HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-JUL-05 2A67 TITLE CRYSTAL STRUCTURE OF ISOCHORISMATASE FAMILY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCHORISMATASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PMCSG KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.HATZOS,F.COLLART,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2A67 1 VERSN REVDAT 2 24-FEB-09 2A67 1 VERSN REVDAT 1 16-AUG-05 2A67 0 JRNL AUTH C.CHANG,C.HATZOS,F.COLLART,S.MOY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ISOCHORISMATASE FAMILY PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 62953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3196 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4139 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5565 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7584 ; 1.833 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 8.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;38.607 ;24.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 937 ;15.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.285 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4256 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2616 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3722 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 348 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.434 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3495 ; 1.144 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5476 ; 1.784 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2347 ; 3.091 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2101 ; 3.983 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1000, NA/K PHOSPHATE, NACL, PH 6.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.48600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.48600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 172 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 165 OG REMARK 470 LEU C 166 CG CD1 CD2 REMARK 470 LEU D 166 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 169 O HOH D 236 1.75 REMARK 500 O HOH B 191 O HOH B 220 1.79 REMARK 500 O HOH C 182 O HOH C 228 2.06 REMARK 500 SG CYS D 113 O HOH D 203 2.11 REMARK 500 O HOH C 183 O HOH C 198 2.17 REMARK 500 O ALA C 83 O HOH C 217 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 201 O HOH C 201 2656 1.40 REMARK 500 O LEU B 166 O HOH D 169 1556 1.62 REMARK 500 O HOH B 175 O HOH D 237 1556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 113 CB CYS A 113 SG 0.140 REMARK 500 MSE D 120 SE MSE D 120 CE -0.380 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU A 161 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 LEU A 161 CB - CG - CD2 ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU B 16 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG B 159 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU B 161 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU B 161 CB - CG - CD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU C 16 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 ARG D 159 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 159 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 128.82 87.71 REMARK 500 SER A 17 168.47 168.76 REMARK 500 THR A 19 -31.56 78.85 REMARK 500 GLN A 20 79.10 -114.07 REMARK 500 PHE A 112 -95.16 -103.28 REMARK 500 GLU B 16 101.18 56.37 REMARK 500 PRO B 18 -98.97 -15.38 REMARK 500 THR B 19 -84.63 76.76 REMARK 500 LEU B 56 58.75 -159.01 REMARK 500 PHE B 112 -105.43 -100.81 REMARK 500 PHE C 66 127.13 -38.46 REMARK 500 PHE C 112 -98.93 -106.94 REMARK 500 GLU D 16 77.90 56.55 REMARK 500 PHE D 112 -97.59 -106.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 15 GLU B 16 57.22 REMARK 500 PRO B 18 THR B 19 60.49 REMARK 500 ILE C 15 GLU C 16 136.21 REMARK 500 ILE D 15 GLU D 16 51.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 15 19.2 L L OUTSIDE RANGE REMARK 500 GLU A 16 24.5 L L OUTSIDE RANGE REMARK 500 ILE B 15 18.5 L L OUTSIDE RANGE REMARK 500 GLU B 16 12.9 L L OUTSIDE RANGE REMARK 500 THR B 19 19.7 L L OUTSIDE RANGE REMARK 500 GLU C 16 19.7 L L OUTSIDE RANGE REMARK 500 ILE D 15 22.0 L L OUTSIDE RANGE REMARK 500 GLU D 16 9.1 L L EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29615 RELATED DB: TARGETDB DBREF 2A67 A 1 166 UNP Q82ZG7 Q82ZG7_ENTFA 1 166 DBREF 2A67 B 1 166 UNP Q82ZG7 Q82ZG7_ENTFA 1 166 DBREF 2A67 C 1 166 UNP Q82ZG7 Q82ZG7_ENTFA 1 166 DBREF 2A67 D 1 166 UNP Q82ZG7 Q82ZG7_ENTFA 1 166 SEQADV 2A67 ALA A 0 UNP Q82ZG7 CLONING ARTIFACT SEQADV 2A67 MSE A 1 UNP Q82ZG7 MET 1 MODIFIED RESIDUE SEQADV 2A67 MSE A 120 UNP Q82ZG7 MET 120 MODIFIED RESIDUE SEQADV 2A67 MSE A 130 UNP Q82ZG7 MET 130 MODIFIED RESIDUE SEQADV 2A67 ALA B 0 UNP Q82ZG7 CLONING ARTIFACT SEQADV 2A67 MSE B 1 UNP Q82ZG7 MET 1 MODIFIED RESIDUE SEQADV 2A67 MSE B 120 UNP Q82ZG7 MET 120 MODIFIED RESIDUE SEQADV 2A67 MSE B 130 UNP Q82ZG7 MET 130 MODIFIED RESIDUE SEQADV 2A67 ALA C 0 UNP Q82ZG7 CLONING ARTIFACT SEQADV 2A67 MSE C 1 UNP Q82ZG7 MET 1 MODIFIED RESIDUE SEQADV 2A67 MSE C 120 UNP Q82ZG7 MET 120 MODIFIED RESIDUE SEQADV 2A67 MSE C 130 UNP Q82ZG7 MET 130 MODIFIED RESIDUE SEQADV 2A67 ALA D 0 UNP Q82ZG7 CLONING ARTIFACT SEQADV 2A67 MSE D 1 UNP Q82ZG7 MET 1 MODIFIED RESIDUE SEQADV 2A67 MSE D 120 UNP Q82ZG7 MET 120 MODIFIED RESIDUE SEQADV 2A67 MSE D 130 UNP Q82ZG7 MET 130 MODIFIED RESIDUE SEQRES 1 A 167 ALA MSE LYS ASN ARG ALA LEU LEU LEU ILE ASP PHE GLN SEQRES 2 A 167 LYS GLY ILE GLU SER PRO THR GLN GLN LEU TYR ARG LEU SEQRES 3 A 167 PRO ALA VAL LEU ASP LYS VAL ASN GLN ARG ILE ALA VAL SEQRES 4 A 167 TYR ARG GLN HIS HIS ALA PRO ILE ILE PHE VAL GLN HIS SEQRES 5 A 167 GLU GLU THR GLU LEU PRO PHE GLY SER ASP SER TRP GLN SEQRES 6 A 167 LEU PHE GLU LYS LEU ASP THR GLN PRO THR ASP PHE PHE SEQRES 7 A 167 ILE ARG LYS THR HIS ALA ASN ALA PHE TYR GLN THR ASN SEQRES 8 A 167 LEU ASN ASP LEU LEU THR GLU GLN ALA VAL GLN THR LEU SEQRES 9 A 167 GLU ILE ALA GLY VAL GLN THR GLU PHE CYS VAL ASP THR SEQRES 10 A 167 THR ILE ARG MSE ALA HIS GLY LEU GLY TYR THR CYS LEU SEQRES 11 A 167 MSE THR PRO LYS THR THR SER THR LEU ASP ASN GLY HIS SEQRES 12 A 167 LEU THR ALA ALA GLN ILE ILE GLN HIS HIS GLU ALA ILE SEQRES 13 A 167 TRP ALA GLY ARG PHE LEU THR PHE LEU SER LEU SEQRES 1 B 167 ALA MSE LYS ASN ARG ALA LEU LEU LEU ILE ASP PHE GLN SEQRES 2 B 167 LYS GLY ILE GLU SER PRO THR GLN GLN LEU TYR ARG LEU SEQRES 3 B 167 PRO ALA VAL LEU ASP LYS VAL ASN GLN ARG ILE ALA VAL SEQRES 4 B 167 TYR ARG GLN HIS HIS ALA PRO ILE ILE PHE VAL GLN HIS SEQRES 5 B 167 GLU GLU THR GLU LEU PRO PHE GLY SER ASP SER TRP GLN SEQRES 6 B 167 LEU PHE GLU LYS LEU ASP THR GLN PRO THR ASP PHE PHE SEQRES 7 B 167 ILE ARG LYS THR HIS ALA ASN ALA PHE TYR GLN THR ASN SEQRES 8 B 167 LEU ASN ASP LEU LEU THR GLU GLN ALA VAL GLN THR LEU SEQRES 9 B 167 GLU ILE ALA GLY VAL GLN THR GLU PHE CYS VAL ASP THR SEQRES 10 B 167 THR ILE ARG MSE ALA HIS GLY LEU GLY TYR THR CYS LEU SEQRES 11 B 167 MSE THR PRO LYS THR THR SER THR LEU ASP ASN GLY HIS SEQRES 12 B 167 LEU THR ALA ALA GLN ILE ILE GLN HIS HIS GLU ALA ILE SEQRES 13 B 167 TRP ALA GLY ARG PHE LEU THR PHE LEU SER LEU SEQRES 1 C 167 ALA MSE LYS ASN ARG ALA LEU LEU LEU ILE ASP PHE GLN SEQRES 2 C 167 LYS GLY ILE GLU SER PRO THR GLN GLN LEU TYR ARG LEU SEQRES 3 C 167 PRO ALA VAL LEU ASP LYS VAL ASN GLN ARG ILE ALA VAL SEQRES 4 C 167 TYR ARG GLN HIS HIS ALA PRO ILE ILE PHE VAL GLN HIS SEQRES 5 C 167 GLU GLU THR GLU LEU PRO PHE GLY SER ASP SER TRP GLN SEQRES 6 C 167 LEU PHE GLU LYS LEU ASP THR GLN PRO THR ASP PHE PHE SEQRES 7 C 167 ILE ARG LYS THR HIS ALA ASN ALA PHE TYR GLN THR ASN SEQRES 8 C 167 LEU ASN ASP LEU LEU THR GLU GLN ALA VAL GLN THR LEU SEQRES 9 C 167 GLU ILE ALA GLY VAL GLN THR GLU PHE CYS VAL ASP THR SEQRES 10 C 167 THR ILE ARG MSE ALA HIS GLY LEU GLY TYR THR CYS LEU SEQRES 11 C 167 MSE THR PRO LYS THR THR SER THR LEU ASP ASN GLY HIS SEQRES 12 C 167 LEU THR ALA ALA GLN ILE ILE GLN HIS HIS GLU ALA ILE SEQRES 13 C 167 TRP ALA GLY ARG PHE LEU THR PHE LEU SER LEU SEQRES 1 D 167 ALA MSE LYS ASN ARG ALA LEU LEU LEU ILE ASP PHE GLN SEQRES 2 D 167 LYS GLY ILE GLU SER PRO THR GLN GLN LEU TYR ARG LEU SEQRES 3 D 167 PRO ALA VAL LEU ASP LYS VAL ASN GLN ARG ILE ALA VAL SEQRES 4 D 167 TYR ARG GLN HIS HIS ALA PRO ILE ILE PHE VAL GLN HIS SEQRES 5 D 167 GLU GLU THR GLU LEU PRO PHE GLY SER ASP SER TRP GLN SEQRES 6 D 167 LEU PHE GLU LYS LEU ASP THR GLN PRO THR ASP PHE PHE SEQRES 7 D 167 ILE ARG LYS THR HIS ALA ASN ALA PHE TYR GLN THR ASN SEQRES 8 D 167 LEU ASN ASP LEU LEU THR GLU GLN ALA VAL GLN THR LEU SEQRES 9 D 167 GLU ILE ALA GLY VAL GLN THR GLU PHE CYS VAL ASP THR SEQRES 10 D 167 THR ILE ARG MSE ALA HIS GLY LEU GLY TYR THR CYS LEU SEQRES 11 D 167 MSE THR PRO LYS THR THR SER THR LEU ASP ASN GLY HIS SEQRES 12 D 167 LEU THR ALA ALA GLN ILE ILE GLN HIS HIS GLU ALA ILE SEQRES 13 D 167 TRP ALA GLY ARG PHE LEU THR PHE LEU SER LEU MODRES 2A67 MSE A 1 MET SELENOMETHIONINE MODRES 2A67 MSE A 120 MET SELENOMETHIONINE MODRES 2A67 MSE A 130 MET SELENOMETHIONINE MODRES 2A67 MSE B 1 MET SELENOMETHIONINE MODRES 2A67 MSE B 120 MET SELENOMETHIONINE MODRES 2A67 MSE B 130 MET SELENOMETHIONINE MODRES 2A67 MSE C 1 MET SELENOMETHIONINE MODRES 2A67 MSE C 120 MET SELENOMETHIONINE MODRES 2A67 MSE C 130 MET SELENOMETHIONINE MODRES 2A67 MSE D 1 MET SELENOMETHIONINE MODRES 2A67 MSE D 120 MET SELENOMETHIONINE MODRES 2A67 MSE D 130 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 120 8 HET MSE A 130 8 HET MSE B 1 8 HET MSE B 120 8 HET MSE B 130 8 HET MSE C 1 8 HET MSE C 120 8 HET MSE C 130 8 HET MSE D 1 8 HET MSE D 120 8 HET MSE D 130 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 HOH *336(H2 O) HELIX 1 1 ARG A 24 HIS A 42 1 19 HELIX 2 2 ASN A 90 GLN A 98 1 9 HELIX 3 3 PHE A 112 GLY A 125 1 14 HELIX 4 4 THR A 144 ALA A 157 1 14 HELIX 5 5 GLN B 12 GLU B 16 5 5 HELIX 6 6 ARG B 24 HIS B 42 1 19 HELIX 7 7 ASN B 90 GLN B 98 1 9 HELIX 8 8 PHE B 112 GLY B 125 1 14 HELIX 9 9 THR B 144 ALA B 157 1 14 HELIX 10 10 GLN C 12 GLU C 16 5 5 HELIX 11 11 ARG C 24 HIS C 42 1 19 HELIX 12 12 ASN C 90 GLN C 98 1 9 HELIX 13 13 PHE C 112 LEU C 124 1 13 HELIX 14 14 THR C 144 ALA C 157 1 14 HELIX 15 15 GLN D 12 GLU D 16 5 5 HELIX 16 16 ARG D 24 HIS D 42 1 19 HELIX 17 17 ASN D 90 GLN D 98 1 9 HELIX 18 18 PHE D 112 GLY D 125 1 14 HELIX 19 19 THR D 144 ALA D 157 1 14 SHEET 1 A 5 PHE A 76 LYS A 80 0 SHEET 2 A 5 ILE A 46 HIS A 51 1 N GLN A 50 O ILE A 78 SHEET 3 A 5 ARG A 4 ILE A 9 1 N LEU A 6 O ILE A 47 SHEET 4 A 5 THR A 102 VAL A 108 1 O GLU A 104 N LEU A 7 SHEET 5 A 5 THR A 135 SER A 136 1 O SER A 136 N GLY A 107 SHEET 1 B 6 PHE A 76 LYS A 80 0 SHEET 2 B 6 ILE A 46 HIS A 51 1 N GLN A 50 O ILE A 78 SHEET 3 B 6 ARG A 4 ILE A 9 1 N LEU A 6 O ILE A 47 SHEET 4 B 6 THR A 102 VAL A 108 1 O GLU A 104 N LEU A 7 SHEET 5 B 6 THR A 127 MSE A 130 1 O LEU A 129 N LEU A 103 SHEET 6 B 6 THR A 162 PHE A 163 1 O THR A 162 N CYS A 128 SHEET 1 C 5 PHE B 76 LYS B 80 0 SHEET 2 C 5 ILE B 46 HIS B 51 1 N PHE B 48 O PHE B 76 SHEET 3 C 5 ARG B 4 ILE B 9 1 N LEU B 8 O ILE B 47 SHEET 4 C 5 THR B 102 VAL B 108 1 O GLU B 104 N LEU B 7 SHEET 5 C 5 THR B 135 SER B 136 1 O SER B 136 N GLY B 107 SHEET 1 D 6 PHE B 76 LYS B 80 0 SHEET 2 D 6 ILE B 46 HIS B 51 1 N PHE B 48 O PHE B 76 SHEET 3 D 6 ARG B 4 ILE B 9 1 N LEU B 8 O ILE B 47 SHEET 4 D 6 THR B 102 VAL B 108 1 O GLU B 104 N LEU B 7 SHEET 5 D 6 THR B 127 MSE B 130 1 O THR B 127 N LEU B 103 SHEET 6 D 6 THR B 162 PHE B 163 1 O THR B 162 N MSE B 130 SHEET 1 E 5 PHE C 76 LYS C 80 0 SHEET 2 E 5 ILE C 46 HIS C 51 1 N PHE C 48 O ILE C 78 SHEET 3 E 5 ARG C 4 ILE C 9 1 N LEU C 8 O ILE C 47 SHEET 4 E 5 THR C 102 VAL C 108 1 O ALA C 106 N ILE C 9 SHEET 5 E 5 THR C 135 SER C 136 1 O SER C 136 N GLY C 107 SHEET 1 F 6 PHE C 76 LYS C 80 0 SHEET 2 F 6 ILE C 46 HIS C 51 1 N PHE C 48 O ILE C 78 SHEET 3 F 6 ARG C 4 ILE C 9 1 N LEU C 8 O ILE C 47 SHEET 4 F 6 THR C 102 VAL C 108 1 O ALA C 106 N ILE C 9 SHEET 5 F 6 THR C 127 MSE C 130 1 O LEU C 129 N LEU C 103 SHEET 6 F 6 THR C 162 PHE C 163 1 O THR C 162 N CYS C 128 SHEET 1 G 5 PHE D 76 LYS D 80 0 SHEET 2 G 5 ILE D 46 HIS D 51 1 N PHE D 48 O ILE D 78 SHEET 3 G 5 ARG D 4 ILE D 9 1 N LEU D 6 O ILE D 47 SHEET 4 G 5 THR D 102 VAL D 108 1 O ALA D 106 N ILE D 9 SHEET 5 G 5 THR D 135 SER D 136 1 O SER D 136 N GLY D 107 SHEET 1 H 6 PHE D 76 LYS D 80 0 SHEET 2 H 6 ILE D 46 HIS D 51 1 N PHE D 48 O ILE D 78 SHEET 3 H 6 ARG D 4 ILE D 9 1 N LEU D 6 O ILE D 47 SHEET 4 H 6 THR D 102 VAL D 108 1 O ALA D 106 N ILE D 9 SHEET 5 H 6 THR D 127 MSE D 130 1 O THR D 127 N LEU D 103 SHEET 6 H 6 THR D 162 PHE D 163 1 O THR D 162 N MSE D 130 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 119 N MSE A 120 1555 1555 1.35 LINK C MSE A 120 N ALA A 121 1555 1555 1.32 LINK C LEU A 129 N MSE A 130 1555 1555 1.32 LINK C MSE A 130 N THR A 131 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.35 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ARG B 119 N MSE B 120 1555 1555 1.34 LINK C MSE B 120 N ALA B 121 1555 1555 1.33 LINK C LEU B 129 N MSE B 130 1555 1555 1.32 LINK C MSE B 130 N THR B 131 1555 1555 1.34 LINK C ALA C 0 N MSE C 1 1555 1555 1.34 LINK C MSE C 1 N LYS C 2 1555 1555 1.34 LINK C ARG C 119 N MSE C 120 1555 1555 1.32 LINK C MSE C 120 N ALA C 121 1555 1555 1.34 LINK C LEU C 129 N MSE C 130 1555 1555 1.33 LINK C MSE C 130 N THR C 131 1555 1555 1.33 LINK C ALA D 0 N MSE D 1 1555 1555 1.34 LINK C MSE D 1 N LYS D 2 1555 1555 1.33 LINK C ARG D 119 N MSE D 120 1555 1555 1.33 LINK C MSE D 120 N ALA D 121 1555 1555 1.32 LINK C LEU D 129 N MSE D 130 1555 1555 1.32 LINK C MSE D 130 N THR D 131 1555 1555 1.32 CISPEP 1 ILE A 15 GLU A 16 0 26.49 CISPEP 2 VAL A 108 GLN A 109 0 -8.50 CISPEP 3 VAL B 108 GLN B 109 0 -10.54 CISPEP 4 VAL C 108 GLN C 109 0 -8.49 CISPEP 5 VAL D 108 GLN D 109 0 -9.34 CRYST1 114.972 102.601 91.088 90.00 116.93 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008698 0.000000 0.004418 0.00000 SCALE2 0.000000 0.009746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012313 0.00000