HEADER HYDROLASE 25-JUN-05 2A3L TITLE X-RAY STRUCTURE OF ADENOSINE 5'-MONOPHOSPHATE DEAMINASE FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH COFORMYCIN 5'-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMP DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G38280; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: P2BAC KEYWDS ATAMPD, AT2G38280, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, COFORMYCIN KEYWDS 2 5'-PHOSPHATE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, CESG, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.HAN,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 10 03-APR-24 2A3L 1 REMARK REVDAT 9 14-FEB-24 2A3L 1 REMARK REVDAT 8 20-OCT-21 2A3L 1 REMARK SEQADV LINK REVDAT 7 24-JUL-19 2A3L 1 REMARK REVDAT 6 11-OCT-17 2A3L 1 REMARK REVDAT 5 13-JUL-11 2A3L 1 VERSN REVDAT 4 24-FEB-09 2A3L 1 VERSN REVDAT 3 01-AUG-06 2A3L 1 JRNL REVDAT 2 13-SEP-05 2A3L 1 JRNL REVDAT 1 19-JUL-05 2A3L 0 JRNL AUTH B.W.HAN,C.A.BINGMAN,D.K.MAHNKE,R.M.BANNEN,S.Y.BEDNAREK, JRNL AUTH 2 R.L.SABINA,G.N.PHILLIPS JRNL TITL MEMBRANE ASSOCIATION, MECHANISM OF ACTION, AND STRUCTURE OF JRNL TITL 2 ARABIDOPSIS EMBRYONIC FACTOR 1 (FAC1). JRNL REF J.BIOL.CHEM. V. 281 14939 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16543243 JRNL DOI 10.1074/JBC.M513009200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.W.HAN,C.A.BINGHAM,D.K.MAHNKE,R.L.SABINA,G.N.PHILLIPS JR. REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF ADENOSINE 5'-MONOPHOSPHATE DEAMINASE (AMPD) FROM REMARK 1 TITL 3 ARABIDOPSIS THALIANA IN COMPLEX WITH COFORMYCIN 5'-PHOSPHATE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 740 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511144 REMARK 2 REMARK 2 RESOLUTION. 3.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 273226.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 15038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2094 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 116 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5050 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.91400 REMARK 3 B22 (A**2) : 10.91400 REMARK 3 B33 (A**2) : -21.82800 REMARK 3 B12 (A**2) : -1.40700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.61 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.480 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 58.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CF5.PAR REMARK 3 PARAMETER FILE 3 : PO4.PAR REMARK 3 PARAMETER FILE 4 : ZN.PAR REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CF5.TOP REMARK 3 TOPOLOGY FILE 4 : PO4.TOP REMARK 3 TOPOLOGY FILE 5 : ZN.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI (220) REMARK 200 DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16001 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5790 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.922 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: RABBIT AMPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML PROTEIN, 0.40 M MONOAMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, 0.10 M TRI-SODIUM CITRATE, 10% (V/V) REMARK 280 ETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.83600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.41800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.83600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.41800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.83600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.41800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.83600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.41800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -69.41800 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 92380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -288.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.66250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -113.73079 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -69.41800 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -65.66250 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -113.73079 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -69.41800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 SER A 140 REMARK 465 PRO A 141 REMARK 465 LYS A 142 REMARK 465 SER A 143 REMARK 465 PRO A 144 REMARK 465 VAL A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 ALA A 148 REMARK 465 SER A 149 REMARK 465 ALA A 150 REMARK 465 PHE A 151 REMARK 465 GLU A 152 REMARK 465 SER A 153 REMARK 465 VAL A 154 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 SER A 157 REMARK 465 ASP A 158 REMARK 465 ASP A 159 REMARK 465 ASP A 160 REMARK 465 ASP A 161 REMARK 465 ASN A 162 REMARK 465 LEU A 163 REMARK 465 THR A 164 REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 GLY A 168 REMARK 465 LEU A 169 REMARK 465 ASP A 170 REMARK 465 ALA A 171 REMARK 465 SER A 172 REMARK 465 TYR A 173 REMARK 465 LEU A 174 REMARK 465 GLN A 175 REMARK 465 ALA A 176 REMARK 465 ASN A 177 REMARK 465 GLY A 178 REMARK 465 ASP A 179 REMARK 465 ASN A 180 REMARK 465 GLU A 181 REMARK 465 MET A 182 REMARK 465 PRO A 183 REMARK 465 ALA A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 ASN A 187 REMARK 465 GLU A 188 REMARK 465 GLU A 189 REMARK 465 GLN A 190 REMARK 465 ILE A 191 REMARK 465 SER A 192 REMARK 465 MET A 193 REMARK 465 ALA A 194 REMARK 465 ALA A 195 REMARK 465 SER A 196 REMARK 465 SER A 197 REMARK 465 MET A 198 REMARK 465 ILE A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 HIS A 202 REMARK 465 SER A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 ASP A 207 REMARK 465 LEU A 208 REMARK 465 HIS A 209 REMARK 465 GLY A 210 REMARK 465 VAL A 211 REMARK 465 VAL A 274 REMARK 465 ILE A 275 REMARK 465 SER A 276 REMARK 465 ASP A 277 REMARK 465 PRO A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 PRO A 281 REMARK 465 LYS A 282 REMARK 465 PRO A 283 REMARK 465 ASN A 284 REMARK 465 THR A 285 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 446 N LEU A 448 2.11 REMARK 500 CB LYS A 466 O3S CF5 A 841 2.17 REMARK 500 N ASP A 318 O HOH A 860 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 357 NE2 GLN A 357 10444 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 223 N - CA - C ANGL. DEV. = 25.5 DEGREES REMARK 500 ALA A 327 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 ASP A 449 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 HIS A 451 N - CA - C ANGL. DEV. = 29.3 DEGREES REMARK 500 PHE A 575 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 LEU A 587 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 VAL A 600 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO A 610 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO A 658 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 736 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 PRO A 808 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 213 126.54 31.37 REMARK 500 ASP A 214 97.53 86.64 REMARK 500 ALA A 217 -74.74 -76.76 REMARK 500 ALA A 218 119.64 15.10 REMARK 500 LEU A 221 -91.51 -133.20 REMARK 500 ARG A 222 -148.06 -170.98 REMARK 500 LYS A 223 145.64 100.97 REMARK 500 GLN A 227 104.58 178.10 REMARK 500 PHE A 230 -141.24 -77.71 REMARK 500 VAL A 231 127.86 67.30 REMARK 500 ARG A 232 -176.19 178.53 REMARK 500 VAL A 235 76.36 46.35 REMARK 500 LEU A 237 -76.31 -136.08 REMARK 500 GLU A 238 -41.34 90.83 REMARK 500 VAL A 239 130.89 35.06 REMARK 500 PRO A 240 -148.48 -83.38 REMARK 500 ALA A 247 -62.77 -162.09 REMARK 500 TYR A 261 -69.15 -177.30 REMARK 500 GLU A 265 98.64 -53.26 REMARK 500 THR A 266 -29.63 -29.95 REMARK 500 PRO A 269 -52.64 -22.60 REMARK 500 GLU A 271 54.42 -106.29 REMARK 500 LYS A 272 46.00 -77.58 REMARK 500 PRO A 287 -127.79 -64.31 REMARK 500 PHE A 288 -11.32 -160.68 REMARK 500 HIS A 290 -147.71 111.07 REMARK 500 TYR A 291 121.92 68.18 REMARK 500 GLN A 293 -94.21 -132.53 REMARK 500 LYS A 295 117.23 -27.25 REMARK 500 SER A 296 -120.93 -57.71 REMARK 500 ASP A 297 131.24 83.39 REMARK 500 CYS A 299 130.28 65.02 REMARK 500 PHE A 300 -68.56 -106.89 REMARK 500 VAL A 309 86.10 27.62 REMARK 500 ALA A 311 126.13 -38.52 REMARK 500 ASN A 312 -50.81 -11.08 REMARK 500 LYS A 313 -101.92 -78.85 REMARK 500 ALA A 315 -135.60 -100.40 REMARK 500 LYS A 316 19.05 -177.22 REMARK 500 GLU A 317 -26.45 -143.02 REMARK 500 ASP A 318 -171.20 64.94 REMARK 500 LEU A 319 37.23 -74.66 REMARK 500 PHE A 320 60.96 -0.27 REMARK 500 PRO A 321 -145.01 -108.26 REMARK 500 VAL A 322 136.27 24.05 REMARK 500 ALA A 325 -72.12 -48.10 REMARK 500 ALA A 327 -86.55 121.12 REMARK 500 LYS A 337 -71.03 -86.48 REMARK 500 ALA A 377 77.82 -108.78 REMARK 500 TYR A 383 -75.86 -39.42 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 840 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 391 NE2 REMARK 620 2 HIS A 393 NE2 112.4 REMARK 620 3 HIS A 659 NE2 86.2 95.5 REMARK 620 4 ASP A 736 OD2 86.1 99.1 165.2 REMARK 620 5 CF5 A 841 N4 170.1 74.8 86.4 99.7 REMARK 620 6 CF5 A 841 O8 107.6 140.0 88.3 82.0 65.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 840 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 842 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CF5 A 841 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.11648 RELATED DB: TARGETDB DBREF 2A3L A 139 839 UNP O80452 O80452_ARATH 139 839 SEQADV 2A3L MET A 139 UNP O80452 ILE 139 ENGINEERED MUTATION SEQRES 1 A 701 MET SER PRO LYS SER PRO VAL ALA SER ALA SER ALA PHE SEQRES 2 A 701 GLU SER VAL GLU GLU SER ASP ASP ASP ASP ASN LEU THR SEQRES 3 A 701 ASN SER GLU GLY LEU ASP ALA SER TYR LEU GLN ALA ASN SEQRES 4 A 701 GLY ASP ASN GLU MET PRO ALA ASP ALA ASN GLU GLU GLN SEQRES 5 A 701 ILE SER MET ALA ALA SER SER MET ILE ARG SER HIS SER SEQRES 6 A 701 VAL SER GLY ASP LEU HIS GLY VAL GLN PRO ASP PRO ILE SEQRES 7 A 701 ALA ALA ASP ILE LEU ARG LYS GLU PRO GLU GLN GLU THR SEQRES 8 A 701 PHE VAL ARG LEU ASN VAL PRO LEU GLU VAL PRO THR SER SEQRES 9 A 701 ASP GLU VAL GLU ALA TYR LYS CYS LEU GLN GLU CYS LEU SEQRES 10 A 701 GLU LEU ARG LYS ARG TYR VAL PHE GLN GLU THR VAL ALA SEQRES 11 A 701 PRO TRP GLU LYS GLU VAL ILE SER ASP PRO SER THR PRO SEQRES 12 A 701 LYS PRO ASN THR GLU PRO PHE ALA HIS TYR PRO GLN GLY SEQRES 13 A 701 LYS SER ASP HIS CYS PHE GLU MET GLN ASP GLY VAL VAL SEQRES 14 A 701 HIS VAL PHE ALA ASN LYS ASP ALA LYS GLU ASP LEU PHE SEQRES 15 A 701 PRO VAL ALA ASP ALA THR ALA PHE PHE THR ASP LEU HIS SEQRES 16 A 701 HIS VAL LEU LYS VAL ILE ALA ALA GLY ASN ILE ARG THR SEQRES 17 A 701 LEU CYS HIS ARG ARG LEU VAL LEU LEU GLU GLN LYS PHE SEQRES 18 A 701 ASN LEU HIS LEU MET LEU ASN ALA ASP LYS GLU PHE LEU SEQRES 19 A 701 ALA GLN LYS SER ALA PRO HIS ARG ASP PHE TYR ASN VAL SEQRES 20 A 701 ARG LYS VAL ASP THR HIS VAL HIS HIS SER ALA CYS MET SEQRES 21 A 701 ASN GLN LYS HIS LEU LEU ARG PHE ILE LYS SER LYS LEU SEQRES 22 A 701 ARG LYS GLU PRO ASP GLU VAL VAL ILE PHE ARG ASP GLY SEQRES 23 A 701 THR TYR LEU THR LEU ARG GLU VAL PHE GLU SER LEU ASP SEQRES 24 A 701 LEU THR GLY TYR ASP LEU ASN VAL ASP LEU LEU ASP VAL SEQRES 25 A 701 HIS ALA ASP LYS SER THR PHE HIS ARG PHE ASP LYS PHE SEQRES 26 A 701 ASN LEU LYS TYR ASN PRO CYS GLY GLN SER ARG LEU ARG SEQRES 27 A 701 GLU ILE PHE LEU LYS GLN ASP ASN LEU ILE GLN GLY ARG SEQRES 28 A 701 PHE LEU GLY GLU ILE THR LYS GLN VAL PHE SER ASP LEU SEQRES 29 A 701 GLU ALA SER LYS TYR GLN MET ALA GLU TYR ARG ILE SER SEQRES 30 A 701 ILE TYR GLY ARG LYS MET SER GLU TRP ASP GLN LEU ALA SEQRES 31 A 701 SER TRP ILE VAL ASN ASN ASP LEU TYR SER GLU ASN VAL SEQRES 32 A 701 VAL TRP LEU ILE GLN LEU PRO ARG LEU TYR ASN ILE TYR SEQRES 33 A 701 LYS ASP MET GLY ILE VAL THR SER PHE GLN ASN ILE LEU SEQRES 34 A 701 ASP ASN ILE PHE ILE PRO LEU PHE GLU ALA THR VAL ASP SEQRES 35 A 701 PRO ASP SER HIS PRO GLN LEU HIS VAL PHE LEU LYS GLN SEQRES 36 A 701 VAL VAL GLY PHE ASP LEU VAL ASP ASP GLU SER LYS PRO SEQRES 37 A 701 GLU ARG ARG PRO THR LYS HIS MET PRO THR PRO ALA GLN SEQRES 38 A 701 TRP THR ASN ALA PHE ASN PRO ALA PHE SER TYR TYR VAL SEQRES 39 A 701 TYR TYR CYS TYR ALA ASN LEU TYR VAL LEU ASN LYS LEU SEQRES 40 A 701 ARG GLU SER LYS GLY MET THR THR ILE THR LEU ARG PRO SEQRES 41 A 701 HIS SER GLY GLU ALA GLY ASP ILE ASP HIS LEU ALA ALA SEQRES 42 A 701 THR PHE LEU THR CYS HIS SER ILE ALA HIS GLY ILE ASN SEQRES 43 A 701 LEU ARG LYS SER PRO VAL LEU GLN TYR LEU TYR TYR LEU SEQRES 44 A 701 ALA GLN ILE GLY LEU ALA MET SER PRO LEU SER ASN ASN SEQRES 45 A 701 SER LEU PHE LEU ASP TYR HIS ARG ASN PRO PHE PRO VAL SEQRES 46 A 701 PHE PHE LEU ARG GLY LEU ASN VAL SER LEU SER THR ASP SEQRES 47 A 701 ASP PRO LEU GLN ILE HIS LEU THR LYS GLU PRO LEU VAL SEQRES 48 A 701 GLU GLU TYR SER ILE ALA ALA SER VAL TRP LYS LEU SER SEQRES 49 A 701 ALA CYS ASP LEU CYS GLU ILE ALA ARG ASN SER VAL TYR SEQRES 50 A 701 GLN SER GLY PHE SER HIS ALA LEU LYS SER HIS TRP ILE SEQRES 51 A 701 GLY LYS ASP TYR TYR LYS ARG GLY PRO ASP GLY ASN ASP SEQRES 52 A 701 ILE HIS LYS THR ASN VAL PRO HIS ILE ARG VAL GLU PHE SEQRES 53 A 701 ARG ASP THR ILE TRP LYS GLU GLU MET GLN GLN VAL TYR SEQRES 54 A 701 LEU GLY LYS ALA VAL ILE SER ASP GLU VAL VAL PRO HET ZN A 840 1 HET PO4 A 842 5 HET CF5 A 841 24 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM CF5 COFORMYCIN 5'-PHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 CF5 C11 H17 N4 O8 P FORMUL 5 HOH *24(H2 O) HELIX 1 1 ALA A 247 ARG A 260 1 14 HELIX 2 2 ASP A 324 ILE A 339 1 16 HELIX 3 3 ALA A 341 GLN A 374 1 34 HELIX 4 4 LYS A 375 ALA A 377 5 3 HELIX 5 5 ASN A 399 LYS A 413 1 15 HELIX 6 6 THR A 428 ASP A 437 1 10 HELIX 7 7 PHE A 463 ASN A 468 1 6 HELIX 8 8 SER A 473 LEU A 480 1 8 HELIX 9 9 PHE A 490 GLU A 503 1 14 HELIX 10 10 SER A 522 ASN A 533 1 12 HELIX 11 11 LEU A 550 LYS A 555 1 6 HELIX 12 12 PHE A 563 PHE A 571 1 9 HELIX 13 13 ILE A 572 ASP A 580 1 9 HELIX 14 14 PRO A 581 HIS A 584 5 4 HELIX 15 15 LEU A 587 LYS A 592 1 6 HELIX 16 16 ALA A 627 GLU A 647 1 21 HELIX 17 17 ILE A 666 CYS A 676 1 11 HELIX 18 18 GLY A 682 LYS A 687 5 6 HELIX 19 19 SER A 688 GLN A 699 1 12 HELIX 20 20 SER A 705 ASN A 710 1 6 HELIX 21 21 PRO A 720 ARG A 727 1 8 HELIX 22 22 ASP A 737 HIS A 742 1 6 HELIX 23 23 GLU A 746 LYS A 760 1 15 HELIX 24 24 SER A 762 SER A 777 1 16 HELIX 25 25 SER A 780 ILE A 788 1 9 HELIX 26 26 GLY A 796 ASN A 800 5 5 HELIX 27 27 ASP A 801 ASN A 806 1 6 HELIX 28 28 PRO A 808 TYR A 827 1 20 SHEET 1 A 5 LYS A 387 HIS A 393 0 SHEET 2 A 5 GLN A 508 SER A 515 1 O MET A 509 N LYS A 387 SHEET 3 A 5 VAL A 541 PRO A 548 1 O LEU A 544 N ILE A 514 SHEET 4 A 5 VAL A 594 VAL A 600 1 O VAL A 595 N TRP A 543 SHEET 5 A 5 THR A 655 LEU A 656 1 O THR A 655 N PHE A 597 SHEET 1 B 2 ILE A 420 ARG A 422 0 SHEET 2 B 2 THR A 425 LEU A 427 -1 O LEU A 427 N ILE A 420 SHEET 1 C 2 LEU A 702 MET A 704 0 SHEET 2 C 2 VAL A 731 LEU A 733 1 O SER A 732 N MET A 704 LINK NE2 HIS A 391 ZN ZN A 840 1555 1555 2.11 LINK NE2 HIS A 393 ZN ZN A 840 1555 1555 2.05 LINK NE2 HIS A 659 ZN ZN A 840 1555 1555 1.96 LINK OD2 ASP A 736 ZN ZN A 840 1555 1555 2.27 LINK ZN ZN A 840 N4 CF5 A 841 1555 1555 2.66 LINK ZN ZN A 840 O8 CF5 A 841 1555 1555 1.81 SITE 1 AC1 5 HIS A 391 HIS A 393 HIS A 659 ASP A 736 SITE 2 AC1 5 CF5 A 841 SITE 1 AC2 2 ARG A 380 ARG A 386 SITE 1 AC3 15 ILE A 220 HIS A 391 HIS A 393 LYS A 462 SITE 2 AC3 15 PHE A 463 LYS A 466 TYR A 467 HIS A 659 SITE 3 AC3 15 GLU A 662 HIS A 681 SER A 708 ASP A 736 SITE 4 AC3 15 ASP A 737 GLN A 740 ZN A 840 CRYST1 131.325 131.325 208.254 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007615 0.004396 0.000000 0.00000 SCALE2 0.000000 0.008793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004802 0.00000