HEADER TRANSFERASE 01-AUG-05 2AJ6 TITLE CRYSTAL STRUCTURE OF A PUTATIVE GNAT FAMILY ACETYLTRANSFERASE (MW0638) TITLE 2 FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS AT 1.63 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN MW0638; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: NP_645455.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2AJ6 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2AJ6 1 VERSN REVDAT 3 23-MAR-11 2AJ6 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2AJ6 1 VERSN REVDAT 1 09-AUG-05 2AJ6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN MW0638 FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS MW2 AT 1.63 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1034 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1047 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1423 ; 1.586 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2170 ; 1.215 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 5.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;43.896 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;12.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 157 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1165 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 210 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 236 ; 0.304 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 960 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 513 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 597 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 649 ; 2.142 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 253 ; 0.510 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1015 ; 2.909 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 465 ; 5.513 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 404 ; 7.261 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6567 14.3597 13.9026 REMARK 3 T TENSOR REMARK 3 T11: -0.1576 T22: -0.1367 REMARK 3 T33: -0.1562 T12: 0.0118 REMARK 3 T13: -0.0151 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.9834 L22: 2.1993 REMARK 3 L33: 3.5469 L12: 0.1800 REMARK 3 L13: 0.6300 L23: -1.2433 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0647 S13: -0.0372 REMARK 3 S21: -0.1223 S22: -0.0102 S23: 0.0537 REMARK 3 S31: 0.0233 S32: -0.0237 S33: -0.0356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.NO DENSITY OBSERVED FOR RESIDUES 119-147. REMARK 3 3.EXTRA DENSITY OBSERVED BETWEEN RESIDUES 87-92 HAS BEEN MODELED REMARK 3 UNKNOWN LIGAND. HOMOLOGY SEARCHES INDICATE THAT THIS IS A PUTA REMARK 3 COENZYME-A BINDING SITE. 4.ONE SULPHATE GROUP WAS FOUND IN THE REMARK 3 MODEL DURING THE REFINEMEN FROMTHE CRYSTALLIZATION CONDITION REMARK 3 WITH MGSO4. REMARK 4 REMARK 4 2AJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17165 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : 0.55100 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGSO4, 20.0% PEG-3350, NO BUFFER, REMARK 280 PH 5.9, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.02900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.42800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.35800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.02900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.42800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.35800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.02900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.42800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.35800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.02900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.42800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.35800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 177 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ILE A 119 REMARK 465 HIS A 120 REMARK 465 LYS A 121 REMARK 465 ASN A 122 REMARK 465 ASN A 123 REMARK 465 LEU A 124 REMARK 465 PRO A 125 REMARK 465 MSE A 126 REMARK 465 ILE A 127 REMARK 465 SER A 128 REMARK 465 LEU A 129 REMARK 465 ASN A 130 REMARK 465 LYS A 131 REMARK 465 ASP A 132 REMARK 465 LEU A 133 REMARK 465 GLY A 134 REMARK 465 TYR A 135 REMARK 465 GLN A 136 REMARK 465 VAL A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 VAL A 140 REMARK 465 LYS A 141 REMARK 465 MSE A 142 REMARK 465 TYR A 143 REMARK 465 LYS A 144 REMARK 465 ASP A 145 REMARK 465 ILE A 146 REMARK 465 ASP A 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 34 CD CE NZ REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 76 CE NZ REMARK 470 ILE A 115 CG1 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 1 CB MSE A 1 CG 0.219 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 32 CA - CB - SG ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 28 68.85 -104.64 REMARK 500 HIS A 50 -159.23 -98.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 149 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358652 RELATED DB: TARGETDB DBREF 2AJ6 A 1 147 UNP Q8NXQ8 Q8NXQ8_STAAW 1 147 SEQADV 2AJ6 MSE A -11 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 GLY A -10 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 SER A -9 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 ASP A -8 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 LYS A -7 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 ILE A -6 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A -5 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A -4 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A -3 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A -2 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A -1 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 HIS A 0 UNP Q8NXQ8 EXPRESSION TAG SEQADV 2AJ6 MSE A 1 UNP Q8NXQ8 MET 1 MODIFIED RESIDUE SEQADV 2AJ6 MSE A 43 UNP Q8NXQ8 MET 43 MODIFIED RESIDUE SEQADV 2AJ6 MSE A 78 UNP Q8NXQ8 MET 78 MODIFIED RESIDUE SEQADV 2AJ6 MSE A 110 UNP Q8NXQ8 MET 110 MODIFIED RESIDUE SEQADV 2AJ6 MSE A 126 UNP Q8NXQ8 MET 126 MODIFIED RESIDUE SEQADV 2AJ6 MSE A 142 UNP Q8NXQ8 MET 142 MODIFIED RESIDUE SEQRES 1 A 159 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 159 ARG THR LEU ASN LYS ASP GLU HIS ASN TYR ILE LYS GLN SEQRES 3 A 159 ILE ALA ASN ILE HIS GLU THR LEU LEU SER GLN VAL GLU SEQRES 4 A 159 SER ASN TYR LYS CYS THR LYS LEU SER ILE ALA LEU ARG SEQRES 5 A 159 TYR GLU MSE ILE CYS SER ARG LEU GLU HIS THR ASN ASP SEQRES 6 A 159 LYS ILE TYR ILE TYR GLU ASN GLU GLY GLN LEU ILE ALA SEQRES 7 A 159 PHE ILE TRP GLY HIS PHE SER ASN GLU LYS SER MSE VAL SEQRES 8 A 159 ASN ILE GLU LEU LEU TYR VAL GLU PRO GLN PHE ARG LYS SEQRES 9 A 159 LEU GLY ILE ALA THR GLN LEU LYS ILE ALA LEU GLU LYS SEQRES 10 A 159 TRP ALA LYS THR MSE ASN ALA LYS ARG ILE SER ASN THR SEQRES 11 A 159 ILE HIS LYS ASN ASN LEU PRO MSE ILE SER LEU ASN LYS SEQRES 12 A 159 ASP LEU GLY TYR GLN VAL SER HIS VAL LYS MSE TYR LYS SEQRES 13 A 159 ASP ILE ASP MODRES 2AJ6 MSE A 1 MET SELENOMETHIONINE MODRES 2AJ6 MSE A 43 MET SELENOMETHIONINE MODRES 2AJ6 MSE A 78 MET SELENOMETHIONINE MODRES 2AJ6 MSE A 110 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 43 8 HET MSE A 78 8 HET MSE A 110 13 HET SO4 A 148 5 HET UNL A 149 10 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 4 HOH *122(H2 O) HELIX 1 1 GLU A 8 VAL A 26 1 19 HELIX 2 2 THR A 33 HIS A 50 1 18 HELIX 3 3 PRO A 88 ARG A 91 5 4 HELIX 4 4 GLY A 94 MSE A 110 1 17 SHEET 1 A 4 MSE A 1 THR A 3 0 SHEET 2 A 4 ASP A 53 ASN A 60 -1 O ILE A 57 N ARG A 2 SHEET 3 A 4 GLN A 63 SER A 73 -1 O GLY A 70 N LYS A 54 SHEET 4 A 4 MSE A 78 VAL A 86 -1 O ASN A 80 N HIS A 71 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ARG A 2 1555 1555 1.32 LINK C GLU A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N ILE A 44 1555 1555 1.33 LINK C SER A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N VAL A 79 1555 1555 1.33 LINK C THR A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N ASN A 111 1555 1555 1.33 SITE 1 AC1 8 TYR A 85 PRO A 88 ARG A 91 ARG A 114 SITE 2 AC1 8 SER A 116 ASN A 117 HOH A 190 HOH A 248 SITE 1 AC2 12 LYS A 34 TYR A 85 VAL A 86 ARG A 91 SITE 2 AC2 12 LYS A 92 LEU A 93 GLY A 94 ILE A 95 SITE 3 AC2 12 ALA A 96 THR A 97 HOH A 154 HOH A 228 CRYST1 40.058 74.856 90.716 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011020 0.00000