HEADER OXIDOREDUCTASE 20-JUL-05 2AD8 TITLE CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM M. W3A1 (FORM C) IN TITLE 2 THE PRESENCE OF ETHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHANOL DEHYDROGENASE SUBUNIT 1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MDH LARGE ALPHA SUBUNIT, MEDH; COMPND 5 EC: 1.1.99.8; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHANOL DEHYDROGENASE SUBUNIT 2; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: MDH SMALL BETA SUBUNIT, MDH-ASSOCIATED PEPTIDE, MEDH; COMPND 10 EC: 1.1.99.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 3 ORGANISM_TAXID: 2327; SOURCE 4 STRAIN: W3A1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 7 ORGANISM_TAXID: 2327; SOURCE 8 STRAIN: W3A1 KEYWDS METHANOL DEHYDROGENASE, PQQ CONFIGURATION, ETHANOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,J.-H.GAN,Z.-X.XIA,F.S.MATHEWS REVDAT 5 06-NOV-24 2AD8 1 REMARK LINK REVDAT 4 18-SEP-13 2AD8 1 JRNL REVDAT 3 13-JUL-11 2AD8 1 VERSN REVDAT 2 24-FEB-09 2AD8 1 VERSN REVDAT 1 25-JUL-06 2AD8 0 JRNL AUTH J.LI,J.-H.GAN,F.S.MATHEWS,Z.-X.XIA JRNL TITL THE ENZYMATIC REACTION-INDUCED CONFIGURATION CHANGE OF THE JRNL TITL 2 PROSTHETIC GROUP PQQ OF METHANOL DEHYDROGENASE JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 406 621 2011 JRNL REFN ISSN 0006-291X JRNL PMID 21356200 JRNL DOI 10.1016/J.BBRC.2011.02.107 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 467890.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 154407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 15403 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9317 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1072 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 936 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 3.83000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.010 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 50.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CCIS.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PQQ.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CCIS.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : PQQ.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157861 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG 8000, ETHANOL, PH 8.25, REMARK 280 MACROSEEDING, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.10250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.10250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 51 -159.45 -104.18 REMARK 500 ASN A 52 177.70 71.86 REMARK 500 PRO A 72 26.67 -76.24 REMARK 500 ASP A 82 85.04 -153.91 REMARK 500 ASP A 105 156.87 79.48 REMARK 500 THR A 153 -36.31 -134.37 REMARK 500 LYS A 160 -122.61 56.55 REMARK 500 ARG A 202 80.65 56.53 REMARK 500 GLN A 216 -90.03 -128.30 REMARK 500 TRP A 270 54.37 -109.34 REMARK 500 ALA A 341 79.94 -154.99 REMARK 500 LYS A 353 175.32 177.83 REMARK 500 ASN A 387 -143.49 -120.55 REMARK 500 GLN A 388 1.28 -63.68 REMARK 500 VAL A 425 -71.80 -93.40 REMARK 500 LYS A 474 -15.01 -49.29 REMARK 500 LEU C 51 -158.94 -103.75 REMARK 500 ASN C 52 176.16 72.90 REMARK 500 PRO C 72 26.24 -75.76 REMARK 500 ASP C 82 82.95 -155.63 REMARK 500 ASP C 105 157.87 79.72 REMARK 500 THR C 153 -35.74 -134.22 REMARK 500 LYS C 160 -121.88 54.44 REMARK 500 ARG C 202 74.94 60.45 REMARK 500 GLN C 216 -91.53 -125.05 REMARK 500 TRP C 270 54.91 -110.44 REMARK 500 MET C 272 51.81 39.38 REMARK 500 ALA C 299 112.45 -39.52 REMARK 500 ALA C 341 81.33 -155.18 REMARK 500 LYS C 353 176.54 179.89 REMARK 500 ASN C 387 -142.31 -120.97 REMARK 500 GLN C 388 0.90 -64.54 REMARK 500 VAL C 425 -72.71 -92.29 REMARK 500 SER D 61 -11.66 -171.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 171 OE2 REMARK 620 2 GLU A 171 OE1 47.7 REMARK 620 3 ASN A 255 OD1 96.9 132.1 REMARK 620 4 ASP A 297 OD2 83.0 118.6 77.7 REMARK 620 5 PQQ A 701 O5 131.1 96.3 129.7 91.9 REMARK 620 6 PQQ A 701 N6 113.6 67.1 122.5 149.5 57.7 REMARK 620 7 PQQ A 701 O7A 90.1 72.1 78.2 154.0 111.2 55.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 171 OE2 REMARK 620 2 GLU C 171 OE1 49.2 REMARK 620 3 ASN C 255 OD1 94.8 132.8 REMARK 620 4 ASP C 297 OD2 83.1 120.6 73.2 REMARK 620 5 PQQ C 703 O5 132.9 98.9 127.4 89.7 REMARK 620 6 PQQ C 703 N6 118.1 70.1 123.8 148.2 58.5 REMARK 620 7 PQQ C 703 O7A 92.2 74.2 79.0 151.2 113.5 57.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ C 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AAH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN CRYSTAL FORM A AT 2.4A RESOLUTION REMARK 900 RELATED ID: 1G72 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN CRYSTAL FORM B AT 1.9A RESOLUTION REMARK 900 RELATED ID: 2AD6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN CRYSTAL FORM C REMARK 900 RELATED ID: 2AD7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN CRYSTAL FORM C IN THE PRESENCE OF METHANOL DBREF 2AD8 A 1 571 UNP P38539 DHM1_METME 3 573 DBREF 2AD8 B 1 69 UNP P38540 DHM2_METME 23 91 DBREF 2AD8 C 1 571 UNP P38539 DHM1_METME 3 573 DBREF 2AD8 D 1 69 UNP P38540 DHM2_METME 23 91 SEQRES 1 A 571 ASP ALA ASP LEU ASP LYS GLN VAL ASN THR ALA GLY ALA SEQRES 2 A 571 TRP PRO ILE ALA THR GLY GLY TYR TYR SER GLN HIS ASN SEQRES 3 A 571 SER PRO LEU ALA GLN ILE ASN LYS SER ASN VAL LYS ASN SEQRES 4 A 571 VAL LYS ALA ALA TRP SER PHE SER THR GLY VAL LEU ASN SEQRES 5 A 571 GLY HIS GLU GLY ALA PRO LEU VAL ILE GLY ASP MET MET SEQRES 6 A 571 TYR VAL HIS SER ALA PHE PRO ASN ASN THR TYR ALA LEU SEQRES 7 A 571 ASN LEU ASN ASP PRO GLY LYS ILE VAL TRP GLN HIS LYS SEQRES 8 A 571 PRO LYS GLN ASP ALA SER THR LYS ALA VAL MET CYS CYS SEQRES 9 A 571 ASP VAL VAL ASP ARG GLY LEU ALA TYR GLY ALA GLY GLN SEQRES 10 A 571 ILE VAL LYS LYS GLN ALA ASN GLY HIS LEU LEU ALA LEU SEQRES 11 A 571 ASP ALA LYS THR GLY LYS ILE ASN TRP GLU VAL GLU VAL SEQRES 12 A 571 CYS ASP PRO LYS VAL GLY SER THR LEU THR GLN ALA PRO SEQRES 13 A 571 PHE VAL ALA LYS ASP THR VAL LEU MET GLY CYS SER GLY SEQRES 14 A 571 ALA GLU LEU GLY VAL ARG GLY ALA VAL ASN ALA PHE ASP SEQRES 15 A 571 LEU LYS THR GLY GLU LEU LYS TRP ARG ALA PHE ALA THR SEQRES 16 A 571 GLY SER ASP ASP SER VAL ARG LEU ALA LYS ASP PHE ASN SEQRES 17 A 571 SER ALA ASN PRO HIS TYR GLY GLN PHE GLY LEU GLY THR SEQRES 18 A 571 LYS THR TRP GLU GLY ASP ALA TRP LYS ILE GLY GLY GLY SEQRES 19 A 571 THR ASN TRP GLY TRP TYR ALA TYR ASP PRO LYS LEU ASN SEQRES 20 A 571 LEU PHE TYR TYR GLY SER GLY ASN PRO ALA PRO TRP ASN SEQRES 21 A 571 GLU THR MET ARG PRO GLY ASP ASN LYS TRP THR MET THR SEQRES 22 A 571 ILE TRP GLY ARG ASP LEU ASP THR GLY MET ALA LYS TRP SEQRES 23 A 571 GLY TYR GLN LYS THR PRO HIS ASP GLU TRP ASP PHE ALA SEQRES 24 A 571 GLY VAL ASN GLN MET VAL LEU THR ASP GLN PRO VAL ASN SEQRES 25 A 571 GLY LYS MET THR PRO LEU LEU SER HIS ILE ASP ARG ASN SEQRES 26 A 571 GLY ILE LEU TYR THR LEU ASN ARG GLU ASN GLY ASN LEU SEQRES 27 A 571 ILE VAL ALA GLU LYS VAL ASP PRO ALA VAL ASN VAL PHE SEQRES 28 A 571 LYS LYS VAL ASP LEU LYS THR GLY THR PRO VAL ARG ASP SEQRES 29 A 571 PRO GLU PHE ALA THR ARG MET ASP HIS LYS GLY THR ASN SEQRES 30 A 571 ILE CYS PRO SER ALA MET GLY PHE HIS ASN GLN GLY VAL SEQRES 31 A 571 ASP SER TYR ASP PRO GLU SER ARG THR LEU TYR ALA GLY SEQRES 32 A 571 LEU ASN HIS ILE CYS MET ASP TRP GLU PRO PHE MET LEU SEQRES 33 A 571 PRO TYR ARG ALA GLY GLN PHE PHE VAL GLY ALA THR LEU SEQRES 34 A 571 ALA MET TYR PRO GLY PRO ASN GLY PRO THR LYS LYS GLU SEQRES 35 A 571 MET GLY GLN ILE ARG ALA PHE ASP LEU THR THR GLY LYS SEQRES 36 A 571 ALA LYS TRP THR LYS TRP GLU LYS PHE ALA ALA TRP GLY SEQRES 37 A 571 GLY THR LEU TYR THR LYS GLY GLY LEU VAL TRP TYR ALA SEQRES 38 A 571 THR LEU ASP GLY TYR LEU LYS ALA LEU ASP ASN LYS ASP SEQRES 39 A 571 GLY LYS GLU LEU TRP ASN PHE LYS MET PRO SER GLY GLY SEQRES 40 A 571 ILE GLY SER PRO MET THR TYR SER PHE LYS GLY LYS GLN SEQRES 41 A 571 TYR ILE GLY SER MET TYR GLY VAL GLY GLY TRP PRO GLY SEQRES 42 A 571 VAL GLY LEU VAL PHE ASP LEU THR ASP PRO SER ALA GLY SEQRES 43 A 571 LEU GLY ALA VAL GLY ALA PHE ARG GLU LEU GLN ASN HIS SEQRES 44 A 571 THR GLN MET GLY GLY GLY LEU MET VAL PHE SER LEU SEQRES 1 B 69 TYR ASP GLY GLN ASN CYS LYS GLU PRO GLY ASN CYS TRP SEQRES 2 B 69 GLU ASN LYS PRO GLY TYR PRO GLU LYS ILE ALA GLY SER SEQRES 3 B 69 LYS TYR ASP PRO LYS HIS ASP PRO VAL GLU LEU ASN LYS SEQRES 4 B 69 GLN GLU GLU SER ILE LYS ALA MET ASP ALA ARG ASN ALA SEQRES 5 B 69 LYS ARG ILE ALA ASN ALA LYS SER SER GLY ASN PHE VAL SEQRES 6 B 69 PHE ASP VAL LYS SEQRES 1 C 571 ASP ALA ASP LEU ASP LYS GLN VAL ASN THR ALA GLY ALA SEQRES 2 C 571 TRP PRO ILE ALA THR GLY GLY TYR TYR SER GLN HIS ASN SEQRES 3 C 571 SER PRO LEU ALA GLN ILE ASN LYS SER ASN VAL LYS ASN SEQRES 4 C 571 VAL LYS ALA ALA TRP SER PHE SER THR GLY VAL LEU ASN SEQRES 5 C 571 GLY HIS GLU GLY ALA PRO LEU VAL ILE GLY ASP MET MET SEQRES 6 C 571 TYR VAL HIS SER ALA PHE PRO ASN ASN THR TYR ALA LEU SEQRES 7 C 571 ASN LEU ASN ASP PRO GLY LYS ILE VAL TRP GLN HIS LYS SEQRES 8 C 571 PRO LYS GLN ASP ALA SER THR LYS ALA VAL MET CYS CYS SEQRES 9 C 571 ASP VAL VAL ASP ARG GLY LEU ALA TYR GLY ALA GLY GLN SEQRES 10 C 571 ILE VAL LYS LYS GLN ALA ASN GLY HIS LEU LEU ALA LEU SEQRES 11 C 571 ASP ALA LYS THR GLY LYS ILE ASN TRP GLU VAL GLU VAL SEQRES 12 C 571 CYS ASP PRO LYS VAL GLY SER THR LEU THR GLN ALA PRO SEQRES 13 C 571 PHE VAL ALA LYS ASP THR VAL LEU MET GLY CYS SER GLY SEQRES 14 C 571 ALA GLU LEU GLY VAL ARG GLY ALA VAL ASN ALA PHE ASP SEQRES 15 C 571 LEU LYS THR GLY GLU LEU LYS TRP ARG ALA PHE ALA THR SEQRES 16 C 571 GLY SER ASP ASP SER VAL ARG LEU ALA LYS ASP PHE ASN SEQRES 17 C 571 SER ALA ASN PRO HIS TYR GLY GLN PHE GLY LEU GLY THR SEQRES 18 C 571 LYS THR TRP GLU GLY ASP ALA TRP LYS ILE GLY GLY GLY SEQRES 19 C 571 THR ASN TRP GLY TRP TYR ALA TYR ASP PRO LYS LEU ASN SEQRES 20 C 571 LEU PHE TYR TYR GLY SER GLY ASN PRO ALA PRO TRP ASN SEQRES 21 C 571 GLU THR MET ARG PRO GLY ASP ASN LYS TRP THR MET THR SEQRES 22 C 571 ILE TRP GLY ARG ASP LEU ASP THR GLY MET ALA LYS TRP SEQRES 23 C 571 GLY TYR GLN LYS THR PRO HIS ASP GLU TRP ASP PHE ALA SEQRES 24 C 571 GLY VAL ASN GLN MET VAL LEU THR ASP GLN PRO VAL ASN SEQRES 25 C 571 GLY LYS MET THR PRO LEU LEU SER HIS ILE ASP ARG ASN SEQRES 26 C 571 GLY ILE LEU TYR THR LEU ASN ARG GLU ASN GLY ASN LEU SEQRES 27 C 571 ILE VAL ALA GLU LYS VAL ASP PRO ALA VAL ASN VAL PHE SEQRES 28 C 571 LYS LYS VAL ASP LEU LYS THR GLY THR PRO VAL ARG ASP SEQRES 29 C 571 PRO GLU PHE ALA THR ARG MET ASP HIS LYS GLY THR ASN SEQRES 30 C 571 ILE CYS PRO SER ALA MET GLY PHE HIS ASN GLN GLY VAL SEQRES 31 C 571 ASP SER TYR ASP PRO GLU SER ARG THR LEU TYR ALA GLY SEQRES 32 C 571 LEU ASN HIS ILE CYS MET ASP TRP GLU PRO PHE MET LEU SEQRES 33 C 571 PRO TYR ARG ALA GLY GLN PHE PHE VAL GLY ALA THR LEU SEQRES 34 C 571 ALA MET TYR PRO GLY PRO ASN GLY PRO THR LYS LYS GLU SEQRES 35 C 571 MET GLY GLN ILE ARG ALA PHE ASP LEU THR THR GLY LYS SEQRES 36 C 571 ALA LYS TRP THR LYS TRP GLU LYS PHE ALA ALA TRP GLY SEQRES 37 C 571 GLY THR LEU TYR THR LYS GLY GLY LEU VAL TRP TYR ALA SEQRES 38 C 571 THR LEU ASP GLY TYR LEU LYS ALA LEU ASP ASN LYS ASP SEQRES 39 C 571 GLY LYS GLU LEU TRP ASN PHE LYS MET PRO SER GLY GLY SEQRES 40 C 571 ILE GLY SER PRO MET THR TYR SER PHE LYS GLY LYS GLN SEQRES 41 C 571 TYR ILE GLY SER MET TYR GLY VAL GLY GLY TRP PRO GLY SEQRES 42 C 571 VAL GLY LEU VAL PHE ASP LEU THR ASP PRO SER ALA GLY SEQRES 43 C 571 LEU GLY ALA VAL GLY ALA PHE ARG GLU LEU GLN ASN HIS SEQRES 44 C 571 THR GLN MET GLY GLY GLY LEU MET VAL PHE SER LEU SEQRES 1 D 69 TYR ASP GLY GLN ASN CYS LYS GLU PRO GLY ASN CYS TRP SEQRES 2 D 69 GLU ASN LYS PRO GLY TYR PRO GLU LYS ILE ALA GLY SER SEQRES 3 D 69 LYS TYR ASP PRO LYS HIS ASP PRO VAL GLU LEU ASN LYS SEQRES 4 D 69 GLN GLU GLU SER ILE LYS ALA MET ASP ALA ARG ASN ALA SEQRES 5 D 69 LYS ARG ILE ALA ASN ALA LYS SER SER GLY ASN PHE VAL SEQRES 6 D 69 PHE ASP VAL LYS HET CA A 702 1 HET PQQ A 701 24 HET CA C 704 1 HET PQQ C 703 24 HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE FORMUL 5 CA 2(CA 2+) FORMUL 6 PQQ 2(C14 H6 N2 O8) FORMUL 9 HOH *936(H2 O) HELIX 1 1 ASP A 1 THR A 10 1 10 HELIX 2 2 ASN A 36 VAL A 40 5 5 HELIX 3 3 ASP A 95 MET A 102 5 8 HELIX 4 4 ASP A 145 GLY A 149 5 5 HELIX 5 5 GLY A 169 GLY A 173 5 5 HELIX 6 6 SER A 197 ARG A 202 1 6 HELIX 7 7 ASN A 211 GLY A 215 5 5 HELIX 8 8 GLY A 218 THR A 223 1 6 HELIX 9 9 ASN A 260 ARG A 264 5 5 HELIX 10 10 ASP A 364 ALA A 368 5 5 HELIX 11 11 GLY A 533 ASP A 539 1 7 HELIX 12 12 ALA A 545 HIS A 559 1 15 HELIX 13 13 ASP B 33 GLY B 62 1 30 HELIX 14 14 ASP C 1 THR C 10 1 10 HELIX 15 15 ASN C 36 VAL C 40 5 5 HELIX 16 16 ASP C 95 MET C 102 5 8 HELIX 17 17 ASP C 145 GLY C 149 5 5 HELIX 18 18 GLY C 169 GLY C 173 5 5 HELIX 19 19 SER C 197 ARG C 202 1 6 HELIX 20 20 ASN C 211 GLY C 215 5 5 HELIX 21 21 GLY C 218 THR C 223 1 6 HELIX 22 22 ASN C 260 ARG C 264 5 5 HELIX 23 23 ASP C 364 ALA C 368 5 5 HELIX 24 24 GLY C 533 ASP C 539 1 7 HELIX 25 25 ALA C 545 HIS C 559 1 15 HELIX 26 26 ASP D 33 GLY D 62 1 30 SHEET 1 A 4 LEU A 59 ILE A 61 0 SHEET 2 A 4 ASP A 63 ALA A 70 -1 SHEET 3 A 4 ASN A 73 LEU A 80 -1 SHEET 4 A 4 VAL A 87 HIS A 90 -1 SHEET 1 B 4 ALA A 112 GLY A 114 0 SHEET 2 B 4 GLY A 116 GLN A 122 -1 SHEET 3 B 4 GLY A 125 ALA A 132 -1 SHEET 4 B 4 GLY A 135 VAL A 143 -1 SHEET 1 C 4 PHE A 157 ALA A 159 0 SHEET 2 C 4 ASP A 161 MET A 165 -1 SHEET 3 C 4 GLY A 176 LEU A 183 -1 SHEET 4 C 4 GLY A 186 ALA A 194 -1 SHEET 1 D 4 ALA A 241 PRO A 244 0 SHEET 2 D 4 ASN A 247 GLY A 254 -1 SHEET 3 D 4 MET A 272 LEU A 279 -1 SHEET 4 D 4 GLY A 282 LYS A 290 -1 SHEET 1 E 4 VAL A 305 VAL A 311 0 SHEET 2 E 4 LYS A 314 ASP A 323 -1 SHEET 3 E 4 GLY A 326 ARG A 333 -1 SHEET 4 E 4 GLY A 336 VAL A 344 -1 SHEET 1 F 4 SER A 392 ASP A 394 0 SHEET 2 F 4 ARG A 398 HIS A 406 -1 SHEET 3 F 4 MET A 443 ASP A 450 -1 SHEET 4 F 4 GLY A 454 LYS A 463 -1 SHEET 1 G 4 LEU A 471 THR A 473 0 SHEET 2 G 4 GLY A 476 THR A 482 -1 SHEET 3 G 4 GLY A 485 ASN A 492 -1 SHEET 4 G 4 GLY A 495 MET A 503 -1 SHEET 1 H 4 LYS A 41 THR A 48 0 SHEET 2 H 4 GLY A 564 SER A 570 -1 SHEET 3 H 4 LYS A 519 TYR A 526 -1 SHEET 4 H 4 MET A 512 PHE A 516 -1 SHEET 1 I 2 ASN A 349 ASP A 355 0 SHEET 2 I 2 GLY A 359 ASP A 364 -1 SHEET 1 J 3 GLY A 375 SER A 381 0 SHEET 2 J 3 HIS A 406 PHE A 414 -1 SHEET 3 J 3 GLY A 426 GLY A 434 -1 SHEET 1 K 4 LEU C 59 ILE C 61 0 SHEET 2 K 4 ASP C 63 ALA C 70 -1 SHEET 3 K 4 ASN C 73 LEU C 80 -1 SHEET 4 K 4 VAL C 87 HIS C 90 -1 SHEET 1 L 4 ALA C 112 GLY C 114 0 SHEET 2 L 4 GLY C 116 GLN C 122 -1 SHEET 3 L 4 GLY C 125 ALA C 132 -1 SHEET 4 L 4 GLY C 135 VAL C 143 -1 SHEET 1 M 4 PHE C 157 ALA C 159 0 SHEET 2 M 4 ASP C 161 MET C 165 -1 SHEET 3 M 4 GLY C 176 LEU C 183 -1 SHEET 4 M 4 GLY C 186 ALA C 194 -1 SHEET 1 N 4 ALA C 241 PRO C 244 0 SHEET 2 N 4 ASN C 247 GLY C 254 -1 SHEET 3 N 4 MET C 272 LEU C 279 -1 SHEET 4 N 4 GLY C 282 LYS C 290 -1 SHEET 1 O 4 VAL C 305 VAL C 311 0 SHEET 2 O 4 LYS C 314 ASP C 323 -1 SHEET 3 O 4 GLY C 326 ARG C 333 -1 SHEET 4 O 4 GLY C 336 VAL C 344 -1 SHEET 1 P 4 SER C 392 ASP C 394 0 SHEET 2 P 4 ARG C 398 HIS C 406 -1 SHEET 3 P 4 MET C 443 ASP C 450 -1 SHEET 4 P 4 GLY C 454 LYS C 463 -1 SHEET 1 Q 4 LEU C 471 THR C 473 0 SHEET 2 Q 4 GLY C 476 THR C 482 -1 SHEET 3 Q 4 GLY C 485 ASN C 492 -1 SHEET 4 Q 4 GLY C 495 MET C 503 -1 SHEET 1 R 4 LYS C 41 THR C 48 0 SHEET 2 R 4 GLY C 564 SER C 570 -1 SHEET 3 R 4 LYS C 519 TYR C 526 -1 SHEET 4 R 4 MET C 512 PHE C 516 -1 SHEET 1 S 2 ASN C 349 ASP C 355 0 SHEET 2 S 2 GLY C 359 ASP C 364 -1 SHEET 1 T 3 GLY C 375 SER C 381 0 SHEET 2 T 3 HIS C 406 PHE C 414 -1 SHEET 3 T 3 GLY C 426 GLY C 434 -1 SSBOND 1 CYS A 103 CYS A 104 1555 1555 2.05 SSBOND 2 CYS A 144 CYS A 167 1555 1555 2.03 SSBOND 3 CYS A 379 CYS A 408 1555 1555 2.03 SSBOND 4 CYS B 6 CYS B 12 1555 1555 2.03 SSBOND 5 CYS C 103 CYS C 104 1555 1555 2.05 SSBOND 6 CYS C 144 CYS C 167 1555 1555 2.03 SSBOND 7 CYS C 379 CYS C 408 1555 1555 2.03 SSBOND 8 CYS D 6 CYS D 12 1555 1555 2.03 LINK OE2 GLU A 171 CA CA A 702 1555 1555 2.64 LINK OE1 GLU A 171 CA CA A 702 1555 1555 2.79 LINK OD1 ASN A 255 CA CA A 702 1555 1555 2.54 LINK OD2 ASP A 297 CA CA A 702 1555 1555 3.10 LINK O5 PQQ A 701 CA CA A 702 1555 1555 2.64 LINK N6 PQQ A 701 CA CA A 702 1555 1555 2.89 LINK O7A PQQ A 701 CA CA A 702 1555 1555 2.95 LINK OE2 GLU C 171 CA CA C 704 1555 1555 2.59 LINK OE1 GLU C 171 CA CA C 704 1555 1555 2.71 LINK OD1 ASN C 255 CA CA C 704 1555 1555 2.57 LINK OD2 ASP C 297 CA CA C 704 1555 1555 3.23 LINK O5 PQQ C 703 CA CA C 704 1555 1555 2.65 LINK N6 PQQ C 703 CA CA C 704 1555 1555 2.80 LINK O7A PQQ C 703 CA CA C 704 1555 1555 2.85 CISPEP 1 PHE A 71 PRO A 72 0 0.40 CISPEP 2 ALA A 257 PRO A 258 0 -0.14 CISPEP 3 LYS A 269 TRP A 270 0 3.26 CISPEP 4 CYS A 379 PRO A 380 0 -0.06 CISPEP 5 PHE C 71 PRO C 72 0 0.44 CISPEP 6 ALA C 257 PRO C 258 0 -0.18 CISPEP 7 LYS C 269 TRP C 270 0 3.58 CISPEP 8 CYS C 379 PRO C 380 0 0.11 SITE 1 AC1 4 GLU A 171 ASN A 255 ASP A 297 PQQ A 701 SITE 1 AC2 4 GLU C 171 ASN C 255 ASP C 297 PQQ C 703 SITE 1 AC3 22 GLU A 55 CYS A 103 CYS A 104 VAL A 107 SITE 2 AC3 22 ARG A 109 THR A 153 SER A 168 GLY A 169 SITE 3 AC3 22 ALA A 170 GLU A 171 THR A 235 TRP A 237 SITE 4 AC3 22 ASN A 255 ARG A 324 ASN A 387 TRP A 467 SITE 5 AC3 22 GLY A 530 TRP A 531 CA A 702 HOH A1100 SITE 6 AC3 22 HOH A1131 HOH A2001 SITE 1 AC4 22 GLU C 55 CYS C 103 CYS C 104 VAL C 107 SITE 2 AC4 22 ARG C 109 THR C 153 SER C 168 GLY C 169 SITE 3 AC4 22 ALA C 170 GLU C 171 THR C 235 TRP C 237 SITE 4 AC4 22 ASN C 255 ARG C 324 ASN C 387 TRP C 467 SITE 5 AC4 22 GLY C 530 TRP C 531 CA C 704 HOH C1013 SITE 6 AC4 22 HOH C1041 HOH C2002 CRYST1 204.205 62.630 124.511 90.00 125.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004897 0.000000 0.003447 0.00000 SCALE2 0.000000 0.015967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009821 0.00000