HEADER LUMINESCENT PROTEIN 27-JUL-05 2AHA TITLE CRYSTAL STRUCTURE ANALYSIS OF A RATE-ENHANCED VARIANT OF REDOX- TITLE 2 SENSITIVE GREEN FLUORESCENT PROTEIN IN THE REDUCED FORM, ROGFP1-R8. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GFP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-B KEYWDS BETA BARREL, CHROMOPHORE, DISULFIDE, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.B.CANNON,S.J.REMINGTON REVDAT 8 15-NOV-23 2AHA 1 REMARK LINK ATOM REVDAT 7 23-AUG-23 2AHA 1 REMARK REVDAT 6 20-OCT-21 2AHA 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2AHA 1 REMARK REVDAT 4 21-JAN-15 2AHA 1 HET HETATM HETNAM LINK REVDAT 4 2 1 MODRES SEQRES VERSN REVDAT 3 30-JUN-09 2AHA 1 SEQADV TITLE REVDAT 2 24-FEB-09 2AHA 1 VERSN REVDAT 1 21-MAR-06 2AHA 0 JRNL AUTH M.B.CANNON,S.J.REMINGTON JRNL TITL RE-ENGINEERING REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN FOR JRNL TITL 2 IMPROVED RESPONSE RATE. JRNL REF PROTEIN SCI. V. 15 45 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16322566 JRNL DOI 10.1110/PS.051734306 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 45346 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4530 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2040 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 45664 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.600 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 150.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 50.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.5 REMARK 200 STARTING MODEL: PDB ENTRY 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM PHOSPHATE/CITRATE, AMMONIUM REMARK 280 SULFATE, DTT, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.59300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.18600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.18600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.59300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 MET B 1 REMARK 465 THR B 230 REMARK 465 HIS B 231 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 79 CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 107 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS A 131 CB CG CD CE NZ REMARK 470 ASN A 144 OD1 ND2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CB CG CD OE1 NE2 REMARK 470 LYS A 158 CB CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 166 CD CE NZ REMARK 470 ARG A 168 CD NE CZ NH1 NH2 REMARK 470 ASP A 173 CB CG OD1 OD2 REMARK 470 SER A 175 CB OG REMARK 470 LEU A 178 CG CD1 CD2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 131 CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 LYS B 140 NZ REMARK 470 ASN B 146 CG OD1 ND2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLN B 157 CB CG CD OE1 NE2 REMARK 470 LYS B 158 CB CG CD CE NZ REMARK 470 LYS B 162 CD CE NZ REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 ASP B 190 CG OD1 OD2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C PHE B 64 N1 GYS B 66 1.30 REMARK 500 C PHE A 64 N1 GYS A 66 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 5 CD GLU A 5 OE2 0.110 REMARK 500 GLU A 32 CD GLU A 32 OE2 0.085 REMARK 500 GLU A 90 CD GLU A 90 OE2 0.091 REMARK 500 GLU A 124 CD GLU A 124 OE2 0.080 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.079 REMARK 500 GLU A 142 CD GLU A 142 OE2 0.076 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.076 REMARK 500 GLU B 5 CD GLU B 5 OE2 0.072 REMARK 500 GLU B 124 CD GLU B 124 OE2 0.081 REMARK 500 GLU B 142 CD GLU B 142 OE2 0.068 REMARK 500 GLU B 213 CD GLU B 213 OE2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 41 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 102 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 GLU A 124 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 CYS A 204 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP B 41 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 41 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP B 76 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 76 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 102 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP B 103 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP B 117 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR B 145 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP B 155 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 180 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 197 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 197 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 210 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -69.51 5.36 REMARK 500 GLN A 69 -7.40 -57.21 REMARK 500 ILE A 136 -71.46 -78.19 REMARK 500 GLN A 157 -74.59 -42.88 REMARK 500 SER A 175 -110.96 -84.29 REMARK 500 ILE B 136 -72.73 -73.98 REMARK 500 HIS B 148 -169.37 -176.38 REMARK 500 SER B 175 -177.67 -68.95 REMARK 500 HIS B 199 -160.98 -160.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 241 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JC0 RELATED DB: PDB REMARK 900 ROGFP2 IN THE REDUCED FORM. REMARK 900 RELATED ID: 1JC1 RELATED DB: PDB REMARK 900 ROGFP2 IN THE OXIDIZED FORM. REMARK 900 RELATED ID: 2AH8 RELATED DB: PDB DBREF 2AHA A 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 2AHA B 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 2AHA ASP A 41 UNP P42212 LYS 41 ENGINEERED MUTATION SEQADV 2AHA SER A 48 UNP P42212 CYS 48 ENGINEERED MUTATION SEQADV 2AHA GYS A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2AHA GYS A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2AHA GYS A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2AHA ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2AHA CYS A 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 2AHA CYS A 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 2AHA ARG A 223 UNP P42212 PHE 223 ENGINEERED MUTATION SEQADV 2AHA ASP B 41 UNP P42212 LYS 41 ENGINEERED MUTATION SEQADV 2AHA SER B 48 UNP P42212 CYS 48 ENGINEERED MUTATION SEQADV 2AHA GYS B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2AHA GYS B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2AHA GYS B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2AHA ARG B 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2AHA CYS B 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 2AHA CYS B 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 2AHA ARG B 223 UNP P42212 PHE 223 ENGINEERED MUTATION SEQRES 1 A 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY ASP LEU THR LEU LYS PHE ILE SER THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN CYS HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU SER THR CYS SER ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU ARG SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 236 TYR LYS SEQRES 1 B 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 236 GLY ASP LEU THR LEU LYS PHE ILE SER THR THR GLY LYS SEQRES 5 B 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE GYS SEQRES 6 B 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 B 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 236 ASN CYS HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 236 ASN HIS TYR LEU SER THR CYS SER ALA LEU SER LYS ASP SEQRES 17 B 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU ARG SEQRES 18 B 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 B 236 TYR LYS MODRES 2AHA GYS A 66 SER MODRES 2AHA GYS A 66 TYR MODRES 2AHA GYS A 66 GLY MODRES 2AHA GYS B 66 SER MODRES 2AHA GYS B 66 TYR MODRES 2AHA GYS B 66 GLY HET GYS A 66 21 HET GYS B 66 21 HET SO4 A 239 5 HET SO4 B 239 5 HET SO4 B 240 5 HET SO4 B 241 5 HETNAM GYS [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4- HETNAM 2 GYS HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 GYS YL]ACETIC ACID HETNAM SO4 SULFATE ION HETSYN GYS CHROMOPHORE (SER-TYR-GLY) FORMUL 1 GYS 2(C14 H15 N3 O5) FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *191(H2 O) HELIX 1 1 GLY A 4 THR A 9 5 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 SER B 2 LEU B 7 1 6 HELIX 7 7 PRO B 56 VAL B 61 5 6 HELIX 8 8 VAL B 68 SER B 72 5 5 HELIX 9 9 PRO B 75 HIS B 81 5 7 HELIX 10 10 ASP B 82 ALA B 87 1 6 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O VAL A 29 N LEU A 18 SHEET 3 A12 ASP A 41 SER A 48 -1 O ASP A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 A12 GLY A 160 ASN A 170 -1 O LYS A 162 N MET A 153 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 B12 VAL B 11 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O GLY B 35 N VAL B 12 SHEET 3 B12 ASP B 41 SER B 48 -1 O ILE B 47 N SER B 30 SHEET 4 B12 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 B12 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 B12 CYS B 147 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 B12 GLY B 160 ASN B 170 -1 O LYS B 162 N MET B 153 SHEET 8 B12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 B12 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 B12 ASN B 105 GLU B 115 -1 O ALA B 110 N GLN B 94 SHEET 11 B12 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 B12 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C3 GYS A 66 N VAL A 68 1555 1555 1.32 LINK C3 GYS B 66 N VAL B 68 1555 1555 1.31 CISPEP 1 MET A 88 PRO A 89 0 0.77 CISPEP 2 MET B 88 PRO B 89 0 5.20 SITE 1 AC1 8 VAL A 55 PRO A 56 TRP A 57 PRO A 58 SITE 2 AC1 8 HIS A 139 HOH A 266 HOH A 304 HOH A 312 SITE 1 AC2 4 PRO B 56 TRP B 57 HIS B 139 HOH B 295 SITE 1 AC3 4 LYS B 101 ASP B 102 HOH B 253 HOH B 304 SITE 1 AC4 2 GLY A 116 HIS B 25 CRYST1 79.693 79.693 166.779 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012541 0.007240 0.000000 0.00000 SCALE2 0.000000 0.014481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005993 0.00000