HEADER LIGASE 21-JUN-05 2A25 TITLE CRYSTAL STRUCTURE OF SIAH1 SBD BOUND TO THE PEPTIDE EKPAAVVAPITTG FROM TITLE 2 SIP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN LIGASE SIAH1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBSTRATE BINDING DOMAIN (RESIDUES 90-282); COMPND 5 SYNONYM: SEVEN IN ABSENTIA HOMOLOG 1, SIAH-1, SIAH-1A; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CALCYCLIN-BINDING PROTEIN PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CACYBP, HCACYBP, SIAH-INTERACTING PROTEIN, S100A6-BINDING COMPND 12 PROTEIN, PNAS-107; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SIAH BINDING MOTIF SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIAH1, HUMSIAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 14 OF THE PEPTIDE CAN BE NATURALLY FOUND IN HOMO SAPIENS (HUMAN) KEYWDS PROTEIN-PEPTIDE COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SANTELLI,M.LEONE,C.LI,T.FUKUSHIMA,N.E.PREECE,A.J.OLSON,K.R.ELY, AUTHOR 2 J.C.REED,M.PELLECCHIA,R.C.LIDDINGTON,S.MATSUZAWA REVDAT 5 23-AUG-23 2A25 1 REMARK REVDAT 4 13-JUL-11 2A25 1 VERSN REVDAT 3 24-FEB-09 2A25 1 VERSN REVDAT 2 18-OCT-05 2A25 1 JRNL REVDAT 1 09-AUG-05 2A25 0 JRNL AUTH E.SANTELLI,M.LEONE,C.LI,T.FUKUSHIMA,N.E.PREECE,A.J.OLSON, JRNL AUTH 2 K.R.ELY,J.C.REED,M.PELLECCHIA,R.C.LIDDINGTON,S.MATSUZAWA JRNL TITL STRUCTURAL ANALYSIS OF SIAH1-SIAH-INTERACTING PROTEIN JRNL TITL 2 INTERACTIONS AND INSIGHTS INTO THE ASSEMBLY OF AN E3 LIGASE JRNL TITL 3 MULTIPROTEIN COMPLEX JRNL REF J.BIOL.CHEM. V. 280 34278 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16085652 JRNL DOI 10.1074/JBC.M506707200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1249 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1683 ; 1.554 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 6.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 927 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 524 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.239 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 771 ; 1.084 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1241 ; 1.960 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 478 ; 3.420 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 442 ; 5.144 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 282 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 RESIDUE RANGE : B 59 B 67 REMARK 3 RESIDUE RANGE : A 602 A 691 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6082 38.1424 8.8587 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0020 REMARK 3 T33: 0.1279 T12: 0.0131 REMARK 3 T13: 0.0107 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 8.0570 L22: 3.1063 REMARK 3 L33: 6.0939 L12: 0.5473 REMARK 3 L13: 3.4563 L23: -0.6595 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.2343 S13: -0.6125 REMARK 3 S21: -0.2312 S22: 0.1068 S23: -0.0205 REMARK 3 S31: 0.1452 S32: -0.3148 S33: -0.1012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1K2F CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM DIHYDROGEN PHOSPAHTE, DI REMARK 280 -POTASSIUM HYDROGEN PHOSPHATE, DITHIOTHREITHOL, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.20700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.20700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.81750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.88050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.81750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.88050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.20700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.81750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.88050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.20700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.81750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.88050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: 1-X, Y, 1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.63500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.20700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 90 REMARK 465 ALA A 91 REMARK 465 ASN A 92 REMARK 465 SER A 93 REMARK 465 VAL A 94 REMARK 465 LEU A 95 REMARK 465 PHE A 96 REMARK 465 PRO A 97 REMARK 465 CYS A 98 REMARK 465 LYS A 99 REMARK 465 TYR A 100 REMARK 465 ALA A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 CYS A 105 REMARK 465 GLU A 106 REMARK 465 ILE A 107 REMARK 465 THR A 108 REMARK 465 LEU A 109 REMARK 465 PRO A 110 REMARK 465 HIS A 111 REMARK 465 THR A 112 REMARK 465 GLU A 113 REMARK 465 LYS A 114 REMARK 465 ALA A 115 REMARK 465 ASP A 116 REMARK 465 HIS A 117 REMARK 465 GLU A 118 REMARK 465 GLU A 119 REMARK 465 LEU A 120 REMARK 465 CYS A 121 REMARK 465 GLU A 122 REMARK 465 PHE A 123 REMARK 465 ARG A 124 REMARK 465 GLY A 132 REMARK 465 ALA A 133 REMARK 465 LEU A 172 REMARK 465 PRO A 173 REMARK 465 GLY A 174 REMARK 465 ALA A 175 REMARK 465 GLU A 197 REMARK 465 LYS A 198 REMARK 465 TYR A 199 REMARK 465 ASP A 200 REMARK 465 GLY A 201 REMARK 465 HIS A 202 REMARK 465 GLU B 58 REMARK 465 THR B 68 REMARK 465 THR B 69 REMARK 465 GLY B 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 629 O HOH A 684 1.84 REMARK 500 O HOH A 626 O HOH A 666 1.99 REMARK 500 O HOH A 605 O HOH A 652 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 177 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 170 5.51 -68.93 REMARK 500 HIS A 230 102.16 -58.59 REMARK 500 CYS A 256 -174.82 -178.85 REMARK 500 GLU A 269 -104.92 -69.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 135 SG 111.1 REMARK 620 3 HIS A 147 NE2 109.6 113.0 REMARK 620 4 HIS A 152 NE2 100.7 120.0 101.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K2F RELATED DB: PDB REMARK 900 RELATED ID: 2A26 RELATED DB: PDB DBREF 2A25 A 90 282 UNP Q8IUQ4 SIAH1_HUMAN 90 282 DBREF 2A25 B 58 70 UNP Q9HB71 CYBP_HUMAN 58 70 SEQRES 1 A 193 VAL ALA ASN SER VAL LEU PHE PRO CYS LYS TYR ALA SER SEQRES 2 A 193 SER GLY CYS GLU ILE THR LEU PRO HIS THR GLU LYS ALA SEQRES 3 A 193 ASP HIS GLU GLU LEU CYS GLU PHE ARG PRO TYR SER CYS SEQRES 4 A 193 PRO CYS PRO GLY ALA SER CYS LYS TRP GLN GLY SER LEU SEQRES 5 A 193 ASP ALA VAL MET PRO HIS LEU MET HIS GLN HIS LYS SER SEQRES 6 A 193 ILE THR THR LEU GLN GLY GLU ASP ILE VAL PHE LEU ALA SEQRES 7 A 193 THR ASP ILE ASN LEU PRO GLY ALA VAL ASP TRP VAL MET SEQRES 8 A 193 MET GLN SER CYS PHE GLY PHE HIS PHE MET LEU VAL LEU SEQRES 9 A 193 GLU LYS GLN GLU LYS TYR ASP GLY HIS GLN GLN PHE PHE SEQRES 10 A 193 ALA ILE VAL GLN LEU ILE GLY THR ARG LYS GLN ALA GLU SEQRES 11 A 193 ASN PHE ALA TYR ARG LEU GLU LEU ASN GLY HIS ARG ARG SEQRES 12 A 193 ARG LEU THR TRP GLU ALA THR PRO ARG SER ILE HIS GLU SEQRES 13 A 193 GLY ILE ALA THR ALA ILE MET ASN SER ASP CYS LEU VAL SEQRES 14 A 193 PHE ASP THR SER ILE ALA GLN LEU PHE ALA GLU ASN GLY SEQRES 15 A 193 ASN LEU GLY ILE ASN VAL THR ILE SER MET CYS SEQRES 1 B 13 GLU LYS PRO ALA ALA VAL VAL ALA PRO ILE THR THR GLY HET ZN A 601 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *100(H2 O) HELIX 1 1 ALA A 143 HIS A 152 1 10 HELIX 2 2 THR A 214 GLU A 219 1 6 HELIX 3 3 ILE A 247 ASN A 253 1 7 HELIX 4 4 THR A 261 ALA A 268 1 8 SHEET 1 A 2 TYR A 126 SER A 127 0 SHEET 2 A 2 GLN A 138 GLY A 139 -1 O GLY A 139 N TYR A 126 SHEET 1 B 5 THR A 157 GLN A 159 0 SHEET 2 B 5 ASP A 177 CYS A 184 1 O SER A 183 N LEU A 158 SHEET 3 B 5 PHE A 187 LYS A 195 -1 O LEU A 191 N MET A 180 SHEET 4 B 5 GLN A 204 LEU A 211 -1 O PHE A 206 N GLU A 194 SHEET 5 B 5 ARG A 241 SER A 242 1 O ARG A 241 N LEU A 211 SHEET 1 C 5 THR A 157 GLN A 159 0 SHEET 2 C 5 ASP A 177 CYS A 184 1 O SER A 183 N LEU A 158 SHEET 3 C 5 PHE A 187 LYS A 195 -1 O LEU A 191 N MET A 180 SHEET 4 C 5 GLN A 204 LEU A 211 -1 O PHE A 206 N GLU A 194 SHEET 5 C 5 LEU A 257 ASP A 260 -1 O PHE A 259 N PHE A 205 SHEET 1 D 5 ARG A 232 ALA A 238 0 SHEET 2 D 5 PHE A 221 GLY A 229 -1 N LEU A 227 O LEU A 234 SHEET 3 D 5 ASN A 272 MET A 281 -1 O ASN A 276 N GLU A 226 SHEET 4 D 5 ASP A 162 THR A 168 -1 N PHE A 165 O ILE A 275 SHEET 5 D 5 ALA B 61 VAL B 64 1 O ALA B 62 N LEU A 166 LINK SG CYS A 128 ZN ZN A 601 1555 1555 2.28 LINK SG CYS A 135 ZN ZN A 601 1555 1555 2.29 LINK NE2 HIS A 147 ZN ZN A 601 1555 1555 2.05 LINK NE2 HIS A 152 ZN ZN A 601 1555 1555 2.08 SITE 1 AC1 4 CYS A 128 CYS A 135 HIS A 147 HIS A 152 CRYST1 47.635 107.761 78.414 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012753 0.00000