HEADER PROTEIN TRANSPORT 22-JUN-05 2A2F TITLE CRYSTAL STRUCTURE OF SEC15 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOCYST COMPLEX COMPONENT SEC15; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: SEC15 C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SEC15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS ALL HELICAL STRUCTURE, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,S.Q.MEHTA,F.PICHAUD,H.J.BELLEN,F.A.QUIOCHO REVDAT 5 14-FEB-24 2A2F 1 SEQADV REVDAT 4 13-JUL-11 2A2F 1 VERSN REVDAT 3 24-FEB-09 2A2F 1 VERSN REVDAT 2 18-OCT-05 2A2F 1 JRNL REVDAT 1 13-SEP-05 2A2F 0 JRNL AUTH S.WU,S.Q.MEHTA,F.PICHAUD,H.J.BELLEN,F.A.QUIOCHO JRNL TITL SEC15 INTERACTS WITH RAB11 VIA A NOVEL DOMAIN AND AFFECTS JRNL TITL 2 RAB11 LOCALIZATION IN VIVO. JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 879 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 16155582 JRNL DOI 10.1038/NSMB987 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.260 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-03; NULL REMARK 200 TEMPERATURE (KELVIN) : 298; NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : ALS; NULL REMARK 200 BEAMLINE : 8.2.1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958,0.97949,0.96308; NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111); REMARK 200 NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, AMMONIUM PHOSPHATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.25000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.95000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.25000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.95000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.50000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 185.25000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 VAL X 2 REMARK 465 ASN X 64 REMARK 465 ALA X 65 REMARK 465 PRO X 66 REMARK 465 PHE X 67 REMARK 465 SER X 169 REMARK 465 VAL X 170 REMARK 465 SER X 171 REMARK 465 GLN X 172 REMARK 465 THR X 173 REMARK 465 PRO X 174 REMARK 465 SER X 175 REMARK 465 LEU X 210 REMARK 465 VAL X 211 REMARK 465 GLU X 212 REMARK 465 PRO X 213 REMARK 465 GLU X 265 REMARK 465 ASP X 266 REMARK 465 VAL X 267 REMARK 465 LYS X 268 REMARK 465 GLN X 269 REMARK 465 ILE X 270 REMARK 465 HIS X 320 REMARK 465 HIS X 321 REMARK 465 HIS X 322 REMARK 465 HIS X 323 REMARK 465 HIS X 324 REMARK 465 HIS X 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS X 58 CG ND1 CD2 CE1 NE2 REMARK 470 LYS X 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS X 298 N GLU X 299 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER X 271 C THR X 272 N -0.182 REMARK 500 THR X 272 C GLY X 273 N -0.297 REMARK 500 LEU X 275 C THR X 276 N -0.206 REMARK 500 LEU X 297 CB LEU X 297 CG 0.242 REMARK 500 LYS X 298 C GLU X 299 N -0.304 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER X 271 O - C - N ANGL. DEV. = -21.3 DEGREES REMARK 500 THR X 272 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU X 275 CA - C - O ANGL. DEV. = -13.5 DEGREES REMARK 500 LEU X 275 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 GLY X 296 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU X 297 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 LYS X 298 CA - C - N ANGL. DEV. = 36.1 DEGREES REMARK 500 LYS X 298 O - C - N ANGL. DEV. = -32.3 DEGREES REMARK 500 GLU X 299 C - N - CA ANGL. DEV. = 36.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 44 105.26 173.74 REMARK 500 GLU X 46 16.86 -65.43 REMARK 500 GLU X 47 -47.82 -136.80 REMARK 500 PRO X 56 94.19 -63.87 REMARK 500 SER X 59 175.55 -51.15 REMARK 500 LYS X 69 89.98 61.49 REMARK 500 LYS X 70 -78.70 -124.28 REMARK 500 MET X 108 -71.21 -47.38 REMARK 500 ARG X 182 7.98 -57.53 REMARK 500 TRP X 208 -157.83 -112.07 REMARK 500 LEU X 239 69.59 -118.56 REMARK 500 THR X 272 -45.21 -29.72 REMARK 500 GLU X 292 66.03 61.52 REMARK 500 LYS X 298 108.05 -33.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER X 271 THR X 272 -149.83 REMARK 500 LYS X 298 GLU X 299 69.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER X 271 -27.29 REMARK 500 GLY X 296 13.20 REMARK 500 LEU X 297 -14.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 2A2F X 2 319 UNP Q9VDE6 SEC15_DROME 382 699 SEQADV 2A2F MET X 1 UNP Q9VDE6 CLONING ARTIFACT SEQADV 2A2F HIS X 320 UNP Q9VDE6 EXPRESSION TAG SEQADV 2A2F HIS X 321 UNP Q9VDE6 EXPRESSION TAG SEQADV 2A2F HIS X 322 UNP Q9VDE6 EXPRESSION TAG SEQADV 2A2F HIS X 323 UNP Q9VDE6 EXPRESSION TAG SEQADV 2A2F HIS X 324 UNP Q9VDE6 EXPRESSION TAG SEQADV 2A2F HIS X 325 UNP Q9VDE6 EXPRESSION TAG SEQRES 1 X 325 MET VAL ASN ILE LEU TRP GLU LEU LEU HIS ASN MET ARG SEQRES 2 X 325 ASP HIS TYR ASN GLU VAL LEU LEU GLN ARG TRP VAL HIS SEQRES 3 X 325 VAL PHE ARG GLU ILE LEU ASP LYS GLU GLN PHE LEU PRO SEQRES 4 X 325 MET VAL VAL GLN ASN THR GLU GLU TYR GLU CYS ILE ILE SEQRES 5 X 325 GLU ARG PHE PRO PHE HIS SER GLU GLN LEU GLU ASN ALA SEQRES 6 X 325 PRO PHE PRO LYS LYS PHE PRO PHE SER ARG MET VAL PRO SEQRES 7 X 325 GLU VAL TYR HIS GLN ALA LYS GLU PHE MET TYR ALA CYS SEQRES 8 X 325 MET LYS PHE ALA GLU GLU LEU THR LEU SER PRO ASN GLU SEQRES 9 X 325 VAL ALA ALA MET VAL ARG LYS ALA ALA ASN LEU LEU LEU SEQRES 10 X 325 THR ARG SER PHE SER GLY CYS LEU SER VAL VAL PHE ARG SEQRES 11 X 325 GLN PRO SER ILE THR LEU THR GLN LEU ILE GLN ILE ILE SEQRES 12 X 325 ILE ASP THR GLN TYR LEU GLU LYS ALA GLY PRO PHE LEU SEQRES 13 X 325 ASP GLU PHE VAL CYS HIS MET THR ASN THR GLU ARG SER SEQRES 14 X 325 VAL SER GLN THR PRO SER ALA MET PHE HIS VAL ALA ARG SEQRES 15 X 325 GLN ASP ALA GLU LYS GLN VAL GLY LEU ARG ILE CYS SER SEQRES 16 X 325 LYS ILE ASP GLU PHE PHE GLU LEU SER ALA TYR ASP TRP SEQRES 17 X 325 LEU LEU VAL GLU PRO PRO GLY ILE ALA SER ALA PHE ILE SEQRES 18 X 325 THR ASP MET ILE SER TYR LEU LYS SER THR PHE ASP SER SEQRES 19 X 325 PHE ALA PHE LYS LEU PRO HIS ILE ALA GLN ALA ALA CYS SEQRES 20 X 325 ARG ARG THR PHE GLU HIS ILE ALA GLU LYS ILE TYR SER SEQRES 21 X 325 ILE MET TYR ASP GLU ASP VAL LYS GLN ILE SER THR GLY SEQRES 22 X 325 ALA LEU THR GLN ILE ASN LEU ASP LEU MET GLN CYS GLU SEQRES 23 X 325 PHE PHE ALA ALA SER GLU PRO VAL PRO GLY LEU LYS GLU SEQRES 24 X 325 GLY GLU LEU SER LYS TYR PHE LEU ARG ASN ARG GLN LEU SEQRES 25 X 325 LEU ASP LEU LEU ILE LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *87(H2 O) HELIX 1 1 ASN X 3 GLN X 36 1 34 HELIX 2 2 ASN X 44 GLU X 53 1 10 HELIX 3 3 ARG X 75 LEU X 98 1 24 HELIX 4 4 SER X 101 ARG X 130 1 30 HELIX 5 5 THR X 135 LYS X 151 1 17 HELIX 6 6 ALA X 152 ASN X 165 1 14 HELIX 7 7 GLN X 183 GLU X 202 1 20 HELIX 8 8 SER X 218 SER X 234 1 17 HELIX 9 9 LEU X 239 TYR X 263 1 25 HELIX 10 10 ALA X 274 ALA X 290 1 17 HELIX 11 11 LEU X 302 TYR X 305 5 4 HELIX 12 12 PHE X 306 LEU X 318 1 13 CRYST1 80.500 93.900 123.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008097 0.00000