH A 481
SITE 1 AC2 5 GLU A 168 SER A 268 HIS A 270 ASP A 311
SITE 2 AC2 5 HOH A 485
SITE 1 AC3 6 ASP A 46 SER A 71 SER A 73 ARG A 94
SITE 2 AC3 6 ASN B 367 THR B 368
SITE 1 AC4 6 C5P A 1 ASP A 148 GLY A 149 SER A 150
SITE 2 AC4 6 ALA A 151 SER A 360
SITE 1 AC5 8 SER A 165 GLU A 168 LEU A 310 ASP A 311
SITE 2 AC5 8 LEU A 312 ILE A 333 HOH A 449 HOH A 490
SITE 1 AC6 8 LEU A 209 ARG A 210 GLN A 233 TRP A 236
SITE 2 AC6 8 PHE A 363 SER A 364 LEU A 365 HOH A 491
SITE 1 AC7 5 SER A 280 ALA A 320 THR A 321 HOH A 518
SITE 2 AC7 5 LYS B 232
SITE 1 AC8 7 TYR A 265 SER A 268 HIS A 270 ASN A 272
SITE 2 AC8 7 ASP A 311 HOH A 536 HOH A 579
SITE 1 AC9 17 THR B 49 ILE B 276 GLY B 277 LYS B 315
SITE 2 AC9 17 GLY B 316 HIS B 317 PRO B 318 ILE B 339
SITE 3 AC9 17 PRO B 340 PHE B 341 GLU B 342 SER B 359
SITE 4 AC9 17 SER B 360 VAL B 361 HOH B 479 HOH B 502
SITE 5 AC9 17 HOH B 565
SITE 1 BC1 5 HOH B 22 GLU B 168 SER B 268 HIS B 270
SITE 2 BC1 5 ASP B 311
SITE 1 BC2 5 GLU A 62 SER A 64 SER B 280 LYS B 377
SITE 2 BC2 5 HOH B 586
SITE 1 BC3 10 ARG B 210 PHE B 362 LEU B 365 ASN B 367
SITE 2 BC3 10 LEU B 394 ASN B 395 ILE B 396 HOH B 595
SITE 3 BC3 10 HOH B 597 HOH B 598
SITE 1 BC4 6 ASP B 148 GLY B 149 SER B 150 ALA B 151
SITE 2 BC4 6 SER B 360 HOH B 545
SITE 1 BC5 8 TYR B 75 PRO B 76 ASN B 252 PHE B 253
SITE 2 BC5 8 THR B 254 GLY B 255 HOH B 454 HOH B 492
SITE 1 BC6 5 SER B 165 GLU B 168 TYR B 169 ASP B 311
SITE 2 BC6 5 LEU B 312
SITE 1 BC7 5 LYS A 232 SER B 280 ALA B 320 THR B 321
SITE 2 BC7 5 HOH B 485
SITE 1 BC8 6 TYR B 265 SER B 268 HIS B 270 ASN B 272
SITE 2 BC8 6 ASP B 311 HOH B 518
CRYST1 54.429 57.827 59.246 90.06 106.76 103.20 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018373 0.004308 0.005856 0.00000
SCALE2 0.000000 0.017762 0.001277 0.00000
SCALE3 0.000000 0.000000 0.017673 0.00000