HEADER TRANSFERASE/RNA 19-FEB-09 2ZZM TITLE THE COMPLEX STRUCTURE OF ATRM5 AND TRNALEU COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ0883; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (84-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHESIZED IN VITRO WITH THE RECOMBINANT RNA SOURCE 13 POLYMERASE OF T7 PHAGE KEYWDS PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GOTO-ITO,T.ITO,S.YOKOYAMA REVDAT 4 15-NOV-23 2ZZM 1 REMARK LINK REVDAT 3 01-NOV-23 2ZZM 1 REMARK REVDAT 2 03-NOV-09 2ZZM 1 JRNL REVDAT 1 15-SEP-09 2ZZM 0 JRNL AUTH S.GOTO-ITO,T.ITO,M.KURATANI,Y.BESSHO,S.YOKOYAMA JRNL TITL TERTIARY STRUCTURE CHECKPOINT AT ANTICODON LOOP MODIFICATION JRNL TITL 2 IN TRNA FUNCTIONAL MATURATION JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1109 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19749755 JRNL DOI 10.1038/NSMB.1653 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1219642.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3076 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE : 0.5100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2724 REMARK 3 NUCLEIC ACID ATOMS : 1793 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.99000 REMARK 3 B22 (A**2) : -14.78000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.410 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.870 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.480 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.950; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 73.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_MLZ.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ADOMET.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_MLZ.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ADOMET.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ZZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000028625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YX1 AND 1WZ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 175MM MG(HCOO)2, 13% PEG 3350, 25MM REMARK 280 KCL, 35MM NA-HEPES, PH 7.2, SITTING DROP, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.19950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.19950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 335 REMARK 465 LYS A 336 REMARK 465 A B 73 REMARK 465 C B 74 REMARK 465 C B 75 REMARK 465 A B 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C B 17 N1 - C1' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 G B 23 C5' - C4' - C3' ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 97.58 -67.39 REMARK 500 ASN A 55 35.12 -74.01 REMARK 500 PHE A 58 148.39 -170.79 REMARK 500 LEU A 60 52.75 -90.08 REMARK 500 ASP A 62 58.62 -100.42 REMARK 500 LYS A 63 171.70 -58.18 REMARK 500 LEU A 65 -35.85 -29.05 REMARK 500 GLU A 66 -0.43 82.07 REMARK 500 GLU A 67 -126.50 149.53 REMARK 500 LYS A 69 142.67 -30.15 REMARK 500 PRO A 129 97.19 -64.93 REMARK 500 ILE A 173 -2.83 -59.81 REMARK 500 ARG A 188 -75.76 -56.97 REMARK 500 ILE A 189 -29.84 -37.38 REMARK 500 LYS A 191 38.21 -88.60 REMARK 500 LYS A 192 -31.23 -137.28 REMARK 500 SER A 194 52.12 -105.07 REMARK 500 LEU A 195 -18.38 39.98 REMARK 500 ALA A 216 170.37 -44.82 REMARK 500 GLU A 254 66.23 -106.40 REMARK 500 MET A 264 78.82 -119.78 REMARK 500 LEU A 266 54.40 -161.45 REMARK 500 PRO A 267 -26.82 -38.27 REMARK 500 LYS A 272 7.44 -63.44 REMARK 500 ASP A 297 -96.34 -43.70 REMARK 500 LYS A 298 -30.47 -39.13 REMARK 500 LYS A 305 37.53 -66.00 REMARK 500 LYS A 306 -33.86 -138.07 REMARK 500 CYS A 307 -164.40 -177.21 REMARK 500 VAL A 311 82.20 -58.12 REMARK 500 MLZ A 318 149.17 -170.51 REMARK 500 PRO A 322 99.43 -46.01 REMARK 500 ARG A 323 -64.29 105.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G B 5 0.06 SIDE CHAIN REMARK 500 G B 15 0.08 SIDE CHAIN REMARK 500 C B 17 0.07 SIDE CHAIN REMARK 500 G B 30 0.05 SIDE CHAIN REMARK 500 A B 35 0.06 SIDE CHAIN REMARK 500 G B 37 0.06 SIDE CHAIN REMARK 500 G B 47A 0.09 SIDE CHAIN REMARK 500 G B 47D 0.06 SIDE CHAIN REMARK 500 U B 47I 0.06 SIDE CHAIN REMARK 500 C B 56 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 519 DISTANCE = 6.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 59 OP1 REMARK 620 2 HOH B 610 O 81.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZZN RELATED DB: PDB DBREF 2ZZM A 1 336 UNP Q58293 Y883_METJA 1 336 DBREF1 2ZZM B 1 76 GB L77117 DBREF2 2ZZM B 6626255 637982 638069 SEQRES 1 A 336 MET PRO LEU CYS LEU LYS ILE ASN LYS LYS HIS GLY GLU SEQRES 2 A 336 GLN THR ARG ARG ILE LEU ILE GLU ASN ASN LEU LEU ASN SEQRES 3 A 336 LYS ASP TYR LYS ILE THR SER GLU GLY ASN TYR LEU TYR SEQRES 4 A 336 LEU PRO ILE LYS ASP VAL ASP GLU ASP ILE LEU LYS SER SEQRES 5 A 336 ILE LEU ASN ILE GLU PHE GLU LEU VAL ASP LYS GLU LEU SEQRES 6 A 336 GLU GLU LYS LYS ILE ILE LYS LYS PRO SER PHE ARG GLU SEQRES 7 A 336 ILE ILE SER MLZ MLZ TYR ARG LYS GLU ILE ASP GLU GLY SEQRES 8 A 336 LEU ILE SER LEU SER TYR ASP VAL VAL GLY ASP LEU VAL SEQRES 9 A 336 ILE LEU GLN ILE SER ASP GLU VAL ASP GLU LYS ILE ARG SEQRES 10 A 336 LYS GLU ILE GLY GLU LEU ALA TYR LYS LEU ILE PRO CYS SEQRES 11 A 336 LYS GLY VAL PHE ARG ARG LYS SER GLU VAL LYS GLY GLU SEQRES 12 A 336 PHE ARG VAL ARG GLU LEU GLU HIS LEU ALA GLY GLU ASN SEQRES 13 A 336 ARG THR LEU THR ILE HIS LYS GLU ASN GLY TYR ARG LEU SEQRES 14 A 336 TRP VAL ASP ILE ALA LYS VAL TYR PHE SER PRO ARG LEU SEQRES 15 A 336 GLY GLY GLU ARG ALA ARG ILE MET LYS LYS VAL SER LEU SEQRES 16 A 336 ASN ASP VAL VAL VAL ASP MET PHE ALA GLY VAL GLY PRO SEQRES 17 A 336 PHE SER ILE ALA CYS LYS ASN ALA LYS LYS ILE TYR ALA SEQRES 18 A 336 ILE ASP ILE ASN PRO HIS ALA ILE GLU LEU LEU MLZ LYS SEQRES 19 A 336 ASN ILE LYS LEU ASN LYS LEU GLU HIS LYS ILE ILE PRO SEQRES 20 A 336 ILE LEU SER ASP VAL ARG GLU VAL ASP VAL LYS GLY ASN SEQRES 21 A 336 ARG VAL ILE MET ASN LEU PRO LYS PHE ALA HIS LYS PHE SEQRES 22 A 336 ILE ASP LYS ALA LEU ASP ILE VAL GLU GLU GLY GLY VAL SEQRES 23 A 336 ILE HIS TYR TYR THR ILE GLY LYS ASP PHE ASP LYS ALA SEQRES 24 A 336 ILE LYS LEU PHE GLU LYS LYS CYS ASP CYS GLU VAL LEU SEQRES 25 A 336 GLU LYS ARG ILE VAL MLZ SER TYR ALA PRO ARG GLU TYR SEQRES 26 A 336 ILE LEU ALA LEU ASP PHE LYS ILE ASN LYS LYS SEQRES 1 B 88 G C A G G G G U C G C C A SEQRES 2 B 88 A G C C U G G C C A A A G SEQRES 3 B 88 G C G C U G G G C C U A G SEQRES 4 B 88 G A C C C A G U C C C G U SEQRES 5 B 88 A G G G G U U C C A G G G SEQRES 6 B 88 U U C A A A U C C C U G C SEQRES 7 B 88 C C C U G C A C C A MODRES 2ZZM MLZ A 82 LYS N-METHYL-LYSINE MODRES 2ZZM MLZ A 83 LYS N-METHYL-LYSINE MODRES 2ZZM MLZ A 233 LYS N-METHYL-LYSINE MODRES 2ZZM MLZ A 318 LYS N-METHYL-LYSINE HET MLZ A 82 10 HET MLZ A 83 10 HET MLZ A 233 10 HET MLZ A 318 10 HET SAM A 401 27 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HETNAM MLZ N-METHYL-LYSINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MLZ 4(C7 H16 N2 O2) FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 MG 5(MG 2+) FORMUL 9 HOH *39(H2 O) HELIX 1 1 HIS A 11 ASN A 22 1 12 HELIX 2 2 ASP A 46 LEU A 54 1 9 HELIX 3 3 SER A 75 TYR A 84 1 10 HELIX 4 4 TYR A 84 GLU A 90 1 7 HELIX 5 5 ASP A 113 ILE A 128 1 16 HELIX 6 6 SER A 179 ARG A 181 5 3 HELIX 7 7 LEU A 182 LYS A 191 1 10 HELIX 8 8 GLY A 207 ALA A 212 1 6 HELIX 9 9 ASN A 225 ASN A 239 1 15 HELIX 10 10 ASP A 251 VAL A 255 5 5 HELIX 11 11 ALA A 270 LYS A 272 5 3 HELIX 12 12 PHE A 273 ILE A 280 1 8 HELIX 13 13 PHE A 296 LYS A 305 1 10 SHEET 1 A 2 CYS A 4 ASN A 8 0 SHEET 2 A 2 TYR A 37 PRO A 41 -1 O LEU A 38 N ILE A 7 SHEET 1 B 4 ASP A 98 VAL A 100 0 SHEET 2 B 4 LEU A 103 LEU A 106 -1 O LEU A 103 N VAL A 100 SHEET 3 B 4 GLY A 132 ARG A 136 1 O PHE A 134 N LEU A 106 SHEET 4 B 4 LEU A 149 GLY A 154 -1 O LEU A 152 N VAL A 133 SHEET 1 C 2 LEU A 159 GLU A 164 0 SHEET 2 C 2 TYR A 167 ASP A 172 -1 O LEU A 169 N HIS A 162 SHEET 1 D 7 ILE A 245 LEU A 249 0 SHEET 2 D 7 LYS A 218 ASP A 223 1 N ILE A 219 O ILE A 246 SHEET 3 D 7 VAL A 198 ASP A 201 1 N VAL A 199 O TYR A 220 SHEET 4 D 7 GLY A 259 MET A 264 1 O ILE A 263 N VAL A 200 SHEET 5 D 7 VAL A 281 GLY A 293 1 O VAL A 286 N ASN A 260 SHEET 6 D 7 TYR A 325 ILE A 333 -1 O LEU A 327 N THR A 291 SHEET 7 D 7 CYS A 309 SER A 319 -1 N VAL A 317 O ILE A 326 LINK C SER A 81 N MLZ A 82 1555 1555 1.33 LINK C MLZ A 82 N MLZ A 83 1555 1555 1.33 LINK C MLZ A 83 N TYR A 84 1555 1555 1.33 LINK C LEU A 232 N MLZ A 233 1555 1555 1.33 LINK C MLZ A 233 N LYS A 234 1555 1555 1.33 LINK C VAL A 317 N MLZ A 318 1555 1555 1.34 LINK C MLZ A 318 N SER A 319 1555 1555 1.33 LINK OP1 A B 59 MG MG B 101 1555 1555 2.24 LINK MG MG B 101 O HOH B 610 1555 1555 2.45 LINK MG MG B 103 O HOH B 612 1555 1555 2.49 SITE 1 AC1 21 GLU A 143 PHE A 144 TYR A 177 PHE A 178 SITE 2 AC1 21 SER A 179 LEU A 182 ARG A 186 PHE A 203 SITE 3 AC1 21 PRO A 208 PHE A 209 ASP A 223 ILE A 224 SITE 4 AC1 21 ASN A 225 SER A 250 ASP A 251 VAL A 252 SITE 5 AC1 21 ASN A 265 LEU A 266 HOH A 506 HOH A 518 SITE 6 AC1 21 G B 37 SITE 1 AC2 3 C B 20A A B 59 HOH B 610 SITE 1 AC3 2 G B 47A A B 47C SITE 1 AC4 1 HOH B 612 SITE 1 AC5 1 U B 34 CRYST1 78.399 138.390 61.654 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016220 0.00000