HEADER OXIDOREDUCTASE 28-JAN-09 2ZYQ TITLE CRYSTAL STRUCTURE OF THE HSAC EXTRADIOL DIOXYGENASE FROM M. TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EXTRADIOL RING-CLEAVAGE DIOXYGENASE, 23OHBP OXYGENASE, 2,3- COMPND 5 DIHYDROXYBIPHENYL DIOXYGENASE, 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, COMPND 6 DHBD; COMPND 7 EC: 1.13.11.39; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIOXYGENASE, EXTRADIOL, DHSA, TB, CATECHOL, CHOLESTEROL, STEROID, KEYWDS 2 AROMATIC HYDROCARBONS CATABOLISM, IRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.D'ANGELO,K.C.YAM,L.D.ELTIS,N.STRYNADKA REVDAT 3 01-NOV-23 2ZYQ 1 REMARK LINK REVDAT 2 02-FEB-10 2ZYQ 1 JRNL REVDAT 1 10-MAR-09 2ZYQ 0 JRNL AUTH K.C.YAM,I.D'ANGELO,R.KALSCHEUER,H.ZHU,J.X.WANG,V.SNIECKUS, JRNL AUTH 2 L.H.LY,P.J.CONVERSE,W.R.JACOBS,N.STRYNADKA,L.D.ELTIS JRNL TITL STUDIES OF A RING-CLEAVING DIOXYGENASE ILLUMINATE THE ROLE JRNL TITL 2 OF CHOLESTEROL METABOLISM IN THE PATHOGENESIS OF JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS. JRNL REF PLOS PATHOG. V. 5 00344 2009 JRNL REFN ISSN 1553-7366 JRNL PMID 19300498 JRNL DOI 10.1371/JOURNAL.PPAT.1000344 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 675 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.015 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.673 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ;10.497 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;30.827 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;16.146 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;17.957 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.132 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.007 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.207 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.298 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.176 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.197 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.169 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; 0.893 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 1.344 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000028593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.80, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.86850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.86850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.86850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.86850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.86850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.86850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 298 REMARK 465 ARG A 299 REMARK 465 GLY A 300 REMARK 465 MET B 1 REMARK 465 ALA B 298 REMARK 465 ARG B 299 REMARK 465 GLY B 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 330 O HOH A 587 1.67 REMARK 500 O HOH A 304 O HOH A 613 2.10 REMARK 500 OE1 GLU A 31 O HOH A 637 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 112 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 167 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 246 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 246 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 26 -60.81 -101.90 REMARK 500 PRO A 36 -176.40 -13.25 REMARK 500 ASP A 45 -159.36 -164.92 REMARK 500 THR A 138 -95.20 -123.86 REMARK 500 LEU A 251 19.64 55.55 REMARK 500 VAL B 26 -63.56 -103.12 REMARK 500 PRO B 36 -163.38 -58.38 REMARK 500 ASP B 45 -162.22 -170.31 REMARK 500 LEU B 62 -65.52 -93.07 REMARK 500 ASN B 70 -179.89 -170.90 REMARK 500 THR B 138 -93.68 -121.69 REMARK 500 ALA B 183 -6.64 -57.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 36 GLU A 37 57.78 REMARK 500 SER A 111 GLY A 112 114.00 REMARK 500 GLY A 185 PRO A 186 -129.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 HIS A 215 NE2 102.8 REMARK 620 3 GLU A 266 OE1 110.2 93.0 REMARK 620 4 HOH A 302 O 93.6 89.2 155.0 REMARK 620 5 HOH A 303 O 97.8 159.2 82.7 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 145 NE2 REMARK 620 2 HIS B 215 NE2 102.6 REMARK 620 3 GLU B 266 OE1 114.3 86.8 REMARK 620 4 HOH B 303 O 96.5 90.6 149.0 REMARK 620 5 HOH B 304 O 97.1 160.2 86.7 85.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZI8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HSAC IN COMPLEX WITH 3,4 DHSA DBREF 2ZYQ A 1 300 UNP P96850 P96850_MYCTU 1 300 DBREF 2ZYQ B 1 300 UNP P96850 P96850_MYCTU 1 300 SEQRES 1 A 300 MET SER ILE ARG SER LEU GLY TYR LEU ARG ILE GLU ALA SEQRES 2 A 300 THR ASP MET ALA ALA TRP ARG GLU TYR GLY LEU LYS VAL SEQRES 3 A 300 LEU GLY MET VAL GLU GLY LYS GLY ALA PRO GLU GLY ALA SEQRES 4 A 300 LEU TYR LEU ARG MET ASP ASP PHE PRO ALA ARG LEU VAL SEQRES 5 A 300 VAL VAL PRO GLY GLU HIS ASP ARG LEU LEU GLU ALA GLY SEQRES 6 A 300 TRP GLU CYS ALA ASN ALA GLU GLY LEU GLN GLU ILE ARG SEQRES 7 A 300 ASN ARG LEU ASP LEU GLU GLY THR PRO TYR LYS GLU ALA SEQRES 8 A 300 THR ALA ALA GLU LEU ALA ASP ARG ARG VAL ASP GLU MET SEQRES 9 A 300 ILE ARG PHE ALA ASP PRO SER GLY ASN CYS LEU GLU VAL SEQRES 10 A 300 PHE HIS GLY THR ALA LEU GLU HIS ARG ARG VAL VAL SER SEQRES 11 A 300 PRO TYR GLY HIS ARG PHE VAL THR GLY GLU GLN GLY MET SEQRES 12 A 300 GLY HIS VAL VAL LEU SER THR ARG ASP ASP ALA GLU ALA SEQRES 13 A 300 LEU HIS PHE TYR ARG ASP VAL LEU GLY PHE ARG LEU ARG SEQRES 14 A 300 ASP SER MET ARG LEU PRO PRO GLN MET VAL GLY ARG PRO SEQRES 15 A 300 ALA ASP GLY PRO PRO ALA TRP LEU ARG PHE PHE GLY CYS SEQRES 16 A 300 ASN PRO ARG HIS HIS SER LEU ALA PHE LEU PRO MET PRO SEQRES 17 A 300 THR SER SER GLY ILE VAL HIS LEU MET VAL GLU VAL GLU SEQRES 18 A 300 GLN ALA ASP ASP VAL GLY LEU CYS LEU ASP ARG ALA LEU SEQRES 19 A 300 ARG ARG LYS VAL PRO MET SER ALA THR LEU GLY ARG HIS SEQRES 20 A 300 VAL ASN ASP LEU MET LEU SER PHE TYR MET LYS THR PRO SEQRES 21 A 300 GLY GLY PHE ASP ILE GLU PHE GLY CYS GLU GLY ARG GLN SEQRES 22 A 300 VAL ASP ASP ARG ASP TRP ILE ALA ARG GLU SER THR ALA SEQRES 23 A 300 VAL SER LEU TRP GLY HIS ASP PHE THR VAL GLY ALA ARG SEQRES 24 A 300 GLY SEQRES 1 B 300 MET SER ILE ARG SER LEU GLY TYR LEU ARG ILE GLU ALA SEQRES 2 B 300 THR ASP MET ALA ALA TRP ARG GLU TYR GLY LEU LYS VAL SEQRES 3 B 300 LEU GLY MET VAL GLU GLY LYS GLY ALA PRO GLU GLY ALA SEQRES 4 B 300 LEU TYR LEU ARG MET ASP ASP PHE PRO ALA ARG LEU VAL SEQRES 5 B 300 VAL VAL PRO GLY GLU HIS ASP ARG LEU LEU GLU ALA GLY SEQRES 6 B 300 TRP GLU CYS ALA ASN ALA GLU GLY LEU GLN GLU ILE ARG SEQRES 7 B 300 ASN ARG LEU ASP LEU GLU GLY THR PRO TYR LYS GLU ALA SEQRES 8 B 300 THR ALA ALA GLU LEU ALA ASP ARG ARG VAL ASP GLU MET SEQRES 9 B 300 ILE ARG PHE ALA ASP PRO SER GLY ASN CYS LEU GLU VAL SEQRES 10 B 300 PHE HIS GLY THR ALA LEU GLU HIS ARG ARG VAL VAL SER SEQRES 11 B 300 PRO TYR GLY HIS ARG PHE VAL THR GLY GLU GLN GLY MET SEQRES 12 B 300 GLY HIS VAL VAL LEU SER THR ARG ASP ASP ALA GLU ALA SEQRES 13 B 300 LEU HIS PHE TYR ARG ASP VAL LEU GLY PHE ARG LEU ARG SEQRES 14 B 300 ASP SER MET ARG LEU PRO PRO GLN MET VAL GLY ARG PRO SEQRES 15 B 300 ALA ASP GLY PRO PRO ALA TRP LEU ARG PHE PHE GLY CYS SEQRES 16 B 300 ASN PRO ARG HIS HIS SER LEU ALA PHE LEU PRO MET PRO SEQRES 17 B 300 THR SER SER GLY ILE VAL HIS LEU MET VAL GLU VAL GLU SEQRES 18 B 300 GLN ALA ASP ASP VAL GLY LEU CYS LEU ASP ARG ALA LEU SEQRES 19 B 300 ARG ARG LYS VAL PRO MET SER ALA THR LEU GLY ARG HIS SEQRES 20 B 300 VAL ASN ASP LEU MET LEU SER PHE TYR MET LYS THR PRO SEQRES 21 B 300 GLY GLY PHE ASP ILE GLU PHE GLY CYS GLU GLY ARG GLN SEQRES 22 B 300 VAL ASP ASP ARG ASP TRP ILE ALA ARG GLU SER THR ALA SEQRES 23 B 300 VAL SER LEU TRP GLY HIS ASP PHE THR VAL GLY ALA ARG SEQRES 24 B 300 GLY HET FE2 A 301 1 HET FE2 B 301 1 HET TAR B 302 10 HETNAM FE2 FE (II) ION HETNAM TAR D(-)-TARTARIC ACID FORMUL 3 FE2 2(FE 2+) FORMUL 5 TAR C4 H6 O6 FORMUL 6 HOH *675(H2 O) HELIX 1 1 ASP A 15 VAL A 26 1 12 HELIX 2 2 ASN A 70 GLY A 85 1 16 HELIX 3 3 THR A 92 ARG A 100 1 9 HELIX 4 4 THR A 138 GLY A 142 5 5 HELIX 5 5 ASP A 152 ASP A 162 1 11 HELIX 6 6 PRO A 175 GLY A 180 5 6 HELIX 7 7 GLN A 222 ARG A 236 1 15 HELIX 8 8 ASP B 15 VAL B 26 1 12 HELIX 9 9 ASN B 70 GLY B 85 1 16 HELIX 10 10 THR B 92 ARG B 100 1 9 HELIX 11 11 THR B 138 GLY B 142 5 5 HELIX 12 12 ASP B 152 ARG B 161 1 10 HELIX 13 13 PRO B 175 GLY B 180 5 6 HELIX 14 14 GLN B 222 ARG B 236 1 15 HELIX 15 15 ASP B 293 GLY B 297 5 5 SHEET 1 A 8 VAL A 30 GLU A 31 0 SHEET 2 A 8 LEU A 40 ARG A 43 -1 O ARG A 43 N VAL A 30 SHEET 3 A 8 LEU A 51 PRO A 55 -1 O VAL A 53 N LEU A 40 SHEET 4 A 8 SER A 5 ALA A 13 1 N ILE A 11 O VAL A 54 SHEET 5 A 8 ARG A 60 GLU A 67 -1 O LEU A 62 N ARG A 10 SHEET 6 A 8 CYS A 114 HIS A 119 1 O GLU A 116 N TRP A 66 SHEET 7 A 8 GLU A 103 ALA A 108 -1 N PHE A 107 O LEU A 115 SHEET 8 A 8 LYS A 89 GLU A 90 -1 N LYS A 89 O ARG A 106 SHEET 1 B10 ARG A 282 GLU A 283 0 SHEET 2 B10 ARG A 167 LEU A 174 1 N SER A 171 O ARG A 282 SHEET 3 B10 ALA A 188 GLY A 194 -1 O LEU A 190 N MET A 172 SHEET 4 B10 LEU A 202 LEU A 205 -1 O LEU A 202 N PHE A 193 SHEET 5 B10 HIS A 145 SER A 149 1 N LEU A 148 O LEU A 205 SHEET 6 B10 ILE A 213 GLU A 219 -1 O VAL A 214 N VAL A 147 SHEET 7 B10 ASP A 264 CYS A 269 1 O GLU A 266 N LEU A 216 SHEET 8 B10 LEU A 253 LYS A 258 -1 N MET A 257 O ILE A 265 SHEET 9 B10 MET A 240 HIS A 247 -1 N SER A 241 O TYR A 256 SHEET 10 B10 SER A 288 GLY A 291 -1 O LEU A 289 N ARG A 246 SHEET 1 C 8 VAL B 30 GLU B 31 0 SHEET 2 C 8 LEU B 40 ARG B 43 -1 O ARG B 43 N VAL B 30 SHEET 3 C 8 LEU B 51 PRO B 55 -1 O LEU B 51 N LEU B 42 SHEET 4 C 8 ILE B 3 ALA B 13 1 N ILE B 11 O VAL B 54 SHEET 5 C 8 ARG B 60 CYS B 68 -1 O GLU B 67 N ARG B 4 SHEET 6 C 8 CYS B 114 HIS B 119 1 O GLU B 116 N TRP B 66 SHEET 7 C 8 GLU B 103 ALA B 108 -1 N PHE B 107 O LEU B 115 SHEET 8 C 8 LYS B 89 GLU B 90 -1 N LYS B 89 O ARG B 106 SHEET 1 D10 ARG B 282 GLU B 283 0 SHEET 2 D10 ARG B 167 LEU B 174 1 N SER B 171 O ARG B 282 SHEET 3 D10 ALA B 188 GLY B 194 -1 O PHE B 192 N ARG B 169 SHEET 4 D10 LEU B 202 LEU B 205 -1 O LEU B 202 N PHE B 193 SHEET 5 D10 HIS B 145 SER B 149 1 N LEU B 148 O ALA B 203 SHEET 6 D10 ILE B 213 GLU B 219 -1 O VAL B 214 N VAL B 147 SHEET 7 D10 ASP B 264 CYS B 269 1 O GLU B 266 N LEU B 216 SHEET 8 D10 LEU B 253 LYS B 258 -1 N MET B 257 O ILE B 265 SHEET 9 D10 MET B 240 HIS B 247 -1 N SER B 241 O TYR B 256 SHEET 10 D10 SER B 288 GLY B 291 -1 O LEU B 289 N ARG B 246 LINK NE2 HIS A 145 FE FE2 A 301 1555 1555 2.15 LINK NE2 HIS A 215 FE FE2 A 301 1555 1555 2.25 LINK OE1 GLU A 266 FE FE2 A 301 1555 1555 2.03 LINK FE FE2 A 301 O HOH A 302 1555 1555 2.12 LINK FE FE2 A 301 O HOH A 303 1555 1555 2.18 LINK NE2 HIS B 145 FE FE2 B 301 1555 1555 2.09 LINK NE2 HIS B 215 FE FE2 B 301 1555 1555 2.25 LINK OE1 GLU B 266 FE FE2 B 301 1555 1555 2.00 LINK FE FE2 B 301 O HOH B 303 1555 1555 2.20 LINK FE FE2 B 301 O HOH B 304 1555 1555 2.27 CISPEP 1 SER A 2 ILE A 3 0 13.60 SITE 1 AC1 6 HIS A 145 HIS A 215 TYR A 256 GLU A 266 SITE 2 AC1 6 HOH A 302 HOH A 303 SITE 1 AC2 5 HIS B 145 HIS B 215 GLU B 266 HOH B 303 SITE 2 AC2 5 HOH B 304 SITE 1 AC3 6 PRO B 55 GLY B 56 LYS B 89 ARG B 106 SITE 2 AC3 6 HOH B 318 HOH B 630 CRYST1 123.737 123.737 106.784 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008082 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009365 0.00000