HEADER TRANSFERASE 26-JAN-09 2ZYJ
TITLE CRYSTAL STRUCTURE OF LYSN, ALPHA-AMINOADIPATE AMINOTRANSFERASE
TITLE 2 (COMPLEXED WITH N-(5'-PHOSPHOPYRIDOXYL)-L-GLUTAMATE), FROM THERMUS
TITLE 3 THERMOPHILUS HB27
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALPHA-AMINODIPATE AMINOTRANSFERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 2.6.1.39;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
SOURCE 3 ORGANISM_TAXID: 262724;
SOURCE 4 STRAIN: HB27;
SOURCE 5 GENE: LYSN, TT_C0043;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 RIL-CODON PLUS (DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-LYSN, PET-26B(+)
KEYWDS ALPHA-AMINOADIPATE AMINOTRANSFERASE, THERMUS THERMOPHILUS,
KEYWDS 2 AMINOTRANSFERASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.OUCHI,T.TOMITA,T.KUZUYAMA,M.NISHIYAMA
REVDAT 3 01-NOV-23 2ZYJ 1 REMARK
REVDAT 2 13-JUL-11 2ZYJ 1 VERSN
REVDAT 1 01-SEP-09 2ZYJ 0
JRNL AUTH T.OUCHI,T.TOMITA,T.MIYAGAWA,T.KUZUYAMA,M.NISHIYAMA
JRNL TITL DUAL ROLES OF A CONSERVED PAIR, ARG23 AND SER20, IN
JRNL TITL 2 RECOGNITION OF MULTIPLE SUBSTRATES IN ALPHA-AMINOADIPATE
JRNL TITL 3 AMINOTRANSFERASE FROM THERMUS THERMOPHILUS.
JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 388 21 2009
JRNL REFN ISSN 0006-291X
JRNL PMID 19632206
JRNL DOI 10.1016/J.BBRC.2009.07.096
REMARK 2
REMARK 2 RESOLUTION. 1.67 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.47
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 3 NUMBER OF REFLECTIONS : 86525
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.196
REMARK 3 R VALUE (WORKING SET) : 0.193
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 4563
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71
REMARK 3 REFLECTION IN BIN (WORKING SET) : 6114
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20
REMARK 3 BIN R VALUE (WORKING SET) : 0.3020
REMARK 3 BIN FREE R VALUE SET COUNT : 320
REMARK 3 BIN FREE R VALUE : 0.3600
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6188
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 50
REMARK 3 SOLVENT ATOMS : 956
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.18
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.01000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.118
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.165
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6543 ; 0.014 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8874 ; 1.515 ; 2.008
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 834 ; 5.568 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;34.488 ;22.297
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1146 ;15.844 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 77 ;19.936 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 956 ; 0.099 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5043 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3703 ; 0.206 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4500 ; 0.307 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 799 ; 0.182 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 126 ; 0.184 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.225 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4142 ; 0.810 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6457 ; 1.245 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2686 ; 2.091 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2397 ; 3.300 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 2ZYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-09.
REMARK 100 THE DEPOSITION ID IS D_1000028586.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-JAN-09
REMARK 200 TEMPERATURE (KELVIN) : 95
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-6A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.978
REMARK 200 MONOCHROMATOR : SI 111 CHANNEL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91922
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.09700
REMARK 200 R SYM (I) : 0.09700
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.58800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 3CBF
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.98
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.1M HEPES, 0.2M CALCIUM
REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.88050
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.41350
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.67300
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.41350
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88050
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.67300
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27680 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP B 105 O HOH B 854 1.60
REMARK 500 NH2 ARG B 206 O HOH B 869 1.77
REMARK 500 O HOH A 644 O HOH A 958 2.13
REMARK 500 O HOH A 787 O HOH A 790 2.14
REMARK 500 O HOH B 533 O HOH B 940 2.15
REMARK 500 O GLY B 177 O HOH B 881 2.18
REMARK 500 O HOH A 715 O HOH A 882 2.18
REMARK 500 OE2 GLU B 194 O HOH B 619 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 563 O HOH B 639 2354 2.16
REMARK 500 O HOH B 778 O HOH B 896 3445 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU B 28 CA - CB - CG ANGL. DEV. = 16.1 DEGREES
REMARK 500 LEU B 390 CA - CB - CG ANGL. DEV. = 14.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 38 -101.34 -89.59
REMARK 500 PHE A 172 62.39 66.37
REMARK 500 LEU A 208 35.76 -90.83
REMARK 500 LEU A 240 -69.26 -144.27
REMARK 500 ASP A 267 13.34 -159.56
REMARK 500 LEU A 268 -69.51 67.32
REMARK 500 LYS A 333 53.95 25.60
REMARK 500 ALA B 38 -103.37 -94.46
REMARK 500 PHE B 172 63.36 64.85
REMARK 500 LEU B 208 36.85 -94.70
REMARK 500 LEU B 240 -67.06 -141.21
REMARK 500 ASP B 267 14.19 -156.02
REMARK 500 LEU B 268 -71.21 68.30
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU A 500
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGU B 500
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3CBF RELATED DB: PDB
REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-2-AMINOADIPATE COMPLEXED FORM OF THE SAME
REMARK 900 PROTEIN.
REMARK 900 RELATED ID: 2Z1Y RELATED DB: PDB
REMARK 900 N-(5'-PHOSPHOPYRIDOXYL)-L-LEUCINE COMPLEXED FORM OF THE SAME
REMARK 900 PROTEIN.
REMARK 900 RELATED ID: 2EGY RELATED DB: PDB
REMARK 900 PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME PROTEIN.
REMARK 900 RELATED ID: 2ZP7 RELATED DB: PDB
REMARK 900 LEUCINE AND PYRIDOXAL 5'-PHOSPHATE COMPLEXED FORM OF THE SAME
REMARK 900 PROTEIN.
DBREF 2ZYJ A 1 397 UNP Q72LL6 Q72LL6_THET2 1 397
DBREF 2ZYJ B 1 397 UNP Q72LL6 Q72LL6_THET2 1 397
SEQRES 1 A 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY
SEQRES 2 A 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU
SEQRES 3 A 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY
SEQRES 4 A 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA
SEQRES 5 A 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU
SEQRES 6 A 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO
SEQRES 7 A 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO
SEQRES 8 A 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU
SEQRES 9 A 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO
SEQRES 10 A 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN
SEQRES 11 A 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO
SEQRES 12 A 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU
SEQRES 13 A 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE
SEQRES 14 A 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU
SEQRES 15 A 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG
SEQRES 16 A 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU
SEQRES 17 A 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU
SEQRES 18 A 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY
SEQRES 19 A 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA
SEQRES 20 A 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL
SEQRES 21 A 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU
SEQRES 22 A 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE
SEQRES 23 A 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU
SEQRES 24 A 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL
SEQRES 25 A 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET
SEQRES 26 A 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU
SEQRES 27 A 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE
SEQRES 28 A 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU
SEQRES 29 A 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU
SEQRES 30 A 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU
SEQRES 31 A 397 LYS GLY LEU LEU ALA LEU VAL
SEQRES 1 B 397 MET LYS PRO LEU SER TRP SER GLU ALA PHE GLY LYS GLY
SEQRES 2 B 397 ALA GLY ARG ILE GLN ALA SER THR ILE ARG GLU LEU LEU
SEQRES 3 B 397 LYS LEU THR GLN ARG PRO GLY ILE LEU SER PHE ALA GLY
SEQRES 4 B 397 GLY LEU PRO ALA PRO GLU LEU PHE PRO LYS GLU GLU ALA
SEQRES 5 B 397 ALA GLU ALA ALA ALA ARG ILE LEU ARG GLU LYS GLY GLU
SEQRES 6 B 397 VAL ALA LEU GLN TYR SER PRO THR GLU GLY TYR ALA PRO
SEQRES 7 B 397 LEU ARG ALA PHE VAL ALA GLU TRP ILE GLY VAL ARG PRO
SEQRES 8 B 397 GLU GLU VAL LEU ILE THR THR GLY SER GLN GLN ALA LEU
SEQRES 9 B 397 ASP LEU VAL GLY LYS VAL PHE LEU ASP GLU GLY SER PRO
SEQRES 10 B 397 VAL LEU LEU GLU ALA PRO SER TYR MET GLY ALA ILE GLN
SEQRES 11 B 397 ALA PHE ARG LEU GLN GLY PRO ARG PHE LEU THR VAL PRO
SEQRES 12 B 397 ALA GLY GLU GLU GLY PRO ASP LEU ASP ALA LEU GLU GLU
SEQRES 13 B 397 VAL LEU LYS ARG GLU ARG PRO ARG PHE LEU TYR LEU ILE
SEQRES 14 B 397 PRO SER PHE GLN ASN PRO THR GLY GLY LEU THR PRO LEU
SEQRES 15 B 397 PRO ALA ARG LYS ARG LEU LEU GLN MET VAL MET GLU ARG
SEQRES 16 B 397 GLY LEU VAL VAL VAL GLU ASP ASP ALA TYR ARG GLU LEU
SEQRES 17 B 397 TYR PHE GLY GLU ALA ARG LEU PRO SER LEU PHE GLU LEU
SEQRES 18 B 397 ALA ARG GLU ALA GLY TYR PRO GLY VAL ILE TYR LEU GLY
SEQRES 19 B 397 SER PHE SER LYS VAL LEU SER PRO GLY LEU ARG VAL ALA
SEQRES 20 B 397 PHE ALA VAL ALA HIS PRO GLU ALA LEU GLN LYS LEU VAL
SEQRES 21 B 397 GLN ALA LYS GLN GLY ALA ASP LEU HIS THR PRO MET LEU
SEQRES 22 B 397 ASN GLN MET LEU VAL HIS GLU LEU LEU LYS GLU GLY PHE
SEQRES 23 B 397 SER GLU ARG LEU GLU ARG VAL ARG ARG VAL TYR ARG GLU
SEQRES 24 B 397 LYS ALA GLN ALA MET LEU HIS ALA LEU ASP ARG GLU VAL
SEQRES 25 B 397 PRO LYS GLU VAL ARG TYR THR ARG PRO LYS GLY GLY MET
SEQRES 26 B 397 PHE VAL TRP MET GLU LEU PRO LYS GLY LEU SER ALA GLU
SEQRES 27 B 397 GLY LEU PHE ARG ARG ALA LEU GLU GLU ASN VAL ALA PHE
SEQRES 28 B 397 VAL PRO GLY GLY PRO PHE PHE ALA ASN GLY GLY GLY GLU
SEQRES 29 B 397 ASN THR LEU ARG LEU SER TYR ALA THR LEU ASP ARG GLU
SEQRES 30 B 397 GLY ILE ALA GLU GLY VAL ARG ARG LEU GLY ARG ALA LEU
SEQRES 31 B 397 LYS GLY LEU LEU ALA LEU VAL
HET PGU A 500 25
HET PGU B 500 25
HETNAM PGU N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-
HETNAM 2 PGU 4-YL}METHYL)-L-GLUTAMIC ACID
FORMUL 3 PGU 2(C13 H19 N2 O9 P)
FORMUL 5 HOH *956(H2 O)
HELIX 1 1 SER A 5 PHE A 10 1 6
HELIX 2 2 GLY A 11 ILE A 17 5 7
HELIX 3 3 SER A 20 GLN A 30 1 11
HELIX 4 4 ALA A 43 PHE A 47 5 5
HELIX 5 5 PRO A 48 LEU A 68 1 21
HELIX 6 6 TYR A 76 GLY A 88 1 13
HELIX 7 7 ARG A 90 GLU A 92 5 3
HELIX 8 8 THR A 98 LEU A 112 1 15
HELIX 9 9 TYR A 125 LEU A 134 1 10
HELIX 10 10 ASP A 150 GLU A 161 1 12
HELIX 11 11 PRO A 181 GLY A 196 1 16
HELIX 12 12 SER A 217 GLY A 226 1 10
HELIX 13 13 SER A 241 ARG A 245 5 5
HELIX 14 14 HIS A 252 LEU A 268 1 17
HELIX 15 15 PRO A 271 LYS A 283 1 13
HELIX 16 16 GLY A 285 VAL A 312 1 28
HELIX 17 17 SER A 336 GLU A 347 1 12
HELIX 18 18 GLY A 355 PHE A 358 5 4
HELIX 19 19 ASP A 375 VAL A 397 1 23
HELIX 20 20 SER B 5 PHE B 10 1 6
HELIX 21 21 GLY B 11 ARG B 16 1 6
HELIX 22 22 SER B 20 GLN B 30 1 11
HELIX 23 23 ALA B 43 PHE B 47 5 5
HELIX 24 24 PRO B 48 GLN B 69 1 22
HELIX 25 25 TYR B 76 GLY B 88 1 13
HELIX 26 26 ARG B 90 GLU B 92 5 3
HELIX 27 27 GLY B 99 LEU B 112 1 14
HELIX 28 28 TYR B 125 LEU B 134 1 10
HELIX 29 29 ASP B 150 LYS B 159 1 10
HELIX 30 30 PRO B 181 GLY B 196 1 16
HELIX 31 31 SER B 217 GLY B 226 1 10
HELIX 32 32 HIS B 252 LEU B 268 1 17
HELIX 33 33 PRO B 271 LYS B 283 1 13
HELIX 34 34 GLY B 285 VAL B 312 1 28
HELIX 35 35 SER B 336 GLU B 347 1 12
HELIX 36 36 GLY B 355 PHE B 358 5 4
HELIX 37 37 ASP B 375 VAL B 397 1 23
SHEET 1 A 5 LEU A 35 PHE A 37 0
SHEET 2 A 5 VAL A 349 PRO A 353 1 O ALA A 350 N PHE A 37
SHEET 3 A 5 THR A 366 SER A 370 -1 O ARG A 368 N VAL A 352
SHEET 4 A 5 PHE A 326 GLU A 330 -1 N VAL A 327 O LEU A 369
SHEET 5 A 5 ARG A 317 TYR A 318 -1 N ARG A 317 O GLU A 330
SHEET 1 B 5 VAL A 94 THR A 97 0
SHEET 2 B 5 ALA A 247 VAL A 250 -1 O ALA A 249 N LEU A 95
SHEET 3 B 5 VAL A 230 SER A 235 -1 N GLY A 234 O PHE A 248
SHEET 4 B 5 VAL A 199 ASP A 202 1 N VAL A 199 O ILE A 231
SHEET 5 B 5 LEU A 166 LEU A 168 1 N LEU A 166 O VAL A 200
SHEET 1 C 3 PRO A 117 ALA A 122 0
SHEET 2 C 3 ARG A 138 GLY A 145 1 O LEU A 140 N VAL A 118
SHEET 3 C 3 GLY A 148 PRO A 149 -1 O GLY A 148 N GLY A 145
SHEET 1 D 5 LEU B 35 PHE B 37 0
SHEET 2 D 5 VAL B 349 PRO B 353 1 O ALA B 350 N PHE B 37
SHEET 3 D 5 THR B 366 SER B 370 -1 O ARG B 368 N VAL B 352
SHEET 4 D 5 PHE B 326 GLU B 330 -1 N VAL B 327 O LEU B 369
SHEET 5 D 5 ARG B 317 TYR B 318 -1 N ARG B 317 O GLU B 330
SHEET 1 E 8 VAL B 94 THR B 97 0
SHEET 2 E 8 ALA B 247 VAL B 250 -1 O ALA B 249 N LEU B 95
SHEET 3 E 8 VAL B 230 SER B 235 -1 N GLY B 234 O PHE B 248
SHEET 4 E 8 VAL B 199 ASP B 202 1 N VAL B 199 O ILE B 231
SHEET 5 E 8 LEU B 166 LEU B 168 1 N LEU B 168 O ASP B 202
SHEET 6 E 8 PRO B 117 ALA B 122 1 N LEU B 119 O TYR B 167
SHEET 7 E 8 ARG B 138 GLY B 145 1 O LEU B 140 N VAL B 118
SHEET 8 E 8 GLY B 148 PRO B 149 -1 O GLY B 148 N GLY B 145
CISPEP 1 ALA A 122 PRO A 123 0 1.72
CISPEP 2 ASN A 174 PRO A 175 0 9.48
CISPEP 3 ALA B 122 PRO B 123 0 -5.74
CISPEP 4 ASN B 174 PRO B 175 0 11.33
SITE 1 AC1 20 ILE A 22 ARG A 23 GLY A 39 GLY A 40
SITE 2 AC1 20 GLY A 99 SER A 100 GLN A 101 TYR A 125
SITE 3 AC1 20 ASN A 174 ASP A 202 TYR A 205 SER A 235
SITE 4 AC1 20 SER A 237 LYS A 238 ARG A 245 ARG A 368
SITE 5 AC1 20 HOH A 544 HOH A 622 TYR B 70 LEU B 268
SITE 1 AC2 19 TYR A 70 ILE B 22 ARG B 23 GLY B 39
SITE 2 AC2 19 GLY B 40 GLY B 99 SER B 100 GLN B 101
SITE 3 AC2 19 TYR B 125 ASN B 174 ASP B 202 TYR B 205
SITE 4 AC2 19 SER B 235 SER B 237 LYS B 238 ARG B 245
SITE 5 AC2 19 ARG B 368 HOH B 512 HOH B 617
CRYST1 55.761 93.346 150.827 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017934 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010713 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006630 0.00000