HEADER TRANSPORT PROTEIN 01-AUG-05 2AIV TITLE MULTIPLE CONFORMATIONS IN THE LIGAND-BINDING SITE OF THE YEAST NUCLEAR TITLE 2 PORE TARGETING DOMAIN OF NUP116P COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGMENT OF NUCLEOPORIN NUP116/NSP116; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 967-1113; COMPND 5 SYNONYM: NUP116P; NUCLEAR PORE PROTEIN NUP116/NSP116; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT INTERACTING WITH NUP82 NPC SUBCOMPLEX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NUP116, NSP116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: GATEWAY; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST 15 KEYWDS BETA SANDWICH, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.A.ROBINSON,S.PARK,Z.-Y.J.SUN,P.SILVER,G.WAGNER,J.HOGLE REVDAT 5 01-MAY-24 2AIV 1 SEQADV REVDAT 4 24-JAN-18 2AIV 1 AUTHOR JRNL REMARK REVDAT 3 24-FEB-09 2AIV 1 VERSN REVDAT 2 25-OCT-05 2AIV 1 JRNL REVDAT 1 16-AUG-05 2AIV 0 JRNL AUTH M.A.ROBINSON,S.PARK,Z.-Y.J.SUN,P.A.SILVER,G.WAGNER,J.M.HOGLE JRNL TITL MULTIPLE CONFORMATIONS IN THE LIGAND-BINDING SITE OF THE JRNL TITL 2 YEAST NUCLEAR PORE-TARGETING DOMAIN OF NUP116P JRNL REF J.BIOL.CHEM. V. 280 35723 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16105837 JRNL DOI 10.1074/JBC.M505068200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, DYANA 1.0 REMARK 3 AUTHORS : BRUNGER, A. (CNS), GUENTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AIV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033945. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM SODIUM-POTASSIUM PHOSPHATE REMARK 210 PH 6.5, 50MM NACL, 1MM DTT REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5-1MM NUP116P U-15N,13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 400 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.0, NMRPIPE JULY 2004 REMARK 210 VERSION REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD12 ILE A 69 H LEU A 73 1.18 REMARK 500 HG2 PRO A 10 HG21 THR A 14 1.19 REMARK 500 HA PHE A 41 HB1 ALA A 87 1.25 REMARK 500 HG LEU A 21 HH21 ARG A 24 1.29 REMARK 500 HA LEU A 21 HE ARG A 24 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 26.36 -67.93 REMARK 500 1 SER A 11 161.05 131.16 REMARK 500 1 PRO A 27 -88.92 -46.30 REMARK 500 1 LYS A 34 -84.75 59.93 REMARK 500 1 ILE A 50 72.35 58.85 REMARK 500 1 PRO A 51 32.02 -94.24 REMARK 500 1 ILE A 59 -25.17 62.07 REMARK 500 1 LYS A 65 -29.68 171.60 REMARK 500 1 ALA A 71 70.74 160.57 REMARK 500 1 LEU A 73 92.72 -69.51 REMARK 500 1 PRO A 74 39.07 -70.22 REMARK 500 1 ARG A 76 94.16 -69.99 REMARK 500 1 TYR A 95 92.92 -69.06 REMARK 500 1 PRO A 96 36.38 -85.78 REMARK 500 1 VAL A 97 168.23 51.05 REMARK 500 1 LYS A 103 93.45 -69.54 REMARK 500 1 PRO A 104 92.75 -52.47 REMARK 500 1 LYS A 106 44.04 -140.58 REMARK 500 1 PRO A 108 34.33 -69.00 REMARK 500 1 ASN A 123 99.39 -66.13 REMARK 500 1 PRO A 124 33.23 -91.02 REMARK 500 1 GLU A 129 -79.75 -90.12 REMARK 500 2 PRO A 2 31.36 -87.51 REMARK 500 2 SER A 11 166.13 139.13 REMARK 500 2 PRO A 27 -85.91 -43.61 REMARK 500 2 TYR A 36 -73.79 -89.43 REMARK 500 2 VAL A 45 91.13 -67.99 REMARK 500 2 ALA A 48 77.76 49.29 REMARK 500 2 PRO A 51 24.94 -65.80 REMARK 500 2 ILE A 59 41.23 -71.24 REMARK 500 2 LYS A 65 -30.05 177.51 REMARK 500 2 ASN A 72 -1.67 64.86 REMARK 500 2 LEU A 73 92.90 -69.92 REMARK 500 2 PRO A 74 31.94 -93.28 REMARK 500 2 PRO A 96 21.55 -64.28 REMARK 500 2 LYS A 106 66.49 -109.69 REMARK 500 2 PRO A 108 45.87 -96.74 REMARK 500 2 ASN A 123 97.04 -68.16 REMARK 500 2 PRO A 124 31.87 -88.89 REMARK 500 2 GLU A 129 -79.81 -90.63 REMARK 500 3 PRO A 2 38.76 -70.42 REMARK 500 3 SER A 11 165.85 139.46 REMARK 500 3 PRO A 27 -84.14 -52.36 REMARK 500 3 LYS A 34 -68.25 66.80 REMARK 500 3 ASP A 46 92.54 -63.56 REMARK 500 3 ILE A 50 83.59 56.18 REMARK 500 3 ILE A 59 19.13 47.02 REMARK 500 3 LYS A 65 -31.14 179.10 REMARK 500 3 ALA A 71 84.95 67.91 REMARK 500 3 LEU A 73 93.01 -68.31 REMARK 500 REMARK 500 THIS ENTRY HAS 287 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2AIV A 3 149 UNP Q02630 NU116_YEAST 967 1113 SEQADV 2AIV GLY A 1 UNP Q02630 CLONING ARTIFACT SEQADV 2AIV PRO A 2 UNP Q02630 CLONING ARTIFACT SEQRES 1 A 149 GLY PRO ASN GLU ASN TYR TYR ILE SER PRO SER LEU ASP SEQRES 2 A 149 THR LEU SER SER TYR SER LEU LEU GLN LEU ARG LYS VAL SEQRES 3 A 149 PRO HIS LEU VAL VAL GLY HIS LYS SER TYR GLY LYS ILE SEQRES 4 A 149 GLU PHE LEU GLU PRO VAL ASP LEU ALA GLY ILE PRO LEU SEQRES 5 A 149 THR SER LEU GLY GLY VAL ILE ILE THR PHE GLU PRO LYS SEQRES 6 A 149 THR CYS ILE ILE TYR ALA ASN LEU PRO ASN ARG PRO LYS SEQRES 7 A 149 ARG GLY GLU GLY ILE ASN VAL ARG ALA ARG ILE THR CYS SEQRES 8 A 149 PHE ASN CYS TYR PRO VAL ASP LYS SER THR ARG LYS PRO SEQRES 9 A 149 ILE LYS ASP PRO ASN HIS GLN LEU VAL LYS ARG HIS ILE SEQRES 10 A 149 GLU ARG LEU LYS LYS ASN PRO ASN SER LYS PHE GLU SER SEQRES 11 A 149 TYR ASP ALA ASP SER GLY THR TYR VAL PHE ILE VAL ASN SEQRES 12 A 149 HIS ALA ALA GLU GLN THR HELIX 1 1 SER A 11 SER A 17 1 7 HELIX 2 2 SER A 19 LYS A 25 1 7 HELIX 3 3 PRO A 51 GLY A 56 1 6 HELIX 4 4 LEU A 112 ASN A 123 1 12 SHEET 1 A 5 LEU A 29 GLY A 32 0 SHEET 2 A 5 LYS A 38 PHE A 41 -1 O ILE A 39 N VAL A 31 SHEET 3 A 5 ALA A 87 CYS A 91 -1 O ARG A 88 N GLU A 40 SHEET 4 A 5 TYR A 138 ILE A 141 -1 O PHE A 140 N ILE A 89 SHEET 5 A 5 LYS A 127 TYR A 131 -1 N LYS A 127 O ILE A 141 SHEET 1 B 2 THR A 61 PHE A 62 0 SHEET 2 B 2 CYS A 67 ILE A 68 -1 O ILE A 68 N THR A 61 CISPEP 1 SER A 9 PRO A 10 1 5.34 CISPEP 2 SER A 9 PRO A 10 2 5.79 CISPEP 3 SER A 9 PRO A 10 3 4.65 CISPEP 4 SER A 9 PRO A 10 4 5.64 CISPEP 5 SER A 9 PRO A 10 5 5.75 CISPEP 6 SER A 9 PRO A 10 6 5.01 CISPEP 7 SER A 9 PRO A 10 7 4.80 CISPEP 8 SER A 9 PRO A 10 8 5.01 CISPEP 9 SER A 9 PRO A 10 9 6.82 CISPEP 10 SER A 9 PRO A 10 10 5.51 CISPEP 11 SER A 9 PRO A 10 11 6.96 CISPEP 12 SER A 9 PRO A 10 12 6.40 CISPEP 13 SER A 9 PRO A 10 13 7.19 CISPEP 14 SER A 9 PRO A 10 14 5.12 CISPEP 15 SER A 9 PRO A 10 15 7.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1