HEADER OXIDOREDUCTASE 29-DEC-08 2ZXK TITLE CRYSTAL STRUCTURE OF SEMET-RED CHLOROPHYLL CATABOLITE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRUNCATED THE CHLOROPLAST TRANSIT PEPTIDE; COMPND 5 SYNONYM: RCC REDUCTASE, ATRCCR, ACCELERATED CELL DEATH PROTEIN 2; COMPND 6 EC: 1.3.1.80; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RCCR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS ALPHA-BETA-ALPHA SANDWICH, CHLOROPHYLL CATABOLISM, CHLOROPLAST, KEYWDS 2 COILED COIL, NADP, OXIDOREDUCTASE, PLASTID, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUGISHIMA,Y.KITAMORI,K.FUKUYAMA REVDAT 3 30-OCT-24 2ZXK 1 REMARK SEQADV LINK REVDAT 2 02-JUN-09 2ZXK 1 JRNL REVDAT 1 05-MAY-09 2ZXK 0 JRNL AUTH M.SUGISHIMA,Y.KITAMORI,M.NOGUCHI,T.KOHCHI,K.FUKUYAMA JRNL TITL CRYSTAL STRUCTURE OF RED CHLOROPHYLL CATABOLITE REDUCTASE: JRNL TITL 2 ENLARGEMENT OF THE FERREDOXIN-DEPENDENT BILIN REDUCTASE JRNL TITL 3 FAMILY JRNL REF J.MOL.BIOL. V. 389 376 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19374909 JRNL DOI 10.1016/J.JMB.2009.04.017 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.391 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4148 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5624 ; 1.753 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 7.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;38.155 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;20.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 641 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3129 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1993 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2838 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.266 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 0.789 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4225 ; 1.500 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1568 ; 2.556 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1399 ; 3.986 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000028551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912, 0.97940, 0.96406, REMARK 200 0.99500 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000, 0.1M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.98900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.20200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.76950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.20200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.98900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.76950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 GLY A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 MSE A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 43 REMARK 465 HIS A 44 REMARK 465 ASP A 45 REMARK 465 ASP A 46 REMARK 465 HIS A 47 REMARK 465 LEU A 48 REMARK 465 ARG A 49 REMARK 465 GLU A 262 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 465 LYS A 265 REMARK 465 GLY B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 37 REMARK 465 GLY B 38 REMARK 465 SER B 39 REMARK 465 SER B 40 REMARK 465 MSE B 41 REMARK 465 GLU B 42 REMARK 465 ASP B 43 REMARK 465 HIS B 44 REMARK 465 ASP B 45 REMARK 465 ASP B 46 REMARK 465 HIS B 47 REMARK 465 LEU B 48 REMARK 465 ARG B 49 REMARK 465 ARG B 50 REMARK 465 ILE B 127 REMARK 465 PRO B 128 REMARK 465 THR B 129 REMARK 465 GLY B 130 REMARK 465 VAL B 131 REMARK 465 SER B 132 REMARK 465 VAL B 259 REMARK 465 LYS B 260 REMARK 465 GLU B 261 REMARK 465 GLU B 262 REMARK 465 GLU B 263 REMARK 465 GLU B 264 REMARK 465 LYS B 265 REMARK 465 ILE B 266 REMARK 465 VAL B 267 REMARK 465 LEU B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ILE A 127 CG1 CG2 CD1 REMARK 470 THR A 129 OG1 CG2 REMARK 470 VAL A 131 CG1 CG2 REMARK 470 SER A 160 OG REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ILE A 266 CG1 CG2 CD1 REMARK 470 VAL A 267 CG1 CG2 REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 ASP B 233 CG OD1 OD2 REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 470 MSE B 274 CG SE CE REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 ARG B 285 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 ARG B 298 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 GLU B 314 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 57 OE1 GLU B 101 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 55 58.12 37.14 REMARK 500 ASP A 116 -65.06 -92.28 REMARK 500 SER A 158 -12.47 -140.81 REMARK 500 LYS A 161 31.30 -145.07 REMARK 500 ASN A 178 65.24 -118.74 REMARK 500 ASP A 188 -3.62 -55.03 REMARK 500 ASP A 228 141.78 -172.35 REMARK 500 GLU A 230 -127.39 37.48 REMARK 500 HIS A 242 -50.55 -124.29 REMARK 500 CYS A 258 -67.87 -106.27 REMARK 500 VAL A 259 -70.46 -50.62 REMARK 500 GLN B 78 -55.53 -5.04 REMARK 500 PRO B 96 -60.55 -23.53 REMARK 500 SER B 99 -36.87 -34.51 REMARK 500 LYS B 111 -21.72 -39.48 REMARK 500 SER B 121 148.39 -170.80 REMARK 500 SER B 145 -3.35 -53.75 REMARK 500 SER B 159 -121.14 -154.36 REMARK 500 SER B 160 -7.77 -156.52 REMARK 500 ASN B 178 72.06 -115.11 REMARK 500 ALA B 190 12.13 57.25 REMARK 500 GLU B 256 32.46 -78.79 REMARK 500 LEU B 276 -38.43 -39.50 REMARK 500 ASP B 290 -43.40 -25.62 REMARK 500 ASP B 291 -80.44 -97.17 REMARK 500 LEU B 294 -63.84 -96.48 REMARK 500 MSE B 299 -39.31 -178.57 REMARK 500 GLU B 302 -39.26 -39.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 229 GLU A 230 145.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 199 O REMARK 620 2 LEU A 201 O 80.9 REMARK 620 3 VAL A 204 O 101.2 90.3 REMARK 620 4 HOH A 320 O 88.7 163.5 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 2 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 199 O REMARK 620 2 LEU B 201 O 84.9 REMARK 620 3 VAL B 204 O 111.8 95.6 REMARK 620 4 HOH B 320 O 66.7 151.5 97.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZXL RELATED DB: PDB DBREF 2ZXK A 40 319 UNP Q8LDU4 RCCR_ARATH 40 319 DBREF 2ZXK B 40 319 UNP Q8LDU4 RCCR_ARATH 40 319 SEQADV 2ZXK GLY A 35 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK PRO A 36 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK LEU A 37 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK GLY A 38 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK SER A 39 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK GLY B 35 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK PRO B 36 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK LEU B 37 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK GLY B 38 UNP Q8LDU4 EXPRESSION TAG SEQADV 2ZXK SER B 39 UNP Q8LDU4 EXPRESSION TAG SEQRES 1 A 285 GLY PRO LEU GLY SER SER MSE GLU ASP HIS ASP ASP HIS SEQRES 2 A 285 LEU ARG ARG LYS PHE MSE GLU PHE PRO TYR VAL SER PRO SEQRES 3 A 285 THR ARG LYS GLN LEU MSE VAL ASP LEU MSE SER THR VAL SEQRES 4 A 285 GLU ASN ARG LEU GLN SER GLN LEU LEU PRO CYS ASN LEU SEQRES 5 A 285 PRO PRO ASP VAL ARG ASN PHE ASN ASN PRO ASN GLY SER SEQRES 6 A 285 ALA GLU ALA SER LEU HIS ILE ARG SER GLY ASP LYS SER SEQRES 7 A 285 SER PRO ILE ASP PHE VAL ILE GLY SER TRP ILE HIS CYS SEQRES 8 A 285 LYS ILE PRO THR GLY VAL SER LEU ASN ILE THR SER ILE SEQRES 9 A 285 SER GLY PHE LEU ASN SER SER THR LYS ALA PRO ASN PHE SEQRES 10 A 285 VAL VAL GLU LEU ILE GLN SER SER SER LYS SER LEU VAL SEQRES 11 A 285 LEU ILE LEU ASP LEU PRO HIS ARG LYS ASP LEU VAL LEU SEQRES 12 A 285 ASN PRO ASP TYR LEU LYS GLU TYR TYR GLN ASP THR ALA SEQRES 13 A 285 LEU ASP SER HIS ARG GLN SER LEU LEU LYS LEU PRO GLU SEQRES 14 A 285 VAL ASN PRO TYR VAL SER PRO SER LEU PHE VAL ARG SER SEQRES 15 A 285 ALA PHE SER PRO THR ALA SER MSE LEU LYS ILE ASP ALA SEQRES 16 A 285 GLU GLU GLU ASP LYS LEU GLU GLU ILE LEU ARG ASP HIS SEQRES 17 A 285 VAL SER PRO ALA ALA LYS GLU VAL LEU GLU VAL TRP LEU SEQRES 18 A 285 GLU ARG CYS VAL LYS GLU GLU GLU GLU LYS ILE VAL VAL SEQRES 19 A 285 GLY GLU GLU GLU ARG MSE GLU LEU GLU ARG ARG ASP LYS SEQRES 20 A 285 SER PHE ARG ARG LYS SER ILE GLU ASP ASP LEU ASP LEU SEQRES 21 A 285 GLN PHE PRO ARG MSE PHE GLY GLU GLU VAL SER SER ARG SEQRES 22 A 285 VAL VAL HIS ALA ILE LYS GLU ALA PHE GLY VAL LEU SEQRES 1 B 285 GLY PRO LEU GLY SER SER MSE GLU ASP HIS ASP ASP HIS SEQRES 2 B 285 LEU ARG ARG LYS PHE MSE GLU PHE PRO TYR VAL SER PRO SEQRES 3 B 285 THR ARG LYS GLN LEU MSE VAL ASP LEU MSE SER THR VAL SEQRES 4 B 285 GLU ASN ARG LEU GLN SER GLN LEU LEU PRO CYS ASN LEU SEQRES 5 B 285 PRO PRO ASP VAL ARG ASN PHE ASN ASN PRO ASN GLY SER SEQRES 6 B 285 ALA GLU ALA SER LEU HIS ILE ARG SER GLY ASP LYS SER SEQRES 7 B 285 SER PRO ILE ASP PHE VAL ILE GLY SER TRP ILE HIS CYS SEQRES 8 B 285 LYS ILE PRO THR GLY VAL SER LEU ASN ILE THR SER ILE SEQRES 9 B 285 SER GLY PHE LEU ASN SER SER THR LYS ALA PRO ASN PHE SEQRES 10 B 285 VAL VAL GLU LEU ILE GLN SER SER SER LYS SER LEU VAL SEQRES 11 B 285 LEU ILE LEU ASP LEU PRO HIS ARG LYS ASP LEU VAL LEU SEQRES 12 B 285 ASN PRO ASP TYR LEU LYS GLU TYR TYR GLN ASP THR ALA SEQRES 13 B 285 LEU ASP SER HIS ARG GLN SER LEU LEU LYS LEU PRO GLU SEQRES 14 B 285 VAL ASN PRO TYR VAL SER PRO SER LEU PHE VAL ARG SER SEQRES 15 B 285 ALA PHE SER PRO THR ALA SER MSE LEU LYS ILE ASP ALA SEQRES 16 B 285 GLU GLU GLU ASP LYS LEU GLU GLU ILE LEU ARG ASP HIS SEQRES 17 B 285 VAL SER PRO ALA ALA LYS GLU VAL LEU GLU VAL TRP LEU SEQRES 18 B 285 GLU ARG CYS VAL LYS GLU GLU GLU GLU LYS ILE VAL VAL SEQRES 19 B 285 GLY GLU GLU GLU ARG MSE GLU LEU GLU ARG ARG ASP LYS SEQRES 20 B 285 SER PHE ARG ARG LYS SER ILE GLU ASP ASP LEU ASP LEU SEQRES 21 B 285 GLN PHE PRO ARG MSE PHE GLY GLU GLU VAL SER SER ARG SEQRES 22 B 285 VAL VAL HIS ALA ILE LYS GLU ALA PHE GLY VAL LEU MODRES 2ZXK MSE A 53 MET SELENOMETHIONINE MODRES 2ZXK MSE A 66 MET SELENOMETHIONINE MODRES 2ZXK MSE A 70 MET SELENOMETHIONINE MODRES 2ZXK MSE A 224 MET SELENOMETHIONINE MODRES 2ZXK MSE A 274 MET SELENOMETHIONINE MODRES 2ZXK MSE A 299 MET SELENOMETHIONINE MODRES 2ZXK MSE B 53 MET SELENOMETHIONINE MODRES 2ZXK MSE B 66 MET SELENOMETHIONINE MODRES 2ZXK MSE B 70 MET SELENOMETHIONINE MODRES 2ZXK MSE B 224 MET SELENOMETHIONINE MODRES 2ZXK MSE B 274 MET SELENOMETHIONINE MODRES 2ZXK MSE B 299 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 66 8 HET MSE A 70 8 HET MSE A 224 8 HET MSE A 274 8 HET MSE A 299 8 HET MSE B 53 8 HET MSE B 66 8 HET MSE B 70 8 HET MSE B 224 8 HET MSE B 274 5 HET MSE B 299 8 HET NA A 1 1 HET NA B 2 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *44(H2 O) HELIX 1 1 LYS A 51 PHE A 55 5 5 HELIX 2 2 SER A 59 LEU A 77 1 19 HELIX 3 3 PRO A 87 ARG A 91 1 5 HELIX 4 4 ASN A 178 TYR A 186 1 9 HELIX 5 5 LEU A 191 LEU A 201 1 11 HELIX 6 6 SER A 211 PHE A 218 1 8 HELIX 7 7 GLU A 231 HIS A 242 1 12 HELIX 8 8 HIS A 242 CYS A 258 1 17 HELIX 9 9 GLU A 270 GLY A 301 1 32 HELIX 10 10 GLY A 301 GLY A 317 1 17 HELIX 11 11 LYS B 51 PHE B 55 5 5 HELIX 12 12 SER B 59 LEU B 77 1 19 HELIX 13 13 PRO B 87 ARG B 91 1 5 HELIX 14 14 ASN B 178 TYR B 186 1 9 HELIX 15 15 LEU B 191 LYS B 200 1 10 HELIX 16 16 SER B 211 PHE B 218 1 8 HELIX 17 17 GLU B 231 HIS B 242 1 12 HELIX 18 18 HIS B 242 GLU B 256 1 15 HELIX 19 19 GLY B 269 ASP B 293 1 25 HELIX 20 20 PHE B 296 GLY B 301 1 6 HELIX 21 21 GLU B 303 GLY B 317 1 15 SHEET 1 A 8 ASN A 92 ASN A 94 0 SHEET 2 A 8 ALA A 100 SER A 108 -1 O ALA A 102 N PHE A 93 SHEET 3 A 8 ILE A 115 LYS A 126 -1 O HIS A 124 N GLU A 101 SHEET 4 A 8 SER A 132 LEU A 142 -1 O SER A 139 N ILE A 119 SHEET 5 A 8 PHE A 151 GLN A 157 -1 O GLN A 157 N ASN A 134 SHEET 6 A 8 SER A 162 ASP A 168 -1 O VAL A 164 N ILE A 156 SHEET 7 A 8 SER A 223 ASP A 228 -1 O ILE A 227 N LEU A 163 SHEET 8 A 8 VAL A 204 PRO A 206 -1 N ASN A 205 O LYS A 226 SHEET 1 B 8 ASN B 92 ASN B 94 0 SHEET 2 B 8 ALA B 100 SER B 108 -1 O ALA B 102 N PHE B 93 SHEET 3 B 8 ILE B 115 CYS B 125 -1 O GLY B 120 N HIS B 105 SHEET 4 B 8 ASN B 134 LEU B 142 -1 O ILE B 135 N ILE B 123 SHEET 5 B 8 PHE B 151 GLN B 157 -1 O PHE B 151 N GLY B 140 SHEET 6 B 8 SER B 162 ASP B 168 -1 O ASP B 168 N VAL B 152 SHEET 7 B 8 SER B 223 ASP B 228 -1 O SER B 223 N LEU B 167 SHEET 8 B 8 VAL B 204 PRO B 206 -1 N ASN B 205 O LYS B 226 LINK C PHE A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N GLU A 54 1555 1555 1.32 LINK C LEU A 65 N MSE A 66 1555 1555 1.34 LINK C MSE A 66 N VAL A 67 1555 1555 1.32 LINK C LEU A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N SER A 71 1555 1555 1.35 LINK C SER A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N LEU A 225 1555 1555 1.32 LINK C ARG A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N GLU A 275 1555 1555 1.34 LINK C ARG A 298 N MSE A 299 1555 1555 1.33 LINK C MSE A 299 N PHE A 300 1555 1555 1.33 LINK C PHE B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLU B 54 1555 1555 1.33 LINK C LEU B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N VAL B 67 1555 1555 1.33 LINK C LEU B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N SER B 71 1555 1555 1.33 LINK C SER B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N LEU B 225 1555 1555 1.33 LINK C ARG B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N GLU B 275 1555 1555 1.33 LINK C ARG B 298 N MSE B 299 1555 1555 1.34 LINK C MSE B 299 N PHE B 300 1555 1555 1.33 LINK NA NA A 1 O LEU A 199 1555 1555 2.48 LINK NA NA A 1 O LEU A 201 1555 1555 2.58 LINK NA NA A 1 O VAL A 204 1555 1555 2.43 LINK NA NA A 1 O HOH A 320 1555 1555 2.24 LINK NA NA B 2 O LEU B 199 1555 1555 2.60 LINK NA NA B 2 O LEU B 201 1555 1555 2.57 LINK NA NA B 2 O VAL B 204 1555 1555 2.07 LINK NA NA B 2 O HOH B 320 1555 1555 2.86 SITE 1 AC1 4 LEU A 199 LEU A 201 VAL A 204 HOH A 320 SITE 1 AC2 4 LEU B 199 LEU B 201 VAL B 204 HOH B 320 CRYST1 53.978 83.539 120.404 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008305 0.00000