data_2ZY6 # _entry.id 2ZY6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZY6 pdb_00002zy6 10.2210/pdb2zy6/pdb NDB UR0182 ? ? RCSB RCSB028573 ? ? WWPDB D_1000028573 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' pdbx_struct_special_symmetry 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZY6 _pdbx_database_status.recvd_initial_deposition_date 2009-01-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tanaka, I.' 1 'Yao, M.' 2 'Tanaka, Y.' 3 'Kitago, Y.' 4 'Ymagata, S.' 5 # _citation.id primary _citation.title 'Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand' _citation.journal_abbrev Rna _citation.journal_volume 15 _citation.page_first 1498 _citation.page_last 1506 _citation.year 2009 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19509301 _citation.pdbx_database_id_DOI 10.1261/rna.1614709 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tanaka, Y.' 1 ? primary 'Yamagata, S.' 2 ? primary 'Kitago, Y.' 3 ? primary 'Yamada, Y.' 4 ? primary 'Chimnaronk, S.' 5 ? primary 'Yao, M.' 6 ? primary 'Tanaka, I.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'phenylalanyl transfer RNA' 12575.541 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 5 water nat water 18.015 161 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACCA _entity_poly.pdbx_seq_one_letter_code_can GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 U n 1 18 G n 1 19 G n 1 20 G n 1 21 A n 1 22 A n 1 23 A n 1 24 C n 1 25 C n 1 26 G n 1 27 A n 1 28 G n 1 29 U n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 G n 1 35 C n 1 36 A n 1 37 C n 1 38 C n 1 39 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Nucleotide synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 C 25 25 25 C C A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 G 34 34 34 G G A . n A 1 35 C 35 35 35 C C A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 A 39 39 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 100 100 MG MG A . C 3 CL 1 101 101 CL CL A . D 4 CA 1 102 102 CA CA A . E 4 CA 1 103 103 CA CA A . F 4 CA 1 104 104 CA CA A . G 4 CA 1 105 105 CA CA A . H 4 CA 1 106 106 CA CA A . I 4 CA 1 107 107 CA CA A . J 4 CA 1 108 108 CA CA A . K 5 HOH 1 40 40 HOH HOH A . K 5 HOH 2 41 41 HOH HOH A . K 5 HOH 3 42 42 HOH HOH A . K 5 HOH 4 43 43 HOH HOH A . K 5 HOH 5 44 44 HOH HOH A . K 5 HOH 6 45 45 HOH HOH A . K 5 HOH 7 46 46 HOH HOH A . K 5 HOH 8 47 47 HOH HOH A . K 5 HOH 9 48 48 HOH HOH A . K 5 HOH 10 49 49 HOH HOH A . K 5 HOH 11 50 50 HOH HOH A . K 5 HOH 12 51 51 HOH HOH A . K 5 HOH 13 52 52 HOH HOH A . K 5 HOH 14 53 53 HOH HOH A . K 5 HOH 15 54 54 HOH HOH A . K 5 HOH 16 55 55 HOH HOH A . K 5 HOH 17 56 56 HOH HOH A . K 5 HOH 18 57 57 HOH HOH A . K 5 HOH 19 58 58 HOH HOH A . K 5 HOH 20 59 59 HOH HOH A . K 5 HOH 21 60 60 HOH HOH A . K 5 HOH 22 61 61 HOH HOH A . K 5 HOH 23 62 62 HOH HOH A . K 5 HOH 24 63 63 HOH HOH A . K 5 HOH 25 64 64 HOH HOH A . K 5 HOH 26 65 65 HOH HOH A . K 5 HOH 27 66 66 HOH HOH A . K 5 HOH 28 67 67 HOH HOH A . K 5 HOH 29 68 68 HOH HOH A . K 5 HOH 30 69 69 HOH HOH A . K 5 HOH 31 70 70 HOH HOH A . K 5 HOH 32 71 71 HOH HOH A . K 5 HOH 33 72 72 HOH HOH A . K 5 HOH 34 73 73 HOH HOH A . K 5 HOH 35 74 74 HOH HOH A . K 5 HOH 36 75 75 HOH HOH A . K 5 HOH 37 76 76 HOH HOH A . K 5 HOH 38 77 77 HOH HOH A . K 5 HOH 39 78 78 HOH HOH A . K 5 HOH 40 79 79 HOH HOH A . K 5 HOH 41 80 80 HOH HOH A . K 5 HOH 42 81 81 HOH HOH A . K 5 HOH 43 82 82 HOH HOH A . K 5 HOH 44 83 83 HOH HOH A . K 5 HOH 45 84 84 HOH HOH A . K 5 HOH 46 85 85 HOH HOH A . K 5 HOH 47 86 86 HOH HOH A . K 5 HOH 48 87 87 HOH HOH A . K 5 HOH 49 88 88 HOH HOH A . K 5 HOH 50 89 89 HOH HOH A . K 5 HOH 51 90 90 HOH HOH A . K 5 HOH 52 91 91 HOH HOH A . K 5 HOH 53 92 92 HOH HOH A . K 5 HOH 54 93 93 HOH HOH A . K 5 HOH 55 94 94 HOH HOH A . K 5 HOH 56 95 95 HOH HOH A . K 5 HOH 57 96 96 HOH HOH A . K 5 HOH 58 97 97 HOH HOH A . K 5 HOH 59 98 98 HOH HOH A . K 5 HOH 60 99 99 HOH HOH A . K 5 HOH 61 109 109 HOH HOH A . K 5 HOH 62 110 110 HOH HOH A . K 5 HOH 63 111 111 HOH HOH A . K 5 HOH 64 112 112 HOH HOH A . K 5 HOH 65 113 113 HOH HOH A . K 5 HOH 66 114 114 HOH HOH A . K 5 HOH 67 115 115 HOH HOH A . K 5 HOH 68 116 116 HOH HOH A . K 5 HOH 69 117 117 HOH HOH A . K 5 HOH 70 118 118 HOH HOH A . K 5 HOH 71 119 119 HOH HOH A . K 5 HOH 72 120 120 HOH HOH A . K 5 HOH 73 121 121 HOH HOH A . K 5 HOH 74 122 122 HOH HOH A . K 5 HOH 75 123 123 HOH HOH A . K 5 HOH 76 124 124 HOH HOH A . K 5 HOH 77 125 125 HOH HOH A . K 5 HOH 78 126 126 HOH HOH A . K 5 HOH 79 127 127 HOH HOH A . K 5 HOH 80 128 128 HOH HOH A . K 5 HOH 81 129 129 HOH HOH A . K 5 HOH 82 130 130 HOH HOH A . K 5 HOH 83 131 131 HOH HOH A . K 5 HOH 84 132 132 HOH HOH A . K 5 HOH 85 133 133 HOH HOH A . K 5 HOH 86 134 134 HOH HOH A . K 5 HOH 87 135 135 HOH HOH A . K 5 HOH 88 136 136 HOH HOH A . K 5 HOH 89 137 137 HOH HOH A . K 5 HOH 90 138 138 HOH HOH A . K 5 HOH 91 139 139 HOH HOH A . K 5 HOH 92 140 140 HOH HOH A . K 5 HOH 93 141 141 HOH HOH A . K 5 HOH 94 142 142 HOH HOH A . K 5 HOH 95 143 143 HOH HOH A . K 5 HOH 96 144 144 HOH HOH A . K 5 HOH 97 145 145 HOH HOH A . K 5 HOH 98 146 146 HOH HOH A . K 5 HOH 99 147 147 HOH HOH A . K 5 HOH 100 148 148 HOH HOH A . K 5 HOH 101 149 149 HOH HOH A . K 5 HOH 102 150 150 HOH HOH A . K 5 HOH 103 151 151 HOH HOH A . K 5 HOH 104 152 152 HOH HOH A . K 5 HOH 105 153 153 HOH HOH A . K 5 HOH 106 154 154 HOH HOH A . K 5 HOH 107 155 155 HOH HOH A . K 5 HOH 108 156 156 HOH HOH A . K 5 HOH 109 157 157 HOH HOH A . K 5 HOH 110 158 158 HOH HOH A . K 5 HOH 111 159 159 HOH HOH A . K 5 HOH 112 160 160 HOH HOH A . K 5 HOH 113 161 161 HOH HOH A . K 5 HOH 114 162 1 HOH HOH A . K 5 HOH 115 163 2 HOH HOH A . K 5 HOH 116 164 3 HOH HOH A . K 5 HOH 117 165 4 HOH HOH A . K 5 HOH 118 166 5 HOH HOH A . K 5 HOH 119 167 6 HOH HOH A . K 5 HOH 120 168 7 HOH HOH A . K 5 HOH 121 169 8 HOH HOH A . K 5 HOH 122 170 9 HOH HOH A . K 5 HOH 123 171 10 HOH HOH A . K 5 HOH 124 172 11 HOH HOH A . K 5 HOH 125 173 12 HOH HOH A . K 5 HOH 126 174 13 HOH HOH A . K 5 HOH 127 175 14 HOH HOH A . K 5 HOH 128 176 15 HOH HOH A . K 5 HOH 129 177 16 HOH HOH A . K 5 HOH 130 178 17 HOH HOH A . K 5 HOH 131 179 18 HOH HOH A . K 5 HOH 132 180 19 HOH HOH A . K 5 HOH 133 181 20 HOH HOH A . K 5 HOH 134 182 21 HOH HOH A . K 5 HOH 135 183 22 HOH HOH A . K 5 HOH 136 184 23 HOH HOH A . K 5 HOH 137 185 24 HOH HOH A . K 5 HOH 138 186 25 HOH HOH A . K 5 HOH 139 187 26 HOH HOH A . K 5 HOH 140 188 27 HOH HOH A . K 5 HOH 141 189 28 HOH HOH A . K 5 HOH 142 190 29 HOH HOH A . K 5 HOH 143 191 30 HOH HOH A . K 5 HOH 144 192 31 HOH HOH A . K 5 HOH 145 193 32 HOH HOH A . K 5 HOH 146 194 33 HOH HOH A . K 5 HOH 147 195 34 HOH HOH A . K 5 HOH 148 196 35 HOH HOH A . K 5 HOH 149 197 36 HOH HOH A . K 5 HOH 150 198 37 HOH HOH A . K 5 HOH 151 199 38 HOH HOH A . K 5 HOH 152 200 39 HOH HOH A . K 5 HOH 153 201 100 HOH HOH A . K 5 HOH 154 202 101 HOH HOH A . K 5 HOH 155 203 102 HOH HOH A . K 5 HOH 156 204 103 HOH HOH A . K 5 HOH 157 205 104 HOH HOH A . K 5 HOH 158 206 105 HOH HOH A . K 5 HOH 159 207 106 HOH HOH A . K 5 HOH 160 208 107 HOH HOH A . K 5 HOH 161 209 108 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHELXE 'model building' . ? 5 # _cell.entry_id 2ZY6 _cell.length_a 62.366 _cell.length_b 62.366 _cell.length_c 115.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZY6 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2ZY6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details '40% MPD, 0.1M HEPES, 0.2M Sodium Chloride, 0.2M Calcium acetate, pH7.00, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 HEPES ? ? ? 1 3 1 'Sodium Chloride' ? ? ? 1 4 1 'Calcium acetate' ? ? ? 1 5 1 HOH ? ? ? 1 6 2 MPD ? ? ? 1 7 2 HEPES ? ? ? 1 8 2 'Sodium Chloride' ? ? ? 1 9 2 'Calcium acetate' ? ? ? 1 10 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-11-11 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.70 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.70 # _reflns.entry_id 2ZY6 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 50.0 _reflns.number_all 13064 _reflns.number_obs 13064 _reflns.percent_possible_obs 94.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.076 _reflns.pdbx_netI_over_sigmaI 23.9 _reflns.B_iso_Wilson_estimate 23.8 _reflns.pdbx_redundancy 15.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 90.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.276 _reflns_shell.meanI_over_sigI_obs 12.7 _reflns_shell.pdbx_redundancy 14.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 246 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZY6 _refine.ls_number_reflns_obs 12408 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.42 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 93.22 _refine.ls_R_factor_obs 0.20860 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20700 _refine.ls_R_factor_R_free 0.24037 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 641 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 25.072 _refine.aniso_B[1][1] 0.41 _refine.aniso_B[2][2] 0.41 _refine.aniso_B[3][3] -0.61 _refine.aniso_B[1][2] 0.20 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.130 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.372 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 813 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 983 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 27.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 908 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.213 3.000 ? 1414 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.050 0.200 ? 190 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 395 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.154 0.200 ? 310 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.267 0.200 ? 565 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.102 0.200 ? 131 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.113 0.200 ? 22 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.131 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.112 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.089 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.831 3.000 ? 1296 'X-RAY DIFFRACTION' ? r_scangle_it 1.358 4.500 ? 1414 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.751 _refine_ls_shell.d_res_low 1.796 _refine_ls_shell.number_reflns_R_work 834 _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.percent_reflns_obs 88.62 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2ZY6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2ZY6 _struct.title 'Crystal structure of a truncated tRNA, TPHE39A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZY6 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'truncated tRNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2ZY6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACCA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2ZY6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ZY6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 39 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2ZY6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 39 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 39 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 8 OP1 ? ? ? 1_555 H CA . CA ? ? A U 8 A CA 106 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc2 metalc ? ? A U 11 O4 ? ? ? 1_555 G CA . CA ? ? A U 11 A CA 105 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc3 metalc ? ? A G 12 OP2 ? ? ? 1_555 E CA . CA ? ? A G 12 A CA 103 1_555 ? ? ? ? ? ? ? 2.212 ? ? metalc4 metalc ? ? A U 13 O4 ? ? ? 1_555 B MG . MG ? ? A U 13 A MG 100 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc5 metalc ? ? A U 13 OP2 ? ? ? 1_555 D CA . CA ? ? A U 13 A CA 102 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc6 metalc ? ? A U 17 O4 ? ? ? 1_555 B MG . MG ? ? A U 17 A MG 100 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc7 metalc ? ? A G 18 O6 ? ? ? 1_555 B MG . MG ? ? A G 18 A MG 100 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc8 metalc ? ? A G 19 O6 ? ? ? 1_555 E CA . CA ? ? A G 19 A CA 103 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc9 metalc ? ? A G 26 O6 ? ? ? 1_555 J CA . CA ? ? A G 26 A CA 108 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc10 metalc ? ? K HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 40 A CA 103 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc11 metalc ? ? K HOH . O ? ? ? 1_555 D CA . CA ? ? A HOH 44 A CA 102 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc12 metalc ? ? K HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 50 A CA 105 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc13 metalc ? ? K HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 52 A CA 104 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc14 metalc ? ? K HOH . O ? ? ? 1_555 F CA . CA ? ? A HOH 56 A CA 104 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc15 metalc ? ? K HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 75 A CA 105 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc16 metalc ? ? K HOH . O ? ? ? 1_555 G CA . CA ? ? A HOH 76 A CA 105 1_555 ? ? ? ? ? ? ? 2.672 ? ? metalc17 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 100 A HOH 164 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc18 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 162 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 172 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 179 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc21 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 194 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 166 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 170 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc24 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 181 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc25 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 187 1_555 ? ? ? ? ? ? ? 2.518 ? ? metalc26 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 200 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc27 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 195 1_555 ? ? ? ? ? ? ? 2.254 ? ? metalc28 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 109 1_555 ? ? ? ? ? ? ? 2.553 ? ? metalc29 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 110 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc30 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 111 1_555 ? ? ? ? ? ? ? 2.407 ? ? metalc31 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 114 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc32 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 197 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc33 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 203 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc34 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 204 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc35 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 205 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc36 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 115 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc37 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 206 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc38 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 207 1_555 ? ? ? ? ? ? ? 2.455 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 1 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 2 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 3 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 3 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 3 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 4 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 5 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 5 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 5 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 6 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 7 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 7 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 27 N7 ? ? A U 8 A A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 27 N6 ? ? A U 8 A A 27 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 26 N2 ? ? A A 9 A G 26 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N7 ? ? ? 1_555 A G 19 N1 ? ? A G 12 A G 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog28 hydrog ? ? A G 12 O6 ? ? ? 1_555 A G 19 N2 ? ? A G 12 A G 19 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 12 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 12 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 12 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 8 ? A U 8 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 109 ? 1_555 84.6 ? 2 OP1 ? A U 8 ? A U 8 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 110 ? 1_555 87.8 ? 3 O ? K HOH . ? A HOH 109 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 110 ? 1_555 123.7 ? 4 OP1 ? A U 8 ? A U 8 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 111 ? 1_555 86.6 ? 5 O ? K HOH . ? A HOH 109 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 111 ? 1_555 147.8 ? 6 O ? K HOH . ? A HOH 110 ? 1_555 CA ? H CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 111 ? 1_555 86.8 ? 7 O4 ? A U 11 ? A U 11 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 50 ? 1_555 74.2 ? 8 O4 ? A U 11 ? A U 11 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 75 ? 1_555 133.3 ? 9 O ? K HOH . ? A HOH 50 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 75 ? 1_555 152.5 ? 10 O4 ? A U 11 ? A U 11 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 76 ? 1_555 137.9 ? 11 O ? K HOH . ? A HOH 50 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 76 ? 1_555 72.9 ? 12 O ? K HOH . ? A HOH 75 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 76 ? 1_555 82.1 ? 13 O4 ? A U 11 ? A U 11 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 195 ? 1_555 83.6 ? 14 O ? K HOH . ? A HOH 50 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 195 ? 1_555 93.8 ? 15 O ? K HOH . ? A HOH 75 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 195 ? 1_555 89.7 ? 16 O ? K HOH . ? A HOH 76 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 195 ? 1_555 73.1 ? 17 OP2 ? A G 12 ? A G 12 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 90.5 ? 18 OP2 ? A G 12 ? A G 12 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 40 ? 1_555 96.0 ? 19 O6 ? A G 19 ? A G 19 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 40 ? 1_555 169.2 ? 20 OP2 ? A G 12 ? A G 12 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 166 ? 1_555 94.0 ? 21 O6 ? A G 19 ? A G 19 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 166 ? 1_555 82.3 ? 22 O ? K HOH . ? A HOH 40 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 166 ? 1_555 88.6 ? 23 OP2 ? A G 12 ? A G 12 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 170 ? 1_555 177.3 ? 24 O6 ? A G 19 ? A G 19 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 170 ? 1_555 89.1 ? 25 O ? K HOH . ? A HOH 40 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 170 ? 1_555 84.0 ? 26 O ? K HOH . ? A HOH 166 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 170 ? 1_555 83.3 ? 27 OP2 ? A G 12 ? A G 12 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 181 ? 1_555 97.6 ? 28 O6 ? A G 19 ? A G 19 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 181 ? 1_555 89.0 ? 29 O ? K HOH . ? A HOH 40 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 181 ? 1_555 98.7 ? 30 O ? K HOH . ? A HOH 166 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 181 ? 1_555 165.5 ? 31 O ? K HOH . ? A HOH 170 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 181 ? 1_555 85.0 ? 32 O4 ? A U 13 ? A U 13 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O4 ? A U 17 ? A U 17 ? 1_555 166.0 ? 33 O4 ? A U 13 ? A U 13 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 88.0 ? 34 O4 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O6 ? A G 18 ? A G 18 ? 1_555 84.2 ? 35 O4 ? A U 13 ? A U 13 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O ? K HOH . ? A HOH 164 ? 1_555 99.5 ? 36 O4 ? A U 17 ? A U 17 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O ? K HOH . ? A HOH 164 ? 1_555 92.9 ? 37 O6 ? A G 18 ? A G 18 ? 1_555 MG ? B MG . ? A MG 100 ? 1_555 O ? K HOH . ? A HOH 164 ? 1_555 96.7 ? 38 OP2 ? A U 13 ? A U 13 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 44 ? 1_555 173.8 ? 39 OP2 ? A U 13 ? A U 13 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 162 ? 1_555 97.7 ? 40 O ? K HOH . ? A HOH 44 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 162 ? 1_555 81.9 ? 41 OP2 ? A U 13 ? A U 13 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 172 ? 1_555 103.5 ? 42 O ? K HOH . ? A HOH 44 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 172 ? 1_555 77.6 ? 43 O ? K HOH . ? A HOH 162 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 172 ? 1_555 158.4 ? 44 OP2 ? A U 13 ? A U 13 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 179 ? 1_555 90.1 ? 45 O ? K HOH . ? A HOH 44 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 179 ? 1_555 96.0 ? 46 O ? K HOH . ? A HOH 162 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 179 ? 1_555 89.4 ? 47 O ? K HOH . ? A HOH 172 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 179 ? 1_555 86.1 ? 48 OP2 ? A U 13 ? A U 13 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 194 ? 1_555 85.3 ? 49 O ? K HOH . ? A HOH 44 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 194 ? 1_555 88.6 ? 50 O ? K HOH . ? A HOH 162 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 194 ? 1_555 95.8 ? 51 O ? K HOH . ? A HOH 172 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 194 ? 1_555 90.4 ? 52 O ? K HOH . ? A HOH 179 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 194 ? 1_555 173.5 ? 53 O6 ? A G 26 ? A G 26 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 115 ? 1_555 72.2 ? 54 O6 ? A G 26 ? A G 26 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 79.9 ? 55 O ? K HOH . ? A HOH 115 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 141.8 ? 56 O6 ? A G 26 ? A G 26 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 111.4 ? 57 O ? K HOH . ? A HOH 115 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 89.5 ? 58 O ? K HOH . ? A HOH 206 ? 1_555 CA ? J CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 76.7 ? 59 O ? K HOH . ? A HOH 52 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 56 ? 1_555 70.2 ? 60 O ? K HOH . ? A HOH 52 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 187 ? 1_555 142.7 ? 61 O ? K HOH . ? A HOH 56 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 187 ? 1_555 75.4 ? 62 O ? K HOH . ? A HOH 52 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 200 ? 1_555 78.7 ? 63 O ? K HOH . ? A HOH 56 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 200 ? 1_555 88.6 ? 64 O ? K HOH . ? A HOH 187 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 200 ? 1_555 86.7 ? 65 O ? K HOH . ? A HOH 114 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 197 ? 1_555 140.6 ? 66 O ? K HOH . ? A HOH 114 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 69.5 ? 67 O ? K HOH . ? A HOH 197 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 79.3 ? 68 O ? K HOH . ? A HOH 114 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 145.2 ? 69 O ? K HOH . ? A HOH 197 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 68.5 ? 70 O ? K HOH . ? A HOH 203 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 111.0 ? 71 O ? K HOH . ? A HOH 114 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 107.9 ? 72 O ? K HOH . ? A HOH 197 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 77.2 ? 73 O ? K HOH . ? A HOH 203 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 134.1 ? 74 O ? K HOH . ? A HOH 204 ? 1_555 CA ? I CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 205 ? 1_555 96.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 100 ? 6 'BINDING SITE FOR RESIDUE MG A 100' AC2 Software A CL 101 ? 5 'BINDING SITE FOR RESIDUE CL A 101' AC3 Software A CA 102 ? 6 'BINDING SITE FOR RESIDUE CA A 102' AC4 Software A CA 103 ? 6 'BINDING SITE FOR RESIDUE CA A 103' AC5 Software A CA 104 ? 8 'BINDING SITE FOR RESIDUE CA A 104' AC6 Software A CA 105 ? 7 'BINDING SITE FOR RESIDUE CA A 105' AC7 Software A CA 106 ? 6 'BINDING SITE FOR RESIDUE CA A 106' AC8 Software A CA 107 ? 6 'BINDING SITE FOR RESIDUE CA A 107' AC9 Software A CA 108 ? 4 'BINDING SITE FOR RESIDUE CA A 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 U A 13 ? U A 13 . ? 1_555 ? 2 AC1 6 U A 16 ? U A 16 . ? 12_566 ? 3 AC1 6 U A 16 ? U A 16 . ? 1_555 ? 4 AC1 6 U A 17 ? U A 17 . ? 1_555 ? 5 AC1 6 G A 18 ? G A 18 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH A 164 . ? 1_555 ? 7 AC2 5 C A 15 ? C A 15 . ? 12_566 ? 8 AC2 5 A A 21 ? A A 21 . ? 1_555 ? 9 AC2 5 A A 22 ? A A 22 . ? 1_555 ? 10 AC2 5 HOH K . ? HOH A 56 . ? 12_566 ? 11 AC2 5 HOH K . ? HOH A 172 . ? 5_564 ? 12 AC3 6 U A 13 ? U A 13 . ? 1_555 ? 13 AC3 6 HOH K . ? HOH A 44 . ? 1_555 ? 14 AC3 6 HOH K . ? HOH A 162 . ? 1_555 ? 15 AC3 6 HOH K . ? HOH A 172 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH A 179 . ? 1_555 ? 17 AC3 6 HOH K . ? HOH A 194 . ? 1_555 ? 18 AC4 6 G A 12 ? G A 12 . ? 1_555 ? 19 AC4 6 G A 19 ? G A 19 . ? 1_555 ? 20 AC4 6 HOH K . ? HOH A 40 . ? 1_555 ? 21 AC4 6 HOH K . ? HOH A 166 . ? 1_555 ? 22 AC4 6 HOH K . ? HOH A 170 . ? 1_555 ? 23 AC4 6 HOH K . ? HOH A 181 . ? 1_555 ? 24 AC5 8 HOH K . ? HOH A 52 . ? 1_555 ? 25 AC5 8 HOH K . ? HOH A 52 . ? 7_556 ? 26 AC5 8 HOH K . ? HOH A 56 . ? 1_555 ? 27 AC5 8 HOH K . ? HOH A 56 . ? 7_556 ? 28 AC5 8 HOH K . ? HOH A 187 . ? 1_555 ? 29 AC5 8 HOH K . ? HOH A 187 . ? 7_556 ? 30 AC5 8 HOH K . ? HOH A 200 . ? 7_556 ? 31 AC5 8 HOH K . ? HOH A 200 . ? 1_555 ? 32 AC6 7 U A 11 ? U A 11 . ? 1_555 ? 33 AC6 7 HOH K . ? HOH A 43 . ? 6_655 ? 34 AC6 7 HOH K . ? HOH A 50 . ? 1_555 ? 35 AC6 7 HOH K . ? HOH A 75 . ? 1_555 ? 36 AC6 7 HOH K . ? HOH A 76 . ? 1_555 ? 37 AC6 7 HOH K . ? HOH A 184 . ? 6_655 ? 38 AC6 7 HOH K . ? HOH A 195 . ? 1_555 ? 39 AC7 6 C A 3 ? C A 3 . ? 5_564 ? 40 AC7 6 U A 8 ? U A 8 . ? 1_555 ? 41 AC7 6 C A 37 ? C A 37 . ? 8_566 ? 42 AC7 6 HOH K . ? HOH A 109 . ? 1_555 ? 43 AC7 6 HOH K . ? HOH A 110 . ? 1_555 ? 44 AC7 6 HOH K . ? HOH A 111 . ? 1_555 ? 45 AC8 6 A A 9 ? A A 9 . ? 1_555 ? 46 AC8 6 HOH K . ? HOH A 114 . ? 1_555 ? 47 AC8 6 HOH K . ? HOH A 197 . ? 1_555 ? 48 AC8 6 HOH K . ? HOH A 203 . ? 1_555 ? 49 AC8 6 HOH K . ? HOH A 204 . ? 1_555 ? 50 AC8 6 HOH K . ? HOH A 205 . ? 1_555 ? 51 AC9 4 G A 26 ? G A 26 . ? 1_555 ? 52 AC9 4 HOH K . ? HOH A 115 . ? 1_555 ? 53 AC9 4 HOH K . ? HOH A 206 . ? 1_555 ? 54 AC9 4 HOH K . ? HOH A 207 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 115.17 108.50 6.67 0.70 N 2 1 "C3'" A G 19 ? ? "C2'" A G 19 ? ? "C1'" A G 19 ? ? 97.09 101.30 -4.21 0.70 N 3 1 "C1'" A G 20 ? ? "O4'" A G 20 ? ? "C4'" A G 20 ? ? 101.40 109.70 -8.30 0.70 N 4 1 "O4'" A G 20 ? ? "C1'" A G 20 ? ? N9 A G 20 ? ? 113.82 108.50 5.32 0.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 104 ? F CA . 2 1 A HOH 52 ? K HOH . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id A _pdbx_unobs_or_zero_occ_residues.auth_seq_id 39 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id A _pdbx_unobs_or_zero_occ_residues.label_seq_id 39 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 CL CL CL N N 74 G OP3 O N N 75 G P P N N 76 G OP1 O N N 77 G OP2 O N N 78 G "O5'" O N N 79 G "C5'" C N N 80 G "C4'" C N R 81 G "O4'" O N N 82 G "C3'" C N S 83 G "O3'" O N N 84 G "C2'" C N R 85 G "O2'" O N N 86 G "C1'" C N R 87 G N9 N Y N 88 G C8 C Y N 89 G N7 N Y N 90 G C5 C Y N 91 G C6 C N N 92 G O6 O N N 93 G N1 N N N 94 G C2 C N N 95 G N2 N N N 96 G N3 N N N 97 G C4 C Y N 98 G HOP3 H N N 99 G HOP2 H N N 100 G "H5'" H N N 101 G "H5''" H N N 102 G "H4'" H N N 103 G "H3'" H N N 104 G "HO3'" H N N 105 G "H2'" H N N 106 G "HO2'" H N N 107 G "H1'" H N N 108 G H8 H N N 109 G H1 H N N 110 G H21 H N N 111 G H22 H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 MG MG MG N N 116 U OP3 O N N 117 U P P N N 118 U OP1 O N N 119 U OP2 O N N 120 U "O5'" O N N 121 U "C5'" C N N 122 U "C4'" C N R 123 U "O4'" O N N 124 U "C3'" C N S 125 U "O3'" O N N 126 U "C2'" C N R 127 U "O2'" O N N 128 U "C1'" C N R 129 U N1 N N N 130 U C2 C N N 131 U O2 O N N 132 U N3 N N N 133 U C4 C N N 134 U O4 O N N 135 U C5 C N N 136 U C6 C N N 137 U HOP3 H N N 138 U HOP2 H N N 139 U "H5'" H N N 140 U "H5''" H N N 141 U "H4'" H N N 142 U "H3'" H N N 143 U "HO3'" H N N 144 U "H2'" H N N 145 U "HO2'" H N N 146 U "H1'" H N N 147 U H3 H N N 148 U H5 H N N 149 U H6 H N N 150 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ZY6 'double helix' 2ZY6 'a-form double helix' 2ZY6 'hairpin loop' 2ZY6 'bulge loop' 2ZY6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 35 1_555 -0.266 -0.168 0.544 12.333 -8.978 -3.680 1 A_G1:C35_A A 1 ? A 35 ? 19 1 1 A C 2 1_555 A G 34 1_555 0.240 -0.077 -0.107 18.268 -19.845 1.371 2 A_C2:G34_A A 2 ? A 34 ? 19 1 1 A C 3 1_555 A G 33 1_555 0.229 -0.216 -0.165 6.300 -13.931 0.052 3 A_C3:G33_A A 3 ? A 33 ? 19 1 1 A C 4 1_555 A G 32 1_555 0.261 -0.122 -0.032 3.469 -8.081 0.801 4 A_C4:G32_A A 4 ? A 32 ? 19 1 1 A G 5 1_555 A C 31 1_555 -0.222 -0.107 -0.069 -0.920 -5.018 2.897 5 A_G5:C31_A A 5 ? A 31 ? 19 1 1 A G 6 1_555 A C 30 1_555 -0.169 -0.177 -0.248 -13.131 -14.218 1.139 6 A_G6:C30_A A 6 ? A 30 ? 19 1 1 A A 7 1_555 A U 29 1_555 -0.043 -0.151 -0.004 -12.049 -0.973 -0.593 7 A_A7:U29_A A 7 ? A 29 ? 20 1 1 A U 8 1_555 A A 27 1_555 4.261 -2.384 0.126 8.501 0.133 -93.543 8 A_U8:A27_A A 8 ? A 27 ? 24 4 1 A A 9 1_555 A G 26 1_555 -7.145 -5.456 -0.346 -7.172 -19.957 -28.274 9 A_A9:G26_A A 9 ? A 26 ? ? 10 1 A G 10 1_555 A C 25 1_555 -0.302 -0.121 0.126 -6.042 -21.016 0.570 10 A_G10:C25_A A 10 ? A 25 ? 19 1 1 A G 12 1_555 A C 24 1_555 -0.297 -0.128 -0.529 -25.516 -15.366 -0.313 11 A_G12:C24_A A 12 ? A 24 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 35 1_555 A C 2 1_555 A G 34 1_555 0.308 -1.274 3.170 0.803 5.000 36.130 -2.690 -0.387 2.980 8.013 -1.287 36.472 1 AA_G1C2:G34C35_AA A 1 ? A 35 ? A 2 ? A 34 ? 1 A C 2 1_555 A G 34 1_555 A C 3 1_555 A G 33 1_555 -0.320 -1.897 3.418 -1.592 13.395 33.128 -4.919 0.304 2.501 22.372 2.660 35.698 2 AA_C2C3:G33G34_AA A 2 ? A 34 ? A 3 ? A 33 ? 1 A C 3 1_555 A G 33 1_555 A C 4 1_555 A G 32 1_555 -0.150 -1.643 3.272 -0.942 10.954 31.926 -4.473 0.118 2.587 19.217 1.653 33.719 3 AA_C3C4:G32G33_AA A 3 ? A 33 ? A 4 ? A 32 ? 1 A C 4 1_555 A G 32 1_555 A G 5 1_555 A C 31 1_555 0.422 -1.997 3.240 0.724 11.005 28.295 -5.772 -0.679 2.327 21.506 -1.414 30.328 4 AA_C4G5:C31G32_AA A 4 ? A 32 ? A 5 ? A 31 ? 1 A G 5 1_555 A C 31 1_555 A G 6 1_555 A C 30 1_555 0.312 -2.190 3.507 3.078 9.890 30.548 -5.666 -0.026 2.703 18.128 -5.641 32.217 5 AA_G5G6:C30C31_AA A 5 ? A 31 ? A 6 ? A 30 ? 1 A G 6 1_555 A C 30 1_555 A A 7 1_555 A U 29 1_555 -0.162 -2.017 3.224 -0.418 5.475 34.348 -4.160 0.212 2.879 9.199 0.703 34.771 6 AA_G6A7:U29C30_AA A 6 ? A 30 ? A 7 ? A 29 ? 1 A A 7 1_555 A U 29 1_555 A U 8 1_555 A A 27 1_555 -1.739 -2.510 3.010 -1.675 -3.338 79.038 -1.886 1.323 3.127 -2.622 1.315 79.112 7 AA_A7U8:A27U29_AA A 7 ? A 29 ? A 8 ? A 27 ? 1 A U 8 1_555 A A 27 1_555 A A 9 1_555 A G 26 1_555 3.801 -0.463 3.595 5.438 6.907 -14.695 -2.557 16.012 2.074 -24.364 19.182 -17.112 8 AA_U8A9:G26A27_AA A 8 ? A 27 ? A 9 ? A 26 ? 1 A A 9 1_555 A G 26 1_555 A G 10 1_555 A C 25 1_555 1.883 -0.949 3.729 4.223 0.482 69.972 -0.846 -1.467 3.817 0.420 -3.680 70.085 9 AA_A9G10:C25G26_AA A 9 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A C 25 1_555 A G 12 1_555 A C 24 1_555 -1.374 -1.955 3.626 3.504 11.138 48.146 -3.190 1.910 3.030 13.424 -4.223 49.459 10 AA_G10G12:C24C25_AA A 10 ? A 25 ? A 12 ? A 24 ? # _atom_sites.entry_id 2ZY6 _atom_sites.fract_transf_matrix[1][1] 0.016034 _atom_sites.fract_transf_matrix[1][2] 0.009257 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018515 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008681 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL MG N O P # loop_