data_2A5R # _entry.id 2A5R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2A5R pdb_00002a5r 10.2210/pdb2a5r/pdb RCSB RCSB033521 ? ? WWPDB D_1000033521 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2A5R _pdbx_database_status.recvd_initial_deposition_date 2005-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EEG 'A(GGG)A HEXAD' unspecified PDB 1JJP ;A(GGGG) PENTAD, 3' 3+1 TETRAD ; unspecified PDB 1Y8D ;A(GGGG) PENTAD, 3' 3+1 TETRAD ; unspecified PDB 1D6D 'AAT TRIAD IN DIAGONAL LOOP' unspecified PDB 2A5P . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Phan, A.T.' 1 'Kuryavyi, V.V.' 2 'Gaw, H.Y.' 3 'Patel, D.J.' 4 # _citation.id primary _citation.title 'Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 1 _citation.page_first 167 _citation.page_last 173 _citation.year 2005 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16408022 _citation.pdbx_database_id_DOI 10.1038/nchembio723 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Phan, A.T.' 1 ? primary 'Kuryavyi, V.' 2 ? primary 'Gaw, H.Y.' 3 ? primary 'Patel, D.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat "5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*IP*GP*AP*GP*GP*GP*TP*GP*GP*GP*GP*AP*AP*GP*G)-3'" 7701.934 1 ? ? ? ? 2 non-polymer syn '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' 678.826 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DI)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DG) (DA)(DA)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can TGAGGGTGGIGAGGGTGGGGAAGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' _pdbx_entity_nonpoly.comp_id POH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DI n 1 11 DG n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DA n 1 22 DA n 1 23 DG n 1 24 DG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus Homo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'C-MYC GENE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DI 'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 N4 O7 P' 332.207 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 POH non-polymer . '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' TMPyP4 'C44 H38 N8 4' 678.826 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DI 10 10 10 DI I A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DG 13 13 13 DG G A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DG 15 15 15 DG G A . n A 1 16 DT 16 16 16 DT T A . n A 1 17 DG 17 17 17 DG G A . n A 1 18 DG 18 18 18 DG G A . n A 1 19 DG 19 19 19 DG G A . n A 1 20 DG 20 20 20 DG G A . n A 1 21 DA 21 21 21 DA A A . n A 1 22 DA 22 22 22 DA A A . n A 1 23 DG 23 23 23 DG G A . n A 1 24 DG 24 24 24 DG G A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id POH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 25 _pdbx_nonpoly_scheme.auth_seq_num 25 _pdbx_nonpoly_scheme.pdb_mon_id POH _pdbx_nonpoly_scheme.auth_mon_id POH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.entry_id 2A5R _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2A5R _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2A5R _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 2A5R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2A5R _struct.title ;Complex of tetra-(4-n-methylpyridyl) porphin with monomeric parallel-stranded DNA tetraplex, snap-back 3+1 3' G-tetrad, single-residue chain reversal loops, GAG triad in the context of GAAG diagonal loop, C-MYC promoter, NMR, 6 struct. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2A5R _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;MONOMERIC PARALLEL-STRANDED QUADRUPLEX; C-MYC PROMOTER 3+1 G-TETRAD; SINGLE NUCLEOTIDE CHAIN REVERSAL LOOP; GAG TRIAD; GAAG LOOP, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2A5R _struct_ref.pdbx_db_accession 2A5R _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2A5R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2A5R _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 12 N6 ? ? A DT 1 A DA 12 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DA 12 N6 ? ? A DG 2 A DA 12 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog3 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 4 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 4 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 5 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 5 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 6 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 15 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DA 22 N7 ? ? A DG 20 A DA 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A DG 20 N3 ? ? ? 1_555 A DA 22 N6 ? ? A DG 20 A DA 22 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 20 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A POH 25 ? 8 'BINDING SITE FOR RESIDUE POH A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 1 ? DT A 1 . ? 1_555 ? 2 AC1 8 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 8 DA A 3 ? DA A 3 . ? 1_555 ? 4 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 8 DG A 8 ? DG A 8 . ? 1_555 ? 6 AC1 8 DA A 12 ? DA A 12 . ? 1_555 ? 7 AC1 8 DG A 13 ? DG A 13 . ? 1_555 ? 8 AC1 8 DG A 17 ? DG A 17 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.57 108.30 3.27 0.30 N 2 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.40 108.30 2.10 0.30 N 3 2 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.35 108.30 2.05 0.30 N 4 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.30 108.30 3.00 0.30 N 5 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.51 108.30 2.21 0.30 N 6 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.20 108.30 1.90 0.30 N 7 2 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.84 108.30 2.54 0.30 N 8 3 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.11 108.30 1.81 0.30 N 9 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.19 108.30 2.89 0.30 N 10 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.17 108.30 1.87 0.30 N 11 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.11 108.30 1.81 0.30 N 12 3 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.83 108.30 2.53 0.30 N 13 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.57 108.30 2.27 0.30 N 14 4 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.77 108.30 3.47 0.30 N 15 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.12 108.30 1.82 0.30 N 16 4 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 111.14 108.30 2.84 0.30 N 17 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.21 108.30 1.91 0.30 N 18 5 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.21 108.30 2.91 0.30 N 19 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.47 108.30 2.17 0.30 N 20 5 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.57 108.30 2.27 0.30 N 21 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.12 108.30 1.82 0.30 N 22 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.35 108.30 3.05 0.30 N 23 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.38 108.30 2.08 0.30 N 24 6 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.59 108.30 2.29 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text intercalation # _pdbx_nmr_ensemble.entry_id 2A5R _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2A5R _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '70 MM KCL 20 MM POTASSIUM PHOSPHATE, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '70 MM KCL 20 MM POTASSIUM PHOSPHATE, 100% D2O' '100% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '90 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '1H-1H NOESY' 1 2 1 '1H-1H TOCSY' 1 3 1 '1H-31P COSY' 1 4 1 '1H-1H COSY' 1 5 1 '1H-15N JRHMQC' 1 6 1 '1H-15N HMBC' 1 7 1 '1H-13C JRHM 1H-13C HMBC' 1 8 1 '1H-13C HSQC' 1 9 1 '1H-13C sHMBC' 1 10 1 '1H-31P TOCSY' 1 # _pdbx_nmr_details.entry_id 2A5R _pdbx_nmr_details.text ;ONE OF THE EIGHT STRUCTURES OBTAINED FOR FREE DNA TETRAPLEX HAS USED FOR INTERACTIVE MODELING (PDB ID 2A5P). PART OF THE MOLECULE INCLUDING RESIDUES 1,2,3 AND 12 WAS LIFTED AS WHOLE. THE TMPYP4 WAS INTERCALATED BETWEEN THE TETRAD G4-G8-G13-G17 AND BASE PAIR A3-A12, GUIDED BY RESTRAINTS BETWEEN THE DRUG AND DNA, AND FAVORABLE POSITIONS OF THE DRUG. BROKEN BONDS BETWEEN THE RESIDUES 11-12-13 AND 3-4 WERE RESTORED, AND MOLECULE WAS SUBJECTED TO MINIMIZATION ROUNDS AND SUBSEQUENT DYNAMICS, WITH THE IMPOSED DNA AND DRUG-DNA RESTRAINTS. INITIALLY, ALL DRUG-DNA RESTRAINTS EXCEPT THESE INVOLVING RESIDUE 1 WERE TREATED AMBIGUOUSLY WITH SUM AVERAGING FROM CONTRIBUTION OF 8 IDENTICAL PROTON ATOMS. THE RESTRAINTS OF THE RESIDUE 1 WERE SPLIT AS ORIGINATING FROM SINGLE (ONE OF 4) PYRIDYL RINGS OF THE TMPYP4 IN FOUR SETS OF COMPUTATIONS. FROM FOUR MOLECULES OBTAINED ONLY ONE WITH LESS VIOLATIONS HAD POSITION OF THE H1' OF THE RESIDUE T1 AS WELL AS H8 OF THE RESIDUE G2 OVER THE AROMATIC RINGS OF THE PORPHYRIN, THUS ACCOUNTING FOR THE UPFIELD SHIFTS OF THESE PROTONS OBSERVED EXPERIMENTALLY. THE POSITION OF THE DRUG IN THE COMPLEX HAS BEEN INCREMENTALLY CHANGED BY ROTATION BY 15 DEG WITHIN THE BOUNDARIES OF VAN DER WAALS SURFACE OF DNA MOLECULE. THE MOLECULE WITH NEW POSITION OF DRUG WAS SUBJECTED TO CONSTRAINED MINIMIZATION AND DYNAMICS RUNS. AFTER THIS ROUND, PYRIDIL RING WAS ALLOWED TO FREE ROTATE AND DYNAMICS AND MINIMIZATION WAS PERFORMED ON SIX COMPLEXES AGAIN. ; # _pdbx_nmr_refine.entry_id 2A5R _pdbx_nmr_refine.method 'DISTANCE RESTRAINED MOLECULAR DYNAMICS REFINEMENT' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.851 'AT BRUNGER' 1 collection VNMR 6.0 VARIAN 2 processing Felix 2000 ACCELRYS 3 refinement 'Insight II' 2000 ACCELRYS 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DI OP3 O N N 74 DI P P N N 75 DI OP1 O N N 76 DI OP2 O N N 77 DI "O5'" O N N 78 DI "C5'" C N N 79 DI "C4'" C N R 80 DI "O4'" O N N 81 DI "C3'" C N S 82 DI "O3'" O N N 83 DI "C2'" C N N 84 DI "C1'" C N R 85 DI N9 N Y N 86 DI C8 C Y N 87 DI N7 N Y N 88 DI C5 C Y N 89 DI C6 C N N 90 DI O6 O N N 91 DI N1 N N N 92 DI C2 C N N 93 DI N3 N N N 94 DI C4 C Y N 95 DI HOP3 H N N 96 DI HOP2 H N N 97 DI "H5'" H N N 98 DI "H5''" H N N 99 DI "H4'" H N N 100 DI "H3'" H N N 101 DI "HO3'" H N N 102 DI "H2'" H N N 103 DI "H2''" H N N 104 DI "H1'" H N N 105 DI H8 H N N 106 DI H1 H N N 107 DI H2 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 POH CX3 C Y N 145 POH C2A C Y N 146 POH C71 C Y N 147 POH C81 C Y N 148 POH C91 C Y N 149 POH CXN C N N 150 POH C3A C Y N 151 POH C4A C Y N 152 POH C1A C Y N 153 POH CXD C Y N 154 POH NXT N Y N 155 POH NA N Y N 156 POH NB N Y N 157 POH NC N Y N 158 POH ND N Y N 159 POH CHB C Y N 160 POH C1B C Y N 161 POH CX4 C Y N 162 POH C2B C Y N 163 POH C72 C Y N 164 POH C82 C Y N 165 POH C92 C Y N 166 POH CXO C N N 167 POH C3B C Y N 168 POH C4B C Y N 169 POH CXE C Y N 170 POH NXU N Y N 171 POH CHC C Y N 172 POH C1C C Y N 173 POH CX5 C Y N 174 POH C2C C Y N 175 POH C73 C Y N 176 POH C83 C Y N 177 POH C93 C Y N 178 POH CXP C N N 179 POH C3C C Y N 180 POH C4C C Y N 181 POH CXF C Y N 182 POH NXV N Y N 183 POH CHD C Y N 184 POH C1D C Y N 185 POH CX6 C Y N 186 POH C2D C Y N 187 POH C74 C Y N 188 POH C84 C Y N 189 POH C94 C Y N 190 POH CXQ C N N 191 POH C3D C Y N 192 POH C4D C Y N 193 POH CXG C Y N 194 POH CHA C Y N 195 POH NXW N Y N 196 POH H51 H N N 197 POH H11 H N N 198 POH H31 H N N 199 POH H41 H N N 200 POH H811 H N N 201 POH H821 H N N 202 POH H831 H N N 203 POH H21 H N N 204 POH H61 H N N 205 POH H71 H N N 206 POH H73 H N N 207 POH H52 H N N 208 POH H12 H N N 209 POH H32 H N N 210 POH H42 H N N 211 POH H812 H N N 212 POH H822 H N N 213 POH H832 H N N 214 POH H22 H N N 215 POH H62 H N N 216 POH H53 H N N 217 POH H13 H N N 218 POH H33 H N N 219 POH H43 H N N 220 POH H813 H N N 221 POH H823 H N N 222 POH H833 H N N 223 POH H23 H N N 224 POH H63 H N N 225 POH H54 H N N 226 POH H14 H N N 227 POH H34 H N N 228 POH H44 H N N 229 POH H814 H N N 230 POH H824 H N N 231 POH H834 H N N 232 POH H24 H N N 233 POH H64 H N N 234 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DI OP3 P sing N N 78 DI OP3 HOP3 sing N N 79 DI P OP1 doub N N 80 DI P OP2 sing N N 81 DI P "O5'" sing N N 82 DI OP2 HOP2 sing N N 83 DI "O5'" "C5'" sing N N 84 DI "C5'" "C4'" sing N N 85 DI "C5'" "H5'" sing N N 86 DI "C5'" "H5''" sing N N 87 DI "C4'" "O4'" sing N N 88 DI "C4'" "C3'" sing N N 89 DI "C4'" "H4'" sing N N 90 DI "O4'" "C1'" sing N N 91 DI "C3'" "O3'" sing N N 92 DI "C3'" "C2'" sing N N 93 DI "C3'" "H3'" sing N N 94 DI "O3'" "HO3'" sing N N 95 DI "C2'" "C1'" sing N N 96 DI "C2'" "H2'" sing N N 97 DI "C2'" "H2''" sing N N 98 DI "C1'" N9 sing N N 99 DI "C1'" "H1'" sing N N 100 DI N9 C8 sing Y N 101 DI N9 C4 sing Y N 102 DI C8 N7 doub Y N 103 DI C8 H8 sing N N 104 DI N7 C5 sing Y N 105 DI C5 C6 sing N N 106 DI C5 C4 doub Y N 107 DI C6 O6 doub N N 108 DI C6 N1 sing N N 109 DI N1 C2 sing N N 110 DI N1 H1 sing N N 111 DI C2 N3 doub N N 112 DI C2 H2 sing N N 113 DI N3 C4 sing N N 114 DT OP3 P sing N N 115 DT OP3 HOP3 sing N N 116 DT P OP1 doub N N 117 DT P OP2 sing N N 118 DT P "O5'" sing N N 119 DT OP2 HOP2 sing N N 120 DT "O5'" "C5'" sing N N 121 DT "C5'" "C4'" sing N N 122 DT "C5'" "H5'" sing N N 123 DT "C5'" "H5''" sing N N 124 DT "C4'" "O4'" sing N N 125 DT "C4'" "C3'" sing N N 126 DT "C4'" "H4'" sing N N 127 DT "O4'" "C1'" sing N N 128 DT "C3'" "O3'" sing N N 129 DT "C3'" "C2'" sing N N 130 DT "C3'" "H3'" sing N N 131 DT "O3'" "HO3'" sing N N 132 DT "C2'" "C1'" sing N N 133 DT "C2'" "H2'" sing N N 134 DT "C2'" "H2''" sing N N 135 DT "C1'" N1 sing N N 136 DT "C1'" "H1'" sing N N 137 DT N1 C2 sing N N 138 DT N1 C6 sing N N 139 DT C2 O2 doub N N 140 DT C2 N3 sing N N 141 DT N3 C4 sing N N 142 DT N3 H3 sing N N 143 DT C4 O4 doub N N 144 DT C4 C5 sing N N 145 DT C5 C7 sing N N 146 DT C5 C6 doub N N 147 DT C7 H71 sing N N 148 DT C7 H72 sing N N 149 DT C7 H73 sing N N 150 DT C6 H6 sing N N 151 POH CX3 CXD doub Y N 152 POH CX3 NXT sing Y N 153 POH C2A C3A doub Y N 154 POH C2A C1A sing Y N 155 POH C71 C81 doub Y N 156 POH C71 CXD sing Y N 157 POH C71 CHB sing Y N 158 POH C81 C91 sing Y N 159 POH C91 NXT doub Y N 160 POH CXN NXT sing N N 161 POH C3A C4A sing Y N 162 POH C4A NA sing Y N 163 POH C4A CHB doub Y N 164 POH C1A NA sing Y N 165 POH C1A CHA doub Y N 166 POH NB C1B doub Y N 167 POH NB C4B sing Y N 168 POH NC C1C sing Y N 169 POH NC C4C sing Y N 170 POH ND C1D sing Y N 171 POH ND C4D doub Y N 172 POH CHB C1B sing Y N 173 POH C1B C2B sing Y N 174 POH CX4 CXE doub Y N 175 POH CX4 NXU sing Y N 176 POH C2B C3B doub Y N 177 POH C72 C82 doub Y N 178 POH C72 CXE sing Y N 179 POH C72 CHC sing Y N 180 POH C82 C92 sing Y N 181 POH C92 NXU doub Y N 182 POH CXO NXU sing N N 183 POH C3B C4B sing Y N 184 POH C4B CHC doub Y N 185 POH CHC C1C sing Y N 186 POH C1C C2C doub Y N 187 POH CX5 CXF doub Y N 188 POH CX5 NXV sing Y N 189 POH C2C C3C sing Y N 190 POH C73 C83 doub Y N 191 POH C73 CXF sing Y N 192 POH C73 CHD sing Y N 193 POH C83 C93 sing Y N 194 POH C93 NXV doub Y N 195 POH CXP NXV sing N N 196 POH C3C C4C doub Y N 197 POH C4C CHD sing Y N 198 POH CHD C1D doub Y N 199 POH C1D C2D sing Y N 200 POH CX6 CXG sing Y N 201 POH CX6 NXW doub Y N 202 POH C2D C3D doub Y N 203 POH C74 C84 sing Y N 204 POH C74 CXG doub Y N 205 POH C74 CHA sing Y N 206 POH C84 C94 doub Y N 207 POH C94 NXW sing Y N 208 POH CXQ NXW sing N N 209 POH C3D C4D sing Y N 210 POH C4D CHA sing Y N 211 POH CX3 H51 sing N N 212 POH C2A H11 sing N N 213 POH C81 H31 sing N N 214 POH C91 H41 sing N N 215 POH CXN H811 sing N N 216 POH CXN H821 sing N N 217 POH CXN H831 sing N N 218 POH C3A H21 sing N N 219 POH CXD H61 sing N N 220 POH NA H71 sing N N 221 POH NC H73 sing N N 222 POH CX4 H52 sing N N 223 POH C2B H12 sing N N 224 POH C82 H32 sing N N 225 POH C92 H42 sing N N 226 POH CXO H812 sing N N 227 POH CXO H822 sing N N 228 POH CXO H832 sing N N 229 POH C3B H22 sing N N 230 POH CXE H62 sing N N 231 POH CX5 H53 sing N N 232 POH C2C H13 sing N N 233 POH C83 H33 sing N N 234 POH C93 H43 sing N N 235 POH CXP H813 sing N N 236 POH CXP H823 sing N N 237 POH CXP H833 sing N N 238 POH C3C H23 sing N N 239 POH CXF H63 sing N N 240 POH CX6 H54 sing N N 241 POH C2D H14 sing N N 242 POH C84 H34 sing N N 243 POH C94 H44 sing N N 244 POH CXQ H814 sing N N 245 POH CXQ H824 sing N N 246 POH CXQ H834 sing N N 247 POH C3D H24 sing N N 248 POH CXG H64 sing N N 249 # _ndb_struct_conf_na.entry_id 2A5R _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 'VARIAN UNITY INOVA' Varian 600 ? 2 AVANCE Bruker 800 ? # _atom_sites.entry_id 2A5R _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_