HEADER LIGASE 02-AUG-05 2AJI TITLE CRYSTAL STRUCTURE OF THE EDITING DOMAIN OF E. COLI LEUCYL-TRNA TITLE 2 SYNTHETASE COMPLEXES WITH ISOLEUCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 228-413; COMPND 5 SYNONYM: LEUCINE--TRNA LIGASE, LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3E-HIS KEYWDS EDITING DOMAIN, LEUCYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,J.LIAO,B.ZHU,E.D.WANG,J.DING REVDAT 5 13-MAR-24 2AJI 1 REMARK SEQADV REVDAT 4 11-OCT-17 2AJI 1 REMARK REVDAT 3 24-FEB-09 2AJI 1 VERSN REVDAT 2 21-FEB-06 2AJI 1 JRNL AUTHOR REVDAT 1 24-JAN-06 2AJI 0 JRNL AUTH Y.LIU,J.LIAO,B.ZHU,E.D.WANG,J.DING JRNL TITL CRYSTAL STRUCTURES OF THE EDITING DOMAIN OF ESCHERICHIA COLI JRNL TITL 2 LEUCYL-TRNA SYNTHETASE AND ITS COMPLEXES WITH MET AND ILE JRNL TITL 3 REVEAL A LOCK-AND-KEY MECHANISM FOR AMINO ACID JRNL TITL 4 DISCRIMINATION JRNL REF BIOCHEM.J. V. 394 399 2006 JRNL REFN ISSN 0264-6021 JRNL PMID 16277600 JRNL DOI 10.1042/BJ20051249 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 7329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : -3.31000 REMARK 3 B12 (A**2) : 1.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.585 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.424 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.952 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2759 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3751 ; 1.170 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2136 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1253 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1798 ; 0.522 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2853 ; 0.990 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 961 ; 1.105 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 898 ; 2.039 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000033967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7726 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, PH 9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.51150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.51150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.51150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.51150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.51150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.51150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 ALA A 225 REMARK 465 MET A 226 REMARK 465 GLY A 227 REMARK 465 MET B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 ALA B 225 REMARK 465 MET B 226 REMARK 465 GLY B 227 REMARK 465 ASN B 287 REMARK 465 THR B 288 REMARK 465 LYS B 289 REMARK 465 VAL B 290 REMARK 465 ALA B 291 REMARK 465 GLU B 292 REMARK 465 ALA B 293 REMARK 465 GLU B 294 REMARK 465 MET B 295 REMARK 465 ALA B 296 REMARK 465 VAL B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 ASP B 240 CG OD1 OD2 REMARK 470 THR B 297 OG1 CG2 REMARK 470 MET B 298 CG SD CE REMARK 470 GLN B 372 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 267 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 391 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 345 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 296 0.11 -67.80 REMARK 500 HIS A 341 11.95 -148.92 REMARK 500 GLU A 377 150.16 -45.21 REMARK 500 TYR B 330 18.36 52.27 REMARK 500 HIS B 341 27.14 -142.46 REMARK 500 ALA B 362 170.94 -47.97 REMARK 500 HIS B 392 -38.98 -36.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ILE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ILE B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AJG RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 2AJH RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH METHIONINE DBREF 2AJI A 228 413 UNP P07813 SYL_ECOLI 228 413 DBREF 2AJI B 228 413 UNP P07813 SYL_ECOLI 228 413 SEQADV 2AJI MET A 218 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 219 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 220 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 221 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 222 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 223 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS A 224 UNP P07813 EXPRESSION TAG SEQADV 2AJI ALA A 225 UNP P07813 EXPRESSION TAG SEQADV 2AJI MET A 226 UNP P07813 EXPRESSION TAG SEQADV 2AJI GLY A 227 UNP P07813 EXPRESSION TAG SEQADV 2AJI MET B 218 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 219 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 220 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 221 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 222 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 223 UNP P07813 EXPRESSION TAG SEQADV 2AJI HIS B 224 UNP P07813 EXPRESSION TAG SEQADV 2AJI ALA B 225 UNP P07813 EXPRESSION TAG SEQADV 2AJI MET B 226 UNP P07813 EXPRESSION TAG SEQADV 2AJI GLY B 227 UNP P07813 EXPRESSION TAG SEQRES 1 A 196 MET HIS HIS HIS HIS HIS HIS ALA MET GLY GLU GLY VAL SEQRES 2 A 196 GLU ILE THR PHE ASN VAL ASN ASP TYR ASP ASN THR LEU SEQRES 3 A 196 THR VAL TYR THR THR ARG PRO ASP THR PHE MET GLY CYS SEQRES 4 A 196 THR TYR LEU ALA VAL ALA ALA GLY HIS PRO LEU ALA GLN SEQRES 5 A 196 LYS ALA ALA GLU ASN ASN PRO GLU LEU ALA ALA PHE ILE SEQRES 6 A 196 ASP GLU CYS ARG ASN THR LYS VAL ALA GLU ALA GLU MET SEQRES 7 A 196 ALA THR MET GLU LYS LYS GLY VAL ASP THR GLY PHE LYS SEQRES 8 A 196 ALA VAL HIS PRO LEU THR GLY GLU GLU ILE PRO VAL TRP SEQRES 9 A 196 ALA ALA ASN PHE VAL LEU MET GLU TYR GLY THR GLY ALA SEQRES 10 A 196 VAL MET ALA VAL PRO GLY HIS ASP GLN ARG ASP TYR GLU SEQRES 11 A 196 PHE ALA SER LYS TYR GLY LEU ASN ILE LYS PRO VAL ILE SEQRES 12 A 196 LEU ALA ALA ASP GLY SER GLU PRO ASP LEU SER GLN GLN SEQRES 13 A 196 ALA LEU THR GLU LYS GLY VAL LEU PHE ASN SER GLY GLU SEQRES 14 A 196 PHE ASN GLY LEU ASP HIS GLU ALA ALA PHE ASN ALA ILE SEQRES 15 A 196 ALA ASP LYS LEU THR ALA MET GLY VAL GLY GLU ARG LYS SEQRES 16 A 196 VAL SEQRES 1 B 196 MET HIS HIS HIS HIS HIS HIS ALA MET GLY GLU GLY VAL SEQRES 2 B 196 GLU ILE THR PHE ASN VAL ASN ASP TYR ASP ASN THR LEU SEQRES 3 B 196 THR VAL TYR THR THR ARG PRO ASP THR PHE MET GLY CYS SEQRES 4 B 196 THR TYR LEU ALA VAL ALA ALA GLY HIS PRO LEU ALA GLN SEQRES 5 B 196 LYS ALA ALA GLU ASN ASN PRO GLU LEU ALA ALA PHE ILE SEQRES 6 B 196 ASP GLU CYS ARG ASN THR LYS VAL ALA GLU ALA GLU MET SEQRES 7 B 196 ALA THR MET GLU LYS LYS GLY VAL ASP THR GLY PHE LYS SEQRES 8 B 196 ALA VAL HIS PRO LEU THR GLY GLU GLU ILE PRO VAL TRP SEQRES 9 B 196 ALA ALA ASN PHE VAL LEU MET GLU TYR GLY THR GLY ALA SEQRES 10 B 196 VAL MET ALA VAL PRO GLY HIS ASP GLN ARG ASP TYR GLU SEQRES 11 B 196 PHE ALA SER LYS TYR GLY LEU ASN ILE LYS PRO VAL ILE SEQRES 12 B 196 LEU ALA ALA ASP GLY SER GLU PRO ASP LEU SER GLN GLN SEQRES 13 B 196 ALA LEU THR GLU LYS GLY VAL LEU PHE ASN SER GLY GLU SEQRES 14 B 196 PHE ASN GLY LEU ASP HIS GLU ALA ALA PHE ASN ALA ILE SEQRES 15 B 196 ALA ASP LYS LEU THR ALA MET GLY VAL GLY GLU ARG LYS SEQRES 16 B 196 VAL HET ILE A 501 9 HET ILE B 601 9 HETNAM ILE ISOLEUCINE FORMUL 3 ILE 2(C6 H13 N O2) HELIX 1 1 ARG A 249 CYS A 256 5 8 HELIX 2 2 HIS A 265 GLU A 273 1 9 HELIX 3 3 ASN A 275 THR A 288 1 14 HELIX 4 4 ALA A 291 MET A 295 5 5 HELIX 5 5 ASP A 342 TYR A 352 1 11 HELIX 6 6 SER A 384 ASN A 388 5 5 HELIX 7 7 ASP A 391 MET A 406 1 16 HELIX 8 8 ARG B 249 CYS B 256 5 8 HELIX 9 9 HIS B 265 GLU B 273 1 9 HELIX 10 10 ASN B 275 CYS B 285 1 11 HELIX 11 11 ASP B 342 GLY B 353 1 12 HELIX 12 12 SER B 384 ASN B 388 5 5 HELIX 13 13 ASP B 391 MET B 406 1 16 SHEET 1 A 6 THR A 242 THR A 247 0 SHEET 2 A 6 GLY A 229 VAL A 236 -1 N ILE A 232 O VAL A 245 SHEET 3 A 6 GLY A 302 VAL A 310 -1 O VAL A 310 N ASN A 235 SHEET 4 A 6 GLU A 317 ALA A 323 -1 O ILE A 318 N ALA A 309 SHEET 5 A 6 TYR A 258 ALA A 262 1 N LEU A 259 O TRP A 321 SHEET 6 A 6 ALA A 334 ALA A 337 -1 O VAL A 335 N ALA A 260 SHEET 1 B 3 THR A 242 THR A 247 0 SHEET 2 B 3 GLY A 229 VAL A 236 -1 N ILE A 232 O VAL A 245 SHEET 3 B 3 GLY A 409 LYS A 412 -1 O GLU A 410 N GLU A 231 SHEET 1 C 3 LEU B 243 THR B 247 0 SHEET 2 C 3 GLY B 229 PHE B 234 -1 N PHE B 234 O LEU B 243 SHEET 3 C 3 GLY B 409 LYS B 412 -1 O GLU B 410 N GLU B 231 SHEET 1 D 4 GLY B 302 VAL B 310 0 SHEET 2 D 4 GLU B 317 ALA B 323 -1 O ILE B 318 N ALA B 309 SHEET 3 D 4 TYR B 258 ALA B 262 1 N VAL B 261 O ALA B 323 SHEET 4 D 4 ALA B 334 ALA B 337 -1 O VAL B 335 N ALA B 260 SHEET 1 E 2 ILE B 360 LEU B 361 0 SHEET 2 E 2 VAL B 380 LEU B 381 -1 O VAL B 380 N LEU B 361 SITE 1 AC1 6 THR A 247 THR A 252 MET A 336 HIS A 341 SITE 2 AC1 6 ASP A 342 ASP A 345 SITE 1 AC2 7 ASP A 364 THR B 247 THR B 248 ARG B 249 SITE 2 AC2 7 THR B 252 MET B 336 ASP B 345 CRYST1 112.487 112.487 135.023 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008890 0.005133 0.000000 0.00000 SCALE2 0.000000 0.010265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007406 0.00000