HEADER MEMBRANE PROTEIN, METAL TRANSPORT 15-JUN-05 2A02 TITLE SOLUTION NMR STRUCTURE OF THE PERIPLASMIC SIGNALING DOMAIN OF THE TITLE 2 OUTER MEMBRANE IRON TRANSPORTER PUPA FROM PSEUDOMONAS PUTIDA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC-PSEUDOBACTIN 358 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: PUPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 KEYWDS MEMBRANE PROTEIN, METAL TRANSPORT, PROTEIN NMR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.D.FERGUSON,C.A.AMEZCUA,Y.CHELLIAH,M.K.ROSEN,J.DEISENHOFER REVDAT 5 22-MAY-24 2A02 1 REMARK REVDAT 4 09-MAR-22 2A02 1 REMARK SEQADV REVDAT 3 24-FEB-09 2A02 1 VERSN REVDAT 2 16-JAN-07 2A02 1 JRNL REVDAT 1 26-SEP-06 2A02 0 JRNL AUTH A.D.FERGUSON,C.A.AMEZCUA,N.M.HALABI,Y.CHELLIAH,M.K.ROSEN, JRNL AUTH 2 R.RANGANATHAN,J.DEISENHOFER JRNL TITL SIGNAL TRANSDUCTION PATHWAY OF TONB-DEPENDENT TRANSPORTERS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 2 513 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17197416 JRNL DOI 10.1073/PNAS.0609887104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.0, ARIA 1.2 REMARK 3 AUTHORS : DELAGLIO, F. ET AL (NMRPIPE), NILGES, M. AND REMARK 3 O'DONOGHUE, S.I. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A02 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033323. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRVIEW 5.2.2, ARIA REMARK 210 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 11 -150.02 -96.71 REMARK 500 1 LYS A 80 82.32 -158.03 REMARK 500 2 GLN A 2 78.66 57.93 REMARK 500 2 ALA A 10 30.20 -96.95 REMARK 500 2 GLN A 11 -151.13 -98.15 REMARK 500 2 ALA A 42 106.09 -57.50 REMARK 500 2 GLN A 58 92.50 -53.83 REMARK 500 2 SER A 76 83.11 -150.52 REMARK 500 3 GLN A 11 -149.11 -104.61 REMARK 500 3 ALA A 78 -71.86 179.62 REMARK 500 3 LYS A 80 71.99 -119.42 REMARK 500 4 GLN A 11 -144.62 -109.51 REMARK 500 4 ALA A 42 100.55 -59.49 REMARK 500 4 SER A 76 -164.48 58.86 REMARK 500 4 ALA A 79 -81.98 -72.54 REMARK 500 4 LYS A 80 -78.91 -129.95 REMARK 500 5 GLN A 11 -158.85 -106.53 REMARK 500 5 ALA A 42 101.37 -57.57 REMARK 500 5 SER A 76 -155.86 -166.70 REMARK 500 5 ALA A 77 77.38 63.80 REMARK 500 5 ALA A 78 56.98 -97.52 REMARK 500 5 ALA A 79 -102.93 58.13 REMARK 500 6 GLN A 11 -157.42 -114.60 REMARK 500 6 LYS A 80 44.99 -86.83 REMARK 500 6 ASP A 81 -87.83 62.93 REMARK 500 7 GLN A 11 -155.56 -100.46 REMARK 500 7 ALA A 79 37.84 -81.11 REMARK 500 7 ASP A 81 97.40 60.48 REMARK 500 8 GLN A 11 -156.76 -95.17 REMARK 500 8 ALA A 42 105.38 -59.19 REMARK 500 8 ALA A 77 -86.49 59.80 REMARK 500 8 ALA A 78 19.13 -155.00 REMARK 500 9 GLN A 2 76.46 56.99 REMARK 500 9 ALA A 42 106.16 -57.40 REMARK 500 9 GLN A 58 101.01 -50.19 REMARK 500 10 GLN A 11 -150.90 -99.43 REMARK 500 10 ALA A 42 108.68 -56.82 REMARK 500 11 GLN A 11 -148.08 -99.62 REMARK 500 11 ALA A 42 101.99 -56.30 REMARK 500 11 GLN A 58 104.10 -49.13 REMARK 500 11 ALA A 79 -151.50 56.62 REMARK 500 12 GLN A 11 -157.60 -97.32 REMARK 500 12 ALA A 42 101.86 -54.98 REMARK 500 12 ALA A 77 72.94 47.53 REMARK 500 12 LYS A 80 144.10 72.09 REMARK 500 13 GLN A 11 -157.79 -98.80 REMARK 500 13 ALA A 42 103.25 -57.08 REMARK 500 13 ALA A 77 24.92 -179.93 REMARK 500 13 LYS A 80 54.39 -170.57 REMARK 500 14 GLN A 11 -155.21 -93.80 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZZV RELATED DB: PDB REMARK 900 HOMOLOG PROTEIN DBREF 2A02 A 2 82 UNP P25184 PUPA_PSEPU 48 128 SEQADV 2A02 SER A 1 UNP P25184 CLONING ARTIFACT SEQRES 1 A 82 SER GLN GLU TRP THR LEU ASP ILE PRO ALA GLN SER MET SEQRES 2 A 82 ASN SER ALA LEU GLN ALA LEU ALA LYS GLN THR ASP THR SEQRES 3 A 82 GLN LEU LEU TYR SER PRO GLU ASP ILE GLY GLY LEU ARG SEQRES 4 A 82 SER SER ALA LEU LYS GLY ARG HIS ASP LEU GLN SER SER SEQRES 5 A 82 LEU ARG ILE LEU LEU GLN GLY THR GLY LEU ARG TYR GLN SEQRES 6 A 82 ILE ASP GLY ASN THR VAL THR VAL THR ALA SER ALA ALA SEQRES 7 A 82 ALA LYS ASP GLY HELIX 1 1 SER A 12 ASP A 25 1 14 HELIX 2 2 ASP A 48 GLN A 58 1 11 SHEET 1 A 2 TRP A 4 THR A 5 0 SHEET 2 A 2 ARG A 46 HIS A 47 -1 O HIS A 47 N TRP A 4 SHEET 1 B 3 GLN A 27 LEU A 29 0 SHEET 2 B 3 THR A 70 THR A 74 1 O VAL A 71 N LEU A 29 SHEET 3 B 3 ARG A 63 ASP A 67 -1 N ASP A 67 O THR A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1