HEADER HYDROLASE 29-JUL-05 2AI6 TITLE SOLUTION STRUCTURE OF HUMAN PHOSPHOHISTIDINE PHOSPHATASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14 KDA PHOSPHOHISTIDINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOHISTIDINE PHOSPHATASE 1, PROTEIN JANUS-A HOMOLOG; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA/BETA ARCHITECTURE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR W.GONG,G.CUI,C.JIN,B.XIA REVDAT 5 01-MAY-24 2AI6 1 REMARK REVDAT 4 26-FEB-20 2AI6 1 REMARK REVDAT 3 10-MAR-09 2AI6 1 JRNL REVDAT 2 24-FEB-09 2AI6 1 VERSN REVDAT 1 17-OCT-06 2AI6 0 JRNL AUTH W.GONG,Y.LI,G.CUI,J.HU,H.FANG,C.JIN,B.XIA JRNL TITL SOLUTION STRUCTURE AND CATALYTIC MECHANISM OF HUMAN PROTEIN JRNL TITL 2 HISTIDINE PHOSPHATASE 1. JRNL REF BIOCHEM.J. V. 418 337 2009 JRNL REFN ISSN 0264-6021 JRNL PMID 18991813 JRNL DOI 10.1042/BJ20081571 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE CYANA 2.0, AMBER 7.0 REMARK 3 AUTHORS : F. DELAGLIO, S. GRZESIEK, G. W. VUISTER, G. ZHU, REMARK 3 J. PFEIFER AND A. BAX (NMRPIPE), DAVID A. CASE, REMARK 3 ET. AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS PERFORMED BY REMARK 3 DYANA, SIMULATED ANNEALING PERFORMED BY AMBER REMARK 4 REMARK 4 2AI6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM PHPT1, 50MM PBS, 50MM NACL, REMARK 210 30MM DTT; 90%H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB,CBCA(CO)NH; REMARK 210 HNCO,HN(CA)CO; HC(C)H COSY; HC(C) REMARK 210 H TOCSY; 3D_13C-SEPARATED_NOESY; REMARK 210 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0, DYANA CYANA2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 GLU A 42 OE1 - CD - OE2 ANGL. DEV. = -45.1 DEGREES REMARK 500 1 GLU A 42 CG - CD - OE1 ANGL. DEV. = -35.4 DEGREES REMARK 500 1 GLU A 42 CG - CD - OE2 ANGL. DEV. = 42.7 DEGREES REMARK 500 8 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 9 ARG A 78 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 13 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 17 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 18 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 16 16.58 -148.32 REMARK 500 1 SER A 29 98.30 -65.88 REMARK 500 1 ALA A 30 18.02 -148.52 REMARK 500 1 ARG A 32 21.54 47.23 REMARK 500 1 ASP A 115 -75.61 -143.74 REMARK 500 1 TYR A 116 -74.08 -157.70 REMARK 500 1 ASN A 122 41.22 -85.87 REMARK 500 2 PRO A 10 106.95 -56.74 REMARK 500 2 SER A 16 40.26 -74.27 REMARK 500 2 SER A 29 85.05 -66.52 REMARK 500 2 ALA A 30 13.14 -141.19 REMARK 500 2 ASP A 85 21.80 -162.53 REMARK 500 2 LYS A 86 18.36 56.62 REMARK 500 3 ALA A 30 25.02 -146.66 REMARK 500 3 ARG A 32 25.87 43.05 REMARK 500 3 SER A 83 17.42 -69.19 REMARK 500 3 GLN A 84 -18.69 -149.66 REMARK 500 3 ASN A 122 42.14 -81.98 REMARK 500 4 SER A 16 3.18 -53.99 REMARK 500 4 ARG A 32 24.89 43.66 REMARK 500 4 ASP A 85 27.14 -143.09 REMARK 500 4 LYS A 86 77.48 38.09 REMARK 500 5 SER A 29 80.14 -68.69 REMARK 500 5 ARG A 32 22.87 45.92 REMARK 500 5 ALA A 37 -167.96 57.16 REMARK 500 5 TYR A 113 64.70 38.84 REMARK 500 5 ASP A 115 -68.37 -129.67 REMARK 500 5 TYR A 116 -50.69 -165.07 REMARK 500 5 ASN A 122 47.89 -90.24 REMARK 500 6 PRO A 10 109.91 -55.40 REMARK 500 6 SER A 16 -2.84 -59.71 REMARK 500 6 ALA A 30 17.39 -152.01 REMARK 500 6 HIS A 81 -50.56 -157.48 REMARK 500 6 GLN A 82 22.95 47.42 REMARK 500 6 SER A 83 27.85 49.54 REMARK 500 6 HIS A 102 -30.78 58.21 REMARK 500 6 ASN A 122 33.42 -84.33 REMARK 500 7 SER A 29 95.47 -66.57 REMARK 500 7 ALA A 30 11.78 -143.17 REMARK 500 7 ARG A 32 22.07 47.65 REMARK 500 7 ASP A 115 -49.52 -153.76 REMARK 500 7 ASN A 122 33.15 -88.22 REMARK 500 8 PRO A 10 99.35 -58.41 REMARK 500 8 SER A 16 -177.55 54.95 REMARK 500 8 SER A 29 97.56 -65.81 REMARK 500 8 ALA A 30 22.60 -151.07 REMARK 500 8 ARG A 32 26.75 44.93 REMARK 500 8 ASP A 115 -52.16 -151.05 REMARK 500 9 ASP A 15 61.02 -153.71 REMARK 500 9 ALA A 30 15.14 -152.32 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 22 0.08 SIDE CHAIN REMARK 500 3 TYR A 22 0.07 SIDE CHAIN REMARK 500 5 TYR A 22 0.10 SIDE CHAIN REMARK 500 5 ARG A 45 0.09 SIDE CHAIN REMARK 500 7 ARG A 45 0.10 SIDE CHAIN REMARK 500 9 ARG A 45 0.10 SIDE CHAIN REMARK 500 12 TYR A 22 0.09 SIDE CHAIN REMARK 500 13 ARG A 45 0.09 SIDE CHAIN REMARK 500 14 TYR A 22 0.08 SIDE CHAIN REMARK 500 16 ARG A 45 0.09 SIDE CHAIN REMARK 500 17 ARG A 45 0.10 SIDE CHAIN REMARK 500 18 TYR A 22 0.13 SIDE CHAIN REMARK 500 19 TYR A 22 0.07 SIDE CHAIN REMARK 500 21 TYR A 22 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6625 RELATED DB: BMRB REMARK 900 ALL ATOM CHEMICAL SHIFT ASSIGNMENT DBREF 2AI6 A 1 125 UNP Q9NRX4 PHP14_HUMAN 1 125 SEQRES 1 A 125 MET ALA VAL ALA ASP LEU ALA LEU ILE PRO ASP VAL ASP SEQRES 2 A 125 ILE ASP SER ASP GLY VAL PHE LYS TYR VAL LEU ILE ARG SEQRES 3 A 125 VAL HIS SER ALA PRO ARG SER GLY ALA PRO ALA ALA GLU SEQRES 4 A 125 SER LYS GLU ILE VAL ARG GLY TYR LYS TRP ALA GLU TYR SEQRES 5 A 125 HIS ALA ASP ILE TYR ASP LYS VAL SER GLY ASP MET GLN SEQRES 6 A 125 LYS GLN GLY CYS ASP CYS GLU CYS LEU GLY GLY GLY ARG SEQRES 7 A 125 ILE SER HIS GLN SER GLN ASP LYS LYS ILE HIS VAL TYR SEQRES 8 A 125 GLY TYR SER MET ALA TYR GLY PRO ALA GLN HIS ALA ILE SEQRES 9 A 125 SER THR GLU LYS ILE LYS ALA LYS TYR PRO ASP TYR GLU SEQRES 10 A 125 VAL THR TRP ALA ASN ASP GLY TYR HELIX 1 1 ALA A 30 GLY A 34 5 5 HELIX 2 2 TYR A 52 GLY A 68 1 17 HELIX 3 3 GLN A 101 TYR A 113 1 13 SHEET 1 A 6 VAL A 12 ILE A 14 0 SHEET 2 A 6 SER A 40 TYR A 47 1 O VAL A 44 N ASP A 13 SHEET 3 A 6 VAL A 19 HIS A 28 -1 N VAL A 27 O LYS A 41 SHEET 4 A 6 ASP A 70 GLN A 82 -1 O ILE A 79 N PHE A 20 SHEET 5 A 6 ASP A 85 TYR A 91 -1 O TYR A 91 N ARG A 78 SHEET 6 A 6 VAL A 118 TRP A 120 1 O THR A 119 N VAL A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1