data_2ZXS # _entry.id 2ZXS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ZXS RCSB RCSB028559 WWPDB D_1000028559 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2011-02-16 _pdbx_database_PDB_obs_spr.pdb_id 3AJN _pdbx_database_PDB_obs_spr.replace_pdb_id 2ZXS _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2ZXS _pdbx_database_status.recvd_initial_deposition_date 2009-01-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ito, L.' 1 'Shiraki, K.' 2 'Yamaguchi, H.' 3 # _citation.id primary _citation.title 'Effect of glycine-amide (GlyAd) on lysozyme' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ito, L.' 1 primary 'Shiraki, K.' 2 primary 'Yamaguchi, H.' 3 # _cell.entry_id 2ZXS _cell.length_a 78.482 _cell.length_b 78.482 _cell.length_c 36.927 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZXS _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn AMINOMETHYLAMIDE 74.082 4 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C, Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue egg _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZXS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GM1 non-polymer . AMINOMETHYLAMIDE GLYCINAMID 'C2 H6 N2 O' 74.082 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZXS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 38.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '2.0M glycine-amide, 0.1M sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2008-06-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.700 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.700 # _reflns.entry_id 2ZXS _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 35.09 _reflns.number_all ? _reflns.number_obs 25672 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rsym_value 0.097 _reflns.pdbx_netI_over_sigmaI 17.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.629 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.42 _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value 0.34 _reflns_shell.meanI_over_sigI_obs 7.6 _reflns_shell.pdbx_redundancy 11.31 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 40732 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZXS _refine.ls_number_reflns_obs 24327 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.09 _refine.ls_d_res_high 1.35 _refine.ls_percent_reflns_obs 98.88 _refine.ls_R_factor_obs 0.21382 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21262 _refine.ls_R_factor_R_free 0.23774 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1301 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.B_iso_mean 8.459 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[3][3] 0.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1HEL _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.075 _refine.pdbx_overall_ESU_R_Free 0.075 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 0.965 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1164 _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 35.09 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 1145 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.003 1.921 ? 1554 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.554 5.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.668 22.182 ? 55 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.398 15.000 ? 186 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.572 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 155 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 918 'X-RAY DIFFRACTION' ? r_nbd_refined 0.191 0.200 ? 599 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.293 0.200 ? 798 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.135 0.200 ? 106 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.117 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.152 0.200 ? 42 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.124 0.200 ? 23 'X-RAY DIFFRACTION' ? r_mcbond_it 0.397 1.500 ? 718 'X-RAY DIFFRACTION' ? r_mcangle_it 0.761 2.000 ? 1141 'X-RAY DIFFRACTION' ? r_scbond_it 1.058 3.000 ? 460 'X-RAY DIFFRACTION' ? r_scangle_it 1.637 4.500 ? 413 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.350 _refine_ls_shell.d_res_low 1.385 _refine_ls_shell.number_reflns_R_work 1719 _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 96.54 _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZXS _struct.title 'Effect of glycine-amide (GlyAd) on lysozyme' _struct.pdbx_descriptor 'Lysozyme C (E.C.3.2.1.17)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZXS _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'lysozyme, hydrolase, Glycosidase, bacteriolytic enzyme, glycine-amide, Allergen, Antimicrobial' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 4 PRO A 79 ? SER A 85 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 5 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 8 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.036 ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.028 ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.027 ? metalc1 metalc ? ? A SER 60 O ? ? ? 1_555 G NA . NA ? ? A SER 60 A NA 135 1_555 ? ? ? ? ? ? ? 2.304 ? metalc2 metalc ? ? A CYS 64 O ? ? ? 1_555 G NA . NA ? ? A CYS 64 A NA 135 1_555 ? ? ? ? ? ? ? 2.584 ? metalc3 metalc ? ? A SER 72 OG ? ? ? 1_555 G NA . NA ? ? A SER 72 A NA 135 1_555 ? ? ? ? ? ? ? 2.482 ? metalc4 metalc ? ? A ARG 73 O ? ? ? 1_555 G NA . NA ? ? A ARG 73 A NA 135 1_555 ? ? ? ? ? ? ? 2.578 ? metalc5 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 135 A HOH 166 1_555 ? ? ? ? ? ? ? 2.368 ? metalc6 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 135 A HOH 176 1_555 ? ? ? ? ? ? ? 2.242 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 A 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 A 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 A 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GM1 A 130' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GM1 A 131' AC3 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE GM1 A 132' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GM1 A 133' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 134' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 135' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TRP A 62 ? TRP A 62 . ? 1_555 ? 2 AC1 4 TRP A 63 ? TRP A 63 . ? 1_555 ? 3 AC1 4 ASP A 101 ? ASP A 101 . ? 1_555 ? 4 AC1 4 GLN A 121 ? GLN A 121 . ? 3_455 ? 5 AC2 9 ASN A 19 ? ASN A 19 . ? 3_454 ? 6 AC2 9 ARG A 21 ? ARG A 21 . ? 3_454 ? 7 AC2 9 GLY A 22 ? GLY A 22 . ? 3_454 ? 8 AC2 9 ASN A 44 ? ASN A 44 . ? 1_555 ? 9 AC2 9 GM1 D . ? GM1 A 132 . ? 1_555 ? 10 AC2 9 HOH H . ? HOH A 177 . ? 1_555 ? 11 AC2 9 HOH H . ? HOH A 204 . ? 1_555 ? 12 AC2 9 HOH H . ? HOH A 254 . ? 1_555 ? 13 AC2 9 HOH H . ? HOH A 272 . ? 1_555 ? 14 AC3 11 ASN A 19 ? ASN A 19 . ? 3_454 ? 15 AC3 11 GLY A 22 ? GLY A 22 . ? 3_454 ? 16 AC3 11 LYS A 33 ? LYS A 33 . ? 1_555 ? 17 AC3 11 PHE A 34 ? PHE A 34 . ? 1_555 ? 18 AC3 11 GLU A 35 ? GLU A 35 . ? 1_555 ? 19 AC3 11 SER A 36 ? SER A 36 . ? 1_555 ? 20 AC3 11 ASN A 37 ? ASN A 37 . ? 1_555 ? 21 AC3 11 GM1 C . ? GM1 A 131 . ? 1_555 ? 22 AC3 11 HOH H . ? HOH A 235 . ? 3_454 ? 23 AC3 11 HOH H . ? HOH A 246 . ? 1_555 ? 24 AC3 11 HOH H . ? HOH A 248 . ? 1_555 ? 25 AC4 9 LEU A 56 ? LEU A 56 . ? 1_555 ? 26 AC4 9 GLN A 57 ? GLN A 57 . ? 1_555 ? 27 AC4 9 ILE A 58 ? ILE A 58 . ? 1_555 ? 28 AC4 9 ASN A 59 ? ASN A 59 . ? 1_555 ? 29 AC4 9 TRP A 63 ? TRP A 63 . ? 1_555 ? 30 AC4 9 ALA A 107 ? ALA A 107 . ? 1_555 ? 31 AC4 9 TRP A 108 ? TRP A 108 . ? 1_555 ? 32 AC4 9 HOH H . ? HOH A 184 . ? 1_555 ? 33 AC4 9 HOH H . ? HOH A 197 . ? 1_555 ? 34 AC5 2 TYR A 23 ? TYR A 23 . ? 1_555 ? 35 AC5 2 ASN A 113 ? ASN A 113 . ? 4_445 ? 36 AC6 6 SER A 60 ? SER A 60 . ? 1_555 ? 37 AC6 6 CYS A 64 ? CYS A 64 . ? 1_555 ? 38 AC6 6 SER A 72 ? SER A 72 . ? 1_555 ? 39 AC6 6 ARG A 73 ? ARG A 73 . ? 1_555 ? 40 AC6 6 HOH H . ? HOH A 166 . ? 1_555 ? 41 AC6 6 HOH H . ? HOH A 176 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZXS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZXS _atom_sites.fract_transf_matrix[1][1] 0.012742 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012742 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027081 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GM1 1 130 1 GM1 GCA A . C 2 GM1 1 131 2 GM1 GCA A . D 2 GM1 1 132 3 GM1 GCA A . E 2 GM1 1 133 4 GM1 GCA A . F 3 CL 1 134 5 CL CL A . G 4 NA 1 135 6 NA NA A . H 5 HOH 1 136 136 HOH HOH A . H 5 HOH 2 137 137 HOH HOH A . H 5 HOH 3 138 138 HOH HOH A . H 5 HOH 4 139 139 HOH HOH A . H 5 HOH 5 140 140 HOH HOH A . H 5 HOH 6 141 141 HOH HOH A . H 5 HOH 7 142 1 HOH HOH A . H 5 HOH 8 143 2 HOH HOH A . H 5 HOH 9 144 3 HOH HOH A . H 5 HOH 10 145 4 HOH HOH A . H 5 HOH 11 146 5 HOH HOH A . H 5 HOH 12 147 6 HOH HOH A . H 5 HOH 13 148 7 HOH HOH A . H 5 HOH 14 149 8 HOH HOH A . H 5 HOH 15 150 9 HOH HOH A . H 5 HOH 16 151 10 HOH HOH A . H 5 HOH 17 152 11 HOH HOH A . H 5 HOH 18 153 12 HOH HOH A . H 5 HOH 19 154 13 HOH HOH A . H 5 HOH 20 155 14 HOH HOH A . H 5 HOH 21 156 15 HOH HOH A . H 5 HOH 22 157 16 HOH HOH A . H 5 HOH 23 158 17 HOH HOH A . H 5 HOH 24 159 18 HOH HOH A . H 5 HOH 25 160 19 HOH HOH A . H 5 HOH 26 161 20 HOH HOH A . H 5 HOH 27 162 21 HOH HOH A . H 5 HOH 28 163 22 HOH HOH A . H 5 HOH 29 164 23 HOH HOH A . H 5 HOH 30 165 24 HOH HOH A . H 5 HOH 31 166 25 HOH HOH A . H 5 HOH 32 167 26 HOH HOH A . H 5 HOH 33 168 27 HOH HOH A . H 5 HOH 34 169 28 HOH HOH A . H 5 HOH 35 170 29 HOH HOH A . H 5 HOH 36 171 30 HOH HOH A . H 5 HOH 37 172 31 HOH HOH A . H 5 HOH 38 173 32 HOH HOH A . H 5 HOH 39 174 33 HOH HOH A . H 5 HOH 40 175 34 HOH HOH A . H 5 HOH 41 176 35 HOH HOH A . H 5 HOH 42 177 36 HOH HOH A . H 5 HOH 43 178 37 HOH HOH A . H 5 HOH 44 179 38 HOH HOH A . H 5 HOH 45 180 39 HOH HOH A . H 5 HOH 46 181 40 HOH HOH A . H 5 HOH 47 182 41 HOH HOH A . H 5 HOH 48 183 42 HOH HOH A . H 5 HOH 49 184 43 HOH HOH A . H 5 HOH 50 185 44 HOH HOH A . H 5 HOH 51 186 45 HOH HOH A . H 5 HOH 52 187 46 HOH HOH A . H 5 HOH 53 188 47 HOH HOH A . H 5 HOH 54 189 48 HOH HOH A . H 5 HOH 55 190 49 HOH HOH A . H 5 HOH 56 191 50 HOH HOH A . H 5 HOH 57 192 51 HOH HOH A . H 5 HOH 58 193 52 HOH HOH A . H 5 HOH 59 194 53 HOH HOH A . H 5 HOH 60 195 54 HOH HOH A . H 5 HOH 61 196 55 HOH HOH A . H 5 HOH 62 197 56 HOH HOH A . H 5 HOH 63 198 57 HOH HOH A . H 5 HOH 64 199 58 HOH HOH A . H 5 HOH 65 200 59 HOH HOH A . H 5 HOH 66 201 60 HOH HOH A . H 5 HOH 67 202 61 HOH HOH A . H 5 HOH 68 203 62 HOH HOH A . H 5 HOH 69 204 63 HOH HOH A . H 5 HOH 70 205 64 HOH HOH A . H 5 HOH 71 206 65 HOH HOH A . H 5 HOH 72 207 66 HOH HOH A . H 5 HOH 73 208 67 HOH HOH A . H 5 HOH 74 209 68 HOH HOH A . H 5 HOH 75 210 69 HOH HOH A . H 5 HOH 76 211 70 HOH HOH A . H 5 HOH 77 212 71 HOH HOH A . H 5 HOH 78 213 72 HOH HOH A . H 5 HOH 79 214 73 HOH HOH A . H 5 HOH 80 215 74 HOH HOH A . H 5 HOH 81 216 75 HOH HOH A . H 5 HOH 82 217 76 HOH HOH A . H 5 HOH 83 218 77 HOH HOH A . H 5 HOH 84 219 78 HOH HOH A . H 5 HOH 85 220 79 HOH HOH A . H 5 HOH 86 221 80 HOH HOH A . H 5 HOH 87 222 81 HOH HOH A . H 5 HOH 88 223 82 HOH HOH A . H 5 HOH 89 224 83 HOH HOH A . H 5 HOH 90 225 84 HOH HOH A . H 5 HOH 91 226 85 HOH HOH A . H 5 HOH 92 227 86 HOH HOH A . H 5 HOH 93 228 87 HOH HOH A . H 5 HOH 94 229 88 HOH HOH A . H 5 HOH 95 230 89 HOH HOH A . H 5 HOH 96 231 90 HOH HOH A . H 5 HOH 97 232 91 HOH HOH A . H 5 HOH 98 233 92 HOH HOH A . H 5 HOH 99 234 93 HOH HOH A . H 5 HOH 100 235 94 HOH HOH A . H 5 HOH 101 236 95 HOH HOH A . H 5 HOH 102 237 96 HOH HOH A . H 5 HOH 103 238 97 HOH HOH A . H 5 HOH 104 239 98 HOH HOH A . H 5 HOH 105 240 99 HOH HOH A . H 5 HOH 106 241 100 HOH HOH A . H 5 HOH 107 242 101 HOH HOH A . H 5 HOH 108 243 102 HOH HOH A . H 5 HOH 109 244 103 HOH HOH A . H 5 HOH 110 245 104 HOH HOH A . H 5 HOH 111 246 105 HOH HOH A . H 5 HOH 112 247 106 HOH HOH A . H 5 HOH 113 248 107 HOH HOH A . H 5 HOH 114 249 108 HOH HOH A . H 5 HOH 115 250 109 HOH HOH A . H 5 HOH 116 251 110 HOH HOH A . H 5 HOH 117 252 111 HOH HOH A . H 5 HOH 118 253 112 HOH HOH A . H 5 HOH 119 254 113 HOH HOH A . H 5 HOH 120 255 114 HOH HOH A . H 5 HOH 121 256 115 HOH HOH A . H 5 HOH 122 257 116 HOH HOH A . H 5 HOH 123 258 117 HOH HOH A . H 5 HOH 124 259 118 HOH HOH A . H 5 HOH 125 260 119 HOH HOH A . H 5 HOH 126 261 120 HOH HOH A . H 5 HOH 127 262 121 HOH HOH A . H 5 HOH 128 263 122 HOH HOH A . H 5 HOH 129 264 123 HOH HOH A . H 5 HOH 130 265 124 HOH HOH A . H 5 HOH 131 266 125 HOH HOH A . H 5 HOH 132 267 126 HOH HOH A . H 5 HOH 133 268 127 HOH HOH A . H 5 HOH 134 269 128 HOH HOH A . H 5 HOH 135 270 129 HOH HOH A . H 5 HOH 136 271 130 HOH HOH A . H 5 HOH 137 272 131 HOH HOH A . H 5 HOH 138 273 132 HOH HOH A . H 5 HOH 139 274 133 HOH HOH A . H 5 HOH 140 275 134 HOH HOH A . H 5 HOH 141 276 135 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 180 ? H HOH . 2 1 A HOH 191 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 60 ? A SER 60 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 88.4 ? 2 O ? A SER 60 ? A SER 60 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 85.6 ? 3 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 168.3 ? 4 O ? A SER 60 ? A SER 60 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 92.4 ? 5 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 87.8 ? 6 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 102.5 ? 7 O ? A SER 60 ? A SER 60 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 166 ? 1_555 101.9 ? 8 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 166 ? 1_555 83.7 ? 9 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 166 ? 1_555 87.7 ? 10 O ? A ARG 73 ? A ARG 73 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 166 ? 1_555 163.1 ? 11 O ? A SER 60 ? A SER 60 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 176 ? 1_555 173.4 ? 12 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 176 ? 1_555 98.0 ? 13 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 176 ? 1_555 88.3 ? 14 O ? A ARG 73 ? A ARG 73 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 176 ? 1_555 86.4 ? 15 O ? H HOH . ? A HOH 166 ? 1_555 NA ? G NA . ? A NA 135 ? 1_555 O ? H HOH . ? A HOH 176 ? 1_555 80.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-02-16 3 'Structure model' 1 2 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 3 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 62 ? ? -131.63 -31.74 2 1 TRP A 62 ? ? -131.19 -31.74 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 AMINOMETHYLAMIDE GM1 3 'CHLORIDE ION' CL 4 'SODIUM ION' NA 5 water HOH #