HEADER TRANSPORT PROTEIN 27-FEB-09 2ZZV TITLE CRYSTAL STRUCTURE OF A PERIPLASMIC SUBSTRATE BINDING PROTEIN IN TITLE 2 COMPLEX WITH CALCIUM AND LACTATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, SOLUTE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 GENE: TTHA0766; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PERIPLASMIC SUBSTRATE BINDING PROTEIN, CALCIUM, LACTATE, TRAP KEYWDS 2 TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.AKIYAMA,K.TAKEDA,K.MIKI REVDAT 3 15-NOV-23 2ZZV 1 REMARK LINK ATOM REVDAT 2 22-SEP-09 2ZZV 1 JRNL REVDAT 1 11-AUG-09 2ZZV 0 JRNL AUTH N.AKIYAMA,K.TAKEDA,K.MIKI JRNL TITL CRYSTAL STRUCTURE OF A PERIPLASMIC SUBSTRATE-BINDING PROTEIN JRNL TITL 2 IN COMPLEX WITH CALCIUM LACTATE JRNL REF J.MOL.BIOL. V. 392 559 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19631222 JRNL DOI 10.1016/J.JMB.2009.07.043 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2600957.520 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 146494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7322 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6457 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 333 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.25000 REMARK 3 B22 (A**2) : -3.07000 REMARK 3 B33 (A**2) : -2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.900 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.800 ; 4.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 48.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LAC_PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LAC_TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2ZZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000028634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.5% 2-PROPANOL, 0.086M SODIUM CITRATE REMARK 280 (PH5.5), 18% PEG 4000, 4.5% GLYCEROL, 0.9% N-OCTYL-BETA-D- REMARK 280 GLUCOPYRANOSIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.52600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.19450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.66750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.19450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.52600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.66750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 ARG A 11 REMARK 465 ARG A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 ALA A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 ALA A 31 REMARK 465 MET B 1001 REMARK 465 LYS B 1002 REMARK 465 ARG B 1003 REMARK 465 VAL B 1004 REMARK 465 SER B 1005 REMARK 465 ARG B 1006 REMARK 465 ARG B 1007 REMARK 465 ALA B 1008 REMARK 465 PHE B 1009 REMARK 465 LEU B 1010 REMARK 465 ARG B 1011 REMARK 465 ARG B 1012 REMARK 465 LEU B 1013 REMARK 465 GLY B 1014 REMARK 465 VAL B 1015 REMARK 465 GLY B 1016 REMARK 465 VAL B 1017 REMARK 465 ALA B 1018 REMARK 465 ALA B 1019 REMARK 465 THR B 1020 REMARK 465 ALA B 1021 REMARK 465 ALA B 1022 REMARK 465 PHE B 1023 REMARK 465 SER B 1024 REMARK 465 PRO B 1025 REMARK 465 LEU B 1026 REMARK 465 ALA B 1027 REMARK 465 VAL B 1028 REMARK 465 ALA B 1029 REMARK 465 GLN B 1030 REMARK 465 ALA B 1031 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 ARG B1299 CG CD NE CZ NH1 NH2 REMARK 470 GLN B1300 CG CD OE1 NE2 REMARK 470 GLU B1354 CG CD OE1 OE2 REMARK 470 LYS B1357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2301 O HOH A 2911 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 155 -76.28 -153.70 REMARK 500 PRO A 180 38.03 -85.80 REMARK 500 PHE A 217 -102.80 -145.96 REMARK 500 VAL A 218 -143.69 -119.19 REMARK 500 HIS B1155 -76.48 -153.75 REMARK 500 ASP B1156 171.52 179.87 REMARK 500 PRO B1180 37.04 -88.04 REMARK 500 PHE B1217 -104.53 -145.60 REMARK 500 VAL B1218 -143.20 -117.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 158 OD1 REMARK 620 2 ASP A 216 OD1 90.3 REMARK 620 3 ASP A 216 OD2 142.0 51.9 REMARK 620 4 PHE A 217 O 82.2 82.2 94.8 REMARK 620 5 GLN A 247 OE1 77.7 86.0 93.7 156.6 REMARK 620 6 LAC A 401 O 141.9 126.8 75.9 93.7 109.6 REMARK 620 7 LAC A 401 OHN 76.3 163.6 141.6 86.5 100.1 65.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LAC B 402 O REMARK 620 2 LAC B 402 OHN 66.4 REMARK 620 3 ASN B1158 OD1 141.3 74.9 REMARK 620 4 ASP B1216 OD1 77.4 143.8 141.1 REMARK 620 5 ASP B1216 OD2 127.0 162.0 90.5 50.9 REMARK 620 6 PHE B1217 O 91.5 84.8 83.3 94.9 83.0 REMARK 620 7 GLN B1247 OE1 109.8 99.2 77.1 94.3 87.5 158.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZZW RELATED DB: PDB REMARK 900 RELATED ID: 2ZZX RELATED DB: PDB DBREF 2ZZV A 1 361 UNP Q5SK82 Q5SK82_THET8 1 361 DBREF 2ZZV B 1001 1361 UNP Q5SK82 Q5SK82_THET8 1 361 SEQRES 1 A 361 MET LYS ARG VAL SER ARG ARG ALA PHE LEU ARG ARG LEU SEQRES 2 A 361 GLY VAL GLY VAL ALA ALA THR ALA ALA PHE SER PRO LEU SEQRES 3 A 361 ALA VAL ALA GLN ALA ARG ARG TYR ARG TRP ARG ILE GLN SEQRES 4 A 361 THR ALA TRP ASP ALA GLY THR VAL GLY TYR SER LEU PHE SEQRES 5 A 361 GLN LYS PHE THR GLU ARG VAL LYS GLU LEU THR ASP GLY SEQRES 6 A 361 GLN LEU GLU VAL GLN PRO PHE PRO ALA GLY ALA VAL VAL SEQRES 7 A 361 GLY THR PHE ASP MET PHE ASP ALA VAL LYS THR GLY VAL SEQRES 8 A 361 LEU ASP GLY MET ASN PRO PHE THR LEU TYR TRP ALA GLY SEQRES 9 A 361 ARG MET PRO VAL THR ALA PHE LEU SER SER TYR ALA LEU SEQRES 10 A 361 GLY LEU ASP ARG PRO ASP GLN TRP GLU THR TRP PHE TYR SEQRES 11 A 361 SER LEU GLY GLY LEU ASP ILE ALA ARG ARG ALA PHE ALA SEQRES 12 A 361 GLU GLN GLY LEU PHE TYR VAL GLY PRO VAL GLN HIS ASP SEQRES 13 A 361 LEU ASN ILE ILE HIS SER LYS LYS PRO ILE ARG ARG PHE SEQRES 14 A 361 GLU ASP PHE LYS GLY VAL LYS LEU ARG VAL PRO GLY GLY SEQRES 15 A 361 MET ILE ALA GLU VAL PHE ALA ALA ALA GLY ALA SER THR SEQRES 16 A 361 VAL LEU LEU PRO GLY GLY GLU VAL TYR PRO ALA LEU GLU SEQRES 17 A 361 ARG GLY VAL ILE ASP ALA ALA ASP PHE VAL GLY PRO ALA SEQRES 18 A 361 VAL ASN TYR ASN LEU GLY PHE HIS GLN VAL ALA LYS TYR SEQRES 19 A 361 ILE ILE MET GLY PRO PRO GLU THR PRO ALA ILE HIS GLN SEQRES 20 A 361 PRO VAL ASP LEU MET ASP PHE THR ILE ASN LEU ASN ARG SEQRES 21 A 361 TRP ARG SER LEU PRO LYS PRO LEU GLN GLU ARG PHE ILE SEQRES 22 A 361 ALA ALA VAL HIS GLU TYR SER TRP ILE HIS TYR ALA GLY SEQRES 23 A 361 ILE GLN LYS ALA ASN LEU GLU ALA TRP PRO LYS TYR ARG SEQRES 24 A 361 GLN ALA GLY VAL GLU VAL ILE ARG LEU SER ASN GLU ASP SEQRES 25 A 361 VAL ARG LYS PHE ARG ARG LEU ALA ILE PRO ILE TRP PHE SEQRES 26 A 361 LYS TRP ALA LYS MET ASP LYS TYR SER ARG GLU ALA PHE SEQRES 27 A 361 ALA SER GLN LEU GLU TYR MET LYS GLY ILE GLY TYR VAL SEQRES 28 A 361 THR ASP GLU GLU LEU LYS GLY LEU SER LEU SEQRES 1 B 361 MET LYS ARG VAL SER ARG ARG ALA PHE LEU ARG ARG LEU SEQRES 2 B 361 GLY VAL GLY VAL ALA ALA THR ALA ALA PHE SER PRO LEU SEQRES 3 B 361 ALA VAL ALA GLN ALA ARG ARG TYR ARG TRP ARG ILE GLN SEQRES 4 B 361 THR ALA TRP ASP ALA GLY THR VAL GLY TYR SER LEU PHE SEQRES 5 B 361 GLN LYS PHE THR GLU ARG VAL LYS GLU LEU THR ASP GLY SEQRES 6 B 361 GLN LEU GLU VAL GLN PRO PHE PRO ALA GLY ALA VAL VAL SEQRES 7 B 361 GLY THR PHE ASP MET PHE ASP ALA VAL LYS THR GLY VAL SEQRES 8 B 361 LEU ASP GLY MET ASN PRO PHE THR LEU TYR TRP ALA GLY SEQRES 9 B 361 ARG MET PRO VAL THR ALA PHE LEU SER SER TYR ALA LEU SEQRES 10 B 361 GLY LEU ASP ARG PRO ASP GLN TRP GLU THR TRP PHE TYR SEQRES 11 B 361 SER LEU GLY GLY LEU ASP ILE ALA ARG ARG ALA PHE ALA SEQRES 12 B 361 GLU GLN GLY LEU PHE TYR VAL GLY PRO VAL GLN HIS ASP SEQRES 13 B 361 LEU ASN ILE ILE HIS SER LYS LYS PRO ILE ARG ARG PHE SEQRES 14 B 361 GLU ASP PHE LYS GLY VAL LYS LEU ARG VAL PRO GLY GLY SEQRES 15 B 361 MET ILE ALA GLU VAL PHE ALA ALA ALA GLY ALA SER THR SEQRES 16 B 361 VAL LEU LEU PRO GLY GLY GLU VAL TYR PRO ALA LEU GLU SEQRES 17 B 361 ARG GLY VAL ILE ASP ALA ALA ASP PHE VAL GLY PRO ALA SEQRES 18 B 361 VAL ASN TYR ASN LEU GLY PHE HIS GLN VAL ALA LYS TYR SEQRES 19 B 361 ILE ILE MET GLY PRO PRO GLU THR PRO ALA ILE HIS GLN SEQRES 20 B 361 PRO VAL ASP LEU MET ASP PHE THR ILE ASN LEU ASN ARG SEQRES 21 B 361 TRP ARG SER LEU PRO LYS PRO LEU GLN GLU ARG PHE ILE SEQRES 22 B 361 ALA ALA VAL HIS GLU TYR SER TRP ILE HIS TYR ALA GLY SEQRES 23 B 361 ILE GLN LYS ALA ASN LEU GLU ALA TRP PRO LYS TYR ARG SEQRES 24 B 361 GLN ALA GLY VAL GLU VAL ILE ARG LEU SER ASN GLU ASP SEQRES 25 B 361 VAL ARG LYS PHE ARG ARG LEU ALA ILE PRO ILE TRP PHE SEQRES 26 B 361 LYS TRP ALA LYS MET ASP LYS TYR SER ARG GLU ALA PHE SEQRES 27 B 361 ALA SER GLN LEU GLU TYR MET LYS GLY ILE GLY TYR VAL SEQRES 28 B 361 THR ASP GLU GLU LEU LYS GLY LEU SER LEU HET LAC A 401 6 HET CA A 501 1 HET LAC B 402 6 HET CA B 502 1 HETNAM LAC LACTIC ACID HETNAM CA CALCIUM ION FORMUL 3 LAC 2(C3 H6 O3) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *940(H2 O) HELIX 1 1 THR A 46 THR A 63 1 18 HELIX 2 2 GLY A 79 PHE A 81 5 3 HELIX 3 3 ASP A 82 THR A 89 1 8 HELIX 4 4 PHE A 98 ALA A 103 5 6 HELIX 5 5 MET A 106 LEU A 112 5 7 HELIX 6 6 ARG A 121 SER A 131 1 11 HELIX 7 7 GLY A 133 GLN A 145 1 13 HELIX 8 8 ARG A 168 LYS A 173 5 6 HELIX 9 9 GLY A 181 ALA A 191 1 11 HELIX 10 10 PRO A 199 GLY A 201 5 3 HELIX 11 11 GLU A 202 ARG A 209 1 8 HELIX 12 12 GLY A 219 LEU A 226 1 8 HELIX 13 13 GLY A 227 ALA A 232 1 6 HELIX 14 14 LEU A 258 LEU A 264 1 7 HELIX 15 15 PRO A 265 ALA A 301 1 37 HELIX 16 16 SER A 309 LYS A 329 1 21 HELIX 17 17 ASP A 331 ILE A 348 1 18 HELIX 18 18 ASP A 353 LYS A 357 5 5 HELIX 19 19 THR B 1046 THR B 1063 1 18 HELIX 20 20 GLY B 1079 PHE B 1081 5 3 HELIX 21 21 ASP B 1082 THR B 1089 1 8 HELIX 22 22 PHE B 1098 ALA B 1103 5 6 HELIX 23 23 MET B 1106 LEU B 1112 5 7 HELIX 24 24 ARG B 1121 SER B 1131 1 11 HELIX 25 25 GLY B 1133 GLU B 1144 1 12 HELIX 26 26 ARG B 1168 LYS B 1173 5 6 HELIX 27 27 GLY B 1181 ALA B 1191 1 11 HELIX 28 28 PRO B 1199 GLY B 1201 5 3 HELIX 29 29 GLU B 1202 ARG B 1209 1 8 HELIX 30 30 GLY B 1219 LEU B 1226 1 8 HELIX 31 31 GLY B 1227 ALA B 1232 1 6 HELIX 32 32 LEU B 1258 LEU B 1264 1 7 HELIX 33 33 PRO B 1265 ALA B 1301 1 37 HELIX 34 34 SER B 1309 LYS B 1329 1 21 HELIX 35 35 ASP B 1331 ILE B 1348 1 18 HELIX 36 36 ASP B 1353 LYS B 1357 5 5 SHEET 1 A 5 LEU A 67 PHE A 72 0 SHEET 2 A 5 TYR A 34 THR A 40 1 N TRP A 36 O GLN A 70 SHEET 3 A 5 GLY A 94 ASN A 96 1 O ASN A 96 N GLN A 39 SHEET 4 A 5 MET A 252 ASN A 257 -1 O THR A 255 N MET A 95 SHEET 5 A 5 LEU A 147 VAL A 153 -1 N PHE A 148 O ILE A 256 SHEET 1 B 6 SER A 194 VAL A 196 0 SHEET 2 B 6 LYS A 176 ARG A 178 1 N LEU A 177 O SER A 194 SHEET 3 B 6 ALA A 214 ASP A 216 1 O ASP A 216 N ARG A 178 SHEET 4 B 6 ILE A 160 SER A 162 -1 N HIS A 161 O ALA A 215 SHEET 5 B 6 TYR A 234 MET A 237 -1 O ILE A 236 N ILE A 160 SHEET 6 B 6 GLU A 304 ARG A 307 1 O ILE A 306 N ILE A 235 SHEET 1 C 5 LEU B1067 PHE B1072 0 SHEET 2 C 5 TYR B1034 THR B1040 1 N TRP B1036 O GLN B1070 SHEET 3 C 5 GLY B1094 ASN B1096 1 O ASN B1096 N GLN B1039 SHEET 4 C 5 MET B1252 ASN B1257 -1 O THR B1255 N MET B1095 SHEET 5 C 5 LEU B1147 VAL B1153 -1 N PHE B1148 O ILE B1256 SHEET 1 D 6 SER B1194 VAL B1196 0 SHEET 2 D 6 LYS B1176 ARG B1178 1 N LEU B1177 O SER B1194 SHEET 3 D 6 ALA B1214 ASP B1216 1 O ASP B1216 N ARG B1178 SHEET 4 D 6 ILE B1160 SER B1162 -1 N HIS B1161 O ALA B1215 SHEET 5 D 6 TYR B1234 MET B1237 -1 O ILE B1236 N ILE B1160 SHEET 6 D 6 GLU B1304 ARG B1307 1 O ILE B1306 N ILE B1235 LINK OD1 ASN A 158 CA CA A 501 1555 1555 2.32 LINK OD1 ASP A 216 CA CA A 501 1555 1555 2.56 LINK OD2 ASP A 216 CA CA A 501 1555 1555 2.40 LINK O PHE A 217 CA CA A 501 1555 1555 2.31 LINK OE1 GLN A 247 CA CA A 501 1555 1555 2.38 LINK O LAC A 401 CA CA A 501 1555 1555 2.37 LINK OHN LAC A 401 CA CA A 501 1555 1555 2.36 LINK O LAC B 402 CA CA B 502 1555 1555 2.35 LINK OHN LAC B 402 CA CA B 502 1555 1555 2.42 LINK CA CA B 502 OD1 ASN B1158 1555 1555 2.31 LINK CA CA B 502 OD1 ASP B1216 1555 1555 2.40 LINK CA CA B 502 OD2 ASP B1216 1555 1555 2.63 LINK CA CA B 502 O PHE B1217 1555 1555 2.31 LINK CA CA B 502 OE1 GLN B1247 1555 1555 2.33 SITE 1 AC1 11 PHE A 98 LEU A 100 TYR A 101 ASN A 158 SITE 2 AC1 11 ARG A 178 PRO A 180 ASP A 216 PHE A 217 SITE 3 AC1 11 GLN A 247 ASP A 250 CA A 501 SITE 1 AC2 5 ASN A 158 ASP A 216 PHE A 217 GLN A 247 SITE 2 AC2 5 LAC A 401 SITE 1 AC3 10 CA B 502 PHE B1098 TYR B1101 ASN B1158 SITE 2 AC3 10 ARG B1178 PRO B1180 ASP B1216 PHE B1217 SITE 3 AC3 10 GLN B1247 ASP B1250 SITE 1 AC4 5 LAC B 402 ASN B1158 ASP B1216 PHE B1217 SITE 2 AC4 5 GLN B1247 CRYST1 75.052 77.335 136.389 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007332 0.00000