HEADER TRANSFERASE 16-JUN-05 2A0K TITLE CRYSTAL STRUCTURE OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE FROM TITLE 2 TRYPANOSOMA BRUCEI AT 1.8 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TB05.30H13.400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21STAR(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 SYSTEM; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS SGPP, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE, STRUCTURAL GENOMICS OF KEYWDS 3 PATHOGENIC PROTOZOA CONSORTIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BOSCH,M.A.ROBIEN,W.G.J.HOL,STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA CONSORTIUM (SGPP) REVDAT 6 09-OCT-24 2A0K 1 REMARK REVDAT 5 20-OCT-21 2A0K 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2A0K 1 VERSN REVDAT 3 24-FEB-09 2A0K 1 VERSN REVDAT 2 17-APR-07 2A0K 1 JRNL REVDAT 1 26-JUL-05 2A0K 0 JRNL AUTH J.BOSCH,M.A.ROBIEN,C.MEHLIN,E.BONI,A.RIECHERS,F.S.BUCKNER, JRNL AUTH 2 W.C.VAN VOORHIS,P.J.MYLER,E.A.WORTHEY,G.DETITTA,J.R.LUFT, JRNL AUTH 3 A.LAURICELLA,S.GULDE,L.A.ANDERSON,O.KALYUZHNIY,H.M.NEELY, JRNL AUTH 4 J.ROSS,T.N.EARNEST,M.SOLTIS,L.SCHOENFELD,F.ZUCKER, JRNL AUTH 5 E.A.MERRITT,E.FAN,C.L.VERLINDE,W.G.J.HOL JRNL TITL USING FRAGMENT COCKTAIL CRYSTALLOGRAPHY TO ASSIST INHIBITOR JRNL TITL 2 DESIGN OF TRYPANOSOMA BRUCEI NUCLEOSIDE JRNL TITL 3 2-DEOXYRIBOSYLTRANSFERASE. JRNL REF J.MED.CHEM. V. 49 5939 2006 JRNL REFN ISSN 0022-2623 JRNL PMID 17004709 JRNL DOI 10.1021/JM060429M REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 32301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2606 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3514 ; 0.953 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.306 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;32.914 ;23.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;10.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2006 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1282 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1784 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.098 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1628 ; 1.567 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2540 ; 1.897 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 2.629 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 3.782 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 160 2 REMARK 3 1 B 3 B 160 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 632 ; 0.01 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 631 ; 0.22 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 632 ; 0.06 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 631 ; 0.40 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7590 16.0200 11.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.0093 REMARK 3 T33: -0.0012 T12: 0.0367 REMARK 3 T13: 0.0018 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 5.8911 L22: 1.3306 REMARK 3 L33: 0.7180 L12: -2.1281 REMARK 3 L13: -1.8946 L23: 0.8762 REMARK 3 S TENSOR REMARK 3 S11: 0.2423 S12: 0.1404 S13: 0.0780 REMARK 3 S21: -0.1410 S22: -0.1833 S23: -0.0803 REMARK 3 S31: 0.0218 S32: -0.0254 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8350 12.8810 13.6810 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: -0.0834 REMARK 3 T33: 0.0493 T12: -0.0003 REMARK 3 T13: -0.0522 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.8027 L22: 0.7324 REMARK 3 L33: 4.4402 L12: -1.0686 REMARK 3 L13: -1.1963 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.0009 S13: -0.3709 REMARK 3 S21: 0.0563 S22: 0.0030 S23: 0.0535 REMARK 3 S31: 0.6266 S32: 0.0226 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2560 25.9680 18.4750 REMARK 3 T TENSOR REMARK 3 T11: -0.0046 T22: -0.0142 REMARK 3 T33: -0.0002 T12: 0.0043 REMARK 3 T13: 0.0042 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.2398 L22: 0.4795 REMARK 3 L33: 1.3757 L12: -0.1045 REMARK 3 L13: -0.2819 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.0014 S13: -0.0541 REMARK 3 S21: 0.0220 S22: 0.0276 S23: 0.0025 REMARK 3 S31: 0.0953 S32: 0.0794 S33: -0.0660 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5530 41.3810 14.1120 REMARK 3 T TENSOR REMARK 3 T11: -0.0386 T22: 0.0148 REMARK 3 T33: 0.0061 T12: 0.0507 REMARK 3 T13: 0.0078 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.0455 L22: 4.0622 REMARK 3 L33: 2.3352 L12: -1.6381 REMARK 3 L13: -1.6828 L23: 1.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.1244 S13: -0.1044 REMARK 3 S21: -0.0729 S22: -0.0384 S23: 0.3225 REMARK 3 S31: -0.2238 S32: -0.3524 S33: -0.0349 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8700 30.4460 6.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.0007 REMARK 3 T33: -0.0130 T12: 0.0128 REMARK 3 T13: 0.0127 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5266 L22: 0.2476 REMARK 3 L33: 0.8224 L12: -0.0225 REMARK 3 L13: 0.3071 L23: -0.1591 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.0637 S13: -0.0287 REMARK 3 S21: -0.0999 S22: -0.0156 S23: 0.0403 REMARK 3 S31: 0.0245 S32: 0.0224 S33: -0.0260 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7920 48.3600 32.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0004 REMARK 3 T33: 0.0027 T12: -0.0335 REMARK 3 T13: 0.0270 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.9495 L22: 1.0189 REMARK 3 L33: 0.5329 L12: 1.1572 REMARK 3 L13: 1.2586 L23: 0.5164 REMARK 3 S TENSOR REMARK 3 S11: 0.1753 S12: -0.1162 S13: -0.0376 REMARK 3 S21: 0.1041 S22: -0.1342 S23: -0.0633 REMARK 3 S31: -0.0511 S32: -0.0329 S33: -0.0411 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8610 51.4870 29.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: -0.0845 REMARK 3 T33: 0.0415 T12: 0.0136 REMARK 3 T13: 0.0613 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.1783 L22: 1.2873 REMARK 3 L33: 4.2993 L12: 1.6030 REMARK 3 L13: 1.1791 L23: 0.2399 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.0143 S13: 0.4208 REMARK 3 S21: -0.1053 S22: 0.0172 S23: 0.0853 REMARK 3 S31: -0.6221 S32: -0.0079 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2560 38.4160 25.2050 REMARK 3 T TENSOR REMARK 3 T11: -0.0027 T22: -0.0149 REMARK 3 T33: 0.0027 T12: -0.0095 REMARK 3 T13: 0.0231 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2820 L22: 0.3236 REMARK 3 L33: 1.1745 L12: 0.0538 REMARK 3 L13: 0.2327 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.0075 S13: 0.0143 REMARK 3 S21: 0.0140 S22: 0.0346 S23: -0.0038 REMARK 3 S31: -0.1429 S32: 0.0450 S33: -0.0473 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5750 22.9540 29.6010 REMARK 3 T TENSOR REMARK 3 T11: -0.0481 T22: 0.0093 REMARK 3 T33: -0.0065 T12: -0.0471 REMARK 3 T13: 0.0213 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 2.1368 L22: 5.3470 REMARK 3 L33: 3.0083 L12: 2.1707 REMARK 3 L13: 2.1428 L23: 1.7775 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: -0.0754 S13: 0.0738 REMARK 3 S21: 0.1313 S22: -0.0069 S23: 0.2878 REMARK 3 S31: 0.2319 S32: -0.3211 S33: -0.0741 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8920 33.9300 37.3120 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: 0.0045 REMARK 3 T33: -0.0099 T12: -0.0116 REMARK 3 T13: 0.0093 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.4779 L22: 0.2943 REMARK 3 L33: 0.9886 L12: 0.0747 REMARK 3 L13: -0.3544 L23: -0.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.0838 S12: -0.0648 S13: 0.0238 REMARK 3 S21: 0.1430 S22: -0.0631 S23: 0.0317 REMARK 3 S31: 0.0127 S32: 0.0168 S33: -0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG MME 2000, 0.2 AMMONIUM REMARK 280 SULFATE, 0.1 SODIUM ACETATE TRIHYDRATE PH 4.6 , VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.00200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.57800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.00200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.57800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 161 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 134 126.35 -39.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 463 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 464 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TBRU015777AAA RELATED DB: TARGETDB DBREF 2A0K A 9 161 UNP Q57VC7 Q57VC7_9TRYP 1 153 DBREF 2A0K B 9 161 UNP Q57VC7 Q57VC7_9TRYP 1 153 SEQADV 2A0K MSE A 1 UNP Q57VC7 CLONING ARTIFACT SEQADV 2A0K ALA A 2 UNP Q57VC7 CLONING ARTIFACT SEQADV 2A0K HIS A 3 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS A 4 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS A 5 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS A 6 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS A 7 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS A 8 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K MSE A 9 UNP Q57VC7 MET 1 MODIFIED RESIDUE SEQADV 2A0K MSE A 24 UNP Q57VC7 MET 16 MODIFIED RESIDUE SEQADV 2A0K MSE A 42 UNP Q57VC7 MET 34 MODIFIED RESIDUE SEQADV 2A0K GLU A 53 UNP Q57VC7 GLY 45 ENGINEERED MUTATION SEQADV 2A0K MSE A 64 UNP Q57VC7 MET 56 MODIFIED RESIDUE SEQADV 2A0K CYS A 93 UNP Q57VC7 TYR 85 ENGINEERED MUTATION SEQADV 2A0K MSE A 100 UNP Q57VC7 MET 92 MODIFIED RESIDUE SEQADV 2A0K MSE A 111 UNP Q57VC7 MET 103 MODIFIED RESIDUE SEQADV 2A0K GLY A 118 UNP Q57VC7 GLU 110 ENGINEERED MUTATION SEQADV 2A0K MSE A 136 UNP Q57VC7 MET 128 MODIFIED RESIDUE SEQADV 2A0K MSE B 1 UNP Q57VC7 CLONING ARTIFACT SEQADV 2A0K ALA B 2 UNP Q57VC7 CLONING ARTIFACT SEQADV 2A0K HIS B 3 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS B 4 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS B 5 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS B 6 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS B 7 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K HIS B 8 UNP Q57VC7 EXPRESSION TAG SEQADV 2A0K MSE B 9 UNP Q57VC7 MET 1 MODIFIED RESIDUE SEQADV 2A0K MSE B 24 UNP Q57VC7 MET 16 MODIFIED RESIDUE SEQADV 2A0K MSE B 42 UNP Q57VC7 MET 34 MODIFIED RESIDUE SEQADV 2A0K GLU B 53 UNP Q57VC7 GLY 45 ENGINEERED MUTATION SEQADV 2A0K MSE B 64 UNP Q57VC7 MET 56 MODIFIED RESIDUE SEQADV 2A0K CYS B 93 UNP Q57VC7 TYR 85 ENGINEERED MUTATION SEQADV 2A0K MSE B 100 UNP Q57VC7 MET 92 MODIFIED RESIDUE SEQADV 2A0K MSE B 111 UNP Q57VC7 MET 103 MODIFIED RESIDUE SEQADV 2A0K GLY B 118 UNP Q57VC7 GLU 110 ENGINEERED MUTATION SEQADV 2A0K MSE B 136 UNP Q57VC7 MET 128 MODIFIED RESIDUE SEQRES 1 A 161 MSE ALA HIS HIS HIS HIS HIS HIS MSE ARG LYS ILE TYR SEQRES 2 A 161 ILE ALA GLY PRO ALA VAL PHE ASN PRO ASP MSE GLY ALA SEQRES 3 A 161 SER TYR TYR ASN LYS VAL ARG GLU LEU LEU LYS LYS GLU SEQRES 4 A 161 ASN VAL MSE PRO LEU ILE PRO THR ASP ASN GLU ALA THR SEQRES 5 A 161 GLU ALA LEU ASP ILE ARG GLN LYS ASN ILE GLN MSE ILE SEQRES 6 A 161 LYS ASP CYS ASP ALA VAL ILE ALA ASP LEU SER PRO PHE SEQRES 7 A 161 ARG GLY HIS GLU PRO ASP CYS GLY THR ALA PHE GLU VAL SEQRES 8 A 161 GLY CYS ALA ALA ALA LEU ASN LYS MSE VAL LEU THR PHE SEQRES 9 A 161 THR SER ASP ARG ARG ASN MSE ARG GLU LYS TYR GLY SER SEQRES 10 A 161 GLY VAL ASP LYS ASP ASN LEU ARG VAL GLU GLY PHE GLY SEQRES 11 A 161 LEU PRO PHE ASN LEU MSE LEU TYR ASP GLY VAL GLU VAL SEQRES 12 A 161 PHE ASP SER PHE GLU SER ALA PHE LYS TYR PHE LEU ALA SEQRES 13 A 161 ASN PHE PRO SER LYS SEQRES 1 B 161 MSE ALA HIS HIS HIS HIS HIS HIS MSE ARG LYS ILE TYR SEQRES 2 B 161 ILE ALA GLY PRO ALA VAL PHE ASN PRO ASP MSE GLY ALA SEQRES 3 B 161 SER TYR TYR ASN LYS VAL ARG GLU LEU LEU LYS LYS GLU SEQRES 4 B 161 ASN VAL MSE PRO LEU ILE PRO THR ASP ASN GLU ALA THR SEQRES 5 B 161 GLU ALA LEU ASP ILE ARG GLN LYS ASN ILE GLN MSE ILE SEQRES 6 B 161 LYS ASP CYS ASP ALA VAL ILE ALA ASP LEU SER PRO PHE SEQRES 7 B 161 ARG GLY HIS GLU PRO ASP CYS GLY THR ALA PHE GLU VAL SEQRES 8 B 161 GLY CYS ALA ALA ALA LEU ASN LYS MSE VAL LEU THR PHE SEQRES 9 B 161 THR SER ASP ARG ARG ASN MSE ARG GLU LYS TYR GLY SER SEQRES 10 B 161 GLY VAL ASP LYS ASP ASN LEU ARG VAL GLU GLY PHE GLY SEQRES 11 B 161 LEU PRO PHE ASN LEU MSE LEU TYR ASP GLY VAL GLU VAL SEQRES 12 B 161 PHE ASP SER PHE GLU SER ALA PHE LYS TYR PHE LEU ALA SEQRES 13 B 161 ASN PHE PRO SER LYS MODRES 2A0K MSE A 9 MET SELENOMETHIONINE MODRES 2A0K MSE A 24 MET SELENOMETHIONINE MODRES 2A0K MSE A 42 MET SELENOMETHIONINE MODRES 2A0K MSE A 64 MET SELENOMETHIONINE MODRES 2A0K MSE A 100 MET SELENOMETHIONINE MODRES 2A0K MSE A 111 MET SELENOMETHIONINE MODRES 2A0K MSE A 136 MET SELENOMETHIONINE MODRES 2A0K MSE B 9 MET SELENOMETHIONINE MODRES 2A0K MSE B 24 MET SELENOMETHIONINE MODRES 2A0K MSE B 42 MET SELENOMETHIONINE MODRES 2A0K MSE B 64 MET SELENOMETHIONINE MODRES 2A0K MSE B 100 MET SELENOMETHIONINE MODRES 2A0K MSE B 111 MET SELENOMETHIONINE MODRES 2A0K MSE B 136 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 24 8 HET MSE A 42 8 HET MSE A 64 8 HET MSE A 100 8 HET MSE A 111 8 HET MSE A 136 8 HET MSE B 9 8 HET MSE B 24 8 HET MSE B 42 8 HET MSE B 64 8 HET MSE B 100 8 HET MSE B 111 8 HET MSE B 136 8 HET SO4 A 463 5 HET GOL A 462 6 HET SO4 B 461 5 HET GOL B 464 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *416(H2 O) HELIX 1 1 GLY A 16 ASN A 21 5 6 HELIX 2 2 GLY A 25 LYS A 38 1 14 HELIX 3 3 GLU A 53 CYS A 68 1 16 HELIX 4 4 ASP A 84 LEU A 97 1 14 HELIX 5 5 ASN A 110 GLY A 116 1 7 HELIX 6 6 ASN A 134 TYR A 138 5 5 HELIX 7 7 SER A 146 PHE A 158 1 13 HELIX 8 8 GLY B 16 ASN B 21 5 6 HELIX 9 9 GLY B 25 LYS B 38 1 14 HELIX 10 10 GLU B 53 CYS B 68 1 16 HELIX 11 11 ASP B 84 LEU B 97 1 14 HELIX 12 12 ASN B 110 GLY B 116 1 7 HELIX 13 13 ASN B 134 TYR B 138 5 5 HELIX 14 14 SER B 146 PHE B 158 1 13 SHEET 1 A 4 MSE A 42 LEU A 44 0 SHEET 2 A 4 LYS A 11 ALA A 15 1 N ILE A 12 O LEU A 44 SHEET 3 A 4 ALA A 70 ASP A 74 1 O ALA A 70 N TYR A 13 SHEET 4 A 4 MSE A 100 PHE A 104 1 O LEU A 102 N VAL A 71 SHEET 1 B 4 MSE B 42 LEU B 44 0 SHEET 2 B 4 LYS B 11 ALA B 15 1 N ILE B 12 O LEU B 44 SHEET 3 B 4 ALA B 70 ASP B 74 1 O ASP B 74 N ALA B 15 SHEET 4 B 4 MSE B 100 PHE B 104 1 O LEU B 102 N VAL B 71 LINK C HIS A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N ARG A 10 1555 1555 1.33 LINK C ASP A 23 N MSE A 24 1555 1555 1.33 LINK C MSE A 24 N GLY A 25 1555 1555 1.33 LINK C VAL A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N PRO A 43 1555 1555 1.35 LINK C GLN A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ILE A 65 1555 1555 1.33 LINK C LYS A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N VAL A 101 1555 1555 1.33 LINK C ASN A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N ARG A 112 1555 1555 1.33 LINK C LEU A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N LEU A 137 1555 1555 1.33 LINK C HIS B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N ARG B 10 1555 1555 1.33 LINK C ASP B 23 N MSE B 24 1555 1555 1.34 LINK C MSE B 24 N GLY B 25 1555 1555 1.33 LINK C VAL B 41 N MSE B 42 1555 1555 1.34 LINK C MSE B 42 N PRO B 43 1555 1555 1.35 LINK C GLN B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N ILE B 65 1555 1555 1.33 LINK C LYS B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N VAL B 101 1555 1555 1.33 LINK C ASN B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N ARG B 112 1555 1555 1.33 LINK C LEU B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N LEU B 137 1555 1555 1.33 SITE 1 AC1 7 HIS B 6 HIS B 8 MSE B 9 LYS B 11 SITE 2 AC1 7 ARG B 112 ARG B 125 HOH B 618 SITE 1 AC2 8 HIS A 6 HIS A 8 MSE A 9 LYS A 11 SITE 2 AC2 8 ARG A 112 HOH A 568 HOH A 642 HOH A 651 SITE 1 AC3 10 ALA A 15 GLY A 16 VAL A 19 PHE A 20 SITE 2 AC3 10 ASP A 84 GLY A 86 THR A 87 GLU A 90 SITE 3 AC3 10 HOH A 611 ASN B 134 SITE 1 AC4 8 ASN A 134 ALA B 15 GLY B 16 PHE B 20 SITE 2 AC4 8 ASP B 84 GLY B 86 GLU B 90 HOH B 558 CRYST1 60.004 75.156 87.365 90.00 89.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016666 0.000000 -0.000010 0.00000 SCALE2 0.000000 0.013306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011446 0.00000