data_2AKE # _entry.id 2AKE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AKE pdb_00002ake 10.2210/pdb2ake/pdb NDB PR0171 ? ? RCSB RCSB033997 ? ? WWPDB D_1000033997 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1O5T _pdbx_database_related.details 'The same protein in ligand-free form' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AKE _pdbx_database_status.recvd_initial_deposition_date 2005-08-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, N.' 1 'Guo, L.' 2 'Yang, B.' 3 'Jin, Y.' 4 'Ding, J.' 5 # _citation.id primary _citation.title ;Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp) reveals the molecular basis of tRNA recognition and specificity ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 34 _citation.page_first 3246 _citation.page_last 3258 _citation.year 2006 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16798914 _citation.pdbx_database_id_DOI 10.1093/nar/gkl441 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, N.' 1 ? primary 'Guo, L.' 2 ? primary 'Yang, B.' 3 ? primary 'Jin, Y.' 4 ? primary 'Ding, J.' 5 ? # _cell.entry_id 2AKE _cell.length_a 133.200 _cell.length_b 133.200 _cell.length_c 138.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2AKE _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transfer RNA-Trp' 23240.787 1 ? ? ? ? 2 polymer man 'Tryptophanyl-tRNA synthetase' 44215.348 1 6.1.1.2 ? 'Aminoacylation Catalytic Fragment' ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn TRYPTOPHAN 204.225 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'tRNA(Trp)' 2 'Tryptophan--tRNA ligase, TrpRS, IFP53, hWRS' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCA GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCA B ? 2 'polypeptide(L)' no no ;SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQHHHHHH ; ;SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQHHHHHH ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 C n 1 5 U n 1 6 C n 1 7 G n 1 8 U n 1 9 G n 1 10 G n 1 11 C n 1 12 G n 1 13 C n 1 14 A n 1 15 A n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 G n 1 22 C n 1 23 G n 1 24 C n 1 25 G n 1 26 U n 1 27 C n 1 28 U n 1 29 G n 1 30 A n 1 31 C n 1 32 U n 1 33 C n 1 34 C n 1 35 A n 1 36 G n 1 37 A n 1 38 U n 1 39 C n 1 40 A n 1 41 G n 1 42 A n 1 43 A n 1 44 G n 1 45 G n 1 46 U n 1 47 U n 1 48 G n 1 49 C n 1 50 G n 1 51 U n 1 52 G n 1 53 U n 1 54 U n 1 55 C n 1 56 G n 1 57 A n 1 58 A n 1 59 U n 1 60 C n 1 61 A n 1 62 C n 1 63 G n 1 64 U n 1 65 C n 1 66 G n 1 67 G n 1 68 G n 1 69 G n 1 70 U n 1 71 C n 1 72 A n 2 1 SER n 2 2 ALA n 2 3 LYS n 2 4 GLY n 2 5 ILE n 2 6 ASP n 2 7 TYR n 2 8 ASP n 2 9 LYS n 2 10 LEU n 2 11 ILE n 2 12 VAL n 2 13 ARG n 2 14 PHE n 2 15 GLY n 2 16 SER n 2 17 SER n 2 18 LYS n 2 19 ILE n 2 20 ASP n 2 21 LYS n 2 22 GLU n 2 23 LEU n 2 24 ILE n 2 25 ASN n 2 26 ARG n 2 27 ILE n 2 28 GLU n 2 29 ARG n 2 30 ALA n 2 31 THR n 2 32 GLY n 2 33 GLN n 2 34 ARG n 2 35 PRO n 2 36 HIS n 2 37 HIS n 2 38 PHE n 2 39 LEU n 2 40 ARG n 2 41 ARG n 2 42 GLY n 2 43 ILE n 2 44 PHE n 2 45 PHE n 2 46 SER n 2 47 HIS n 2 48 ARG n 2 49 ASP n 2 50 MET n 2 51 ASN n 2 52 GLN n 2 53 VAL n 2 54 LEU n 2 55 ASP n 2 56 ALA n 2 57 TYR n 2 58 GLU n 2 59 ASN n 2 60 LYS n 2 61 LYS n 2 62 PRO n 2 63 PHE n 2 64 TYR n 2 65 LEU n 2 66 TYR n 2 67 THR n 2 68 GLY n 2 69 ARG n 2 70 GLY n 2 71 PRO n 2 72 SER n 2 73 SER n 2 74 GLU n 2 75 ALA n 2 76 MET n 2 77 HIS n 2 78 VAL n 2 79 GLY n 2 80 HIS n 2 81 LEU n 2 82 ILE n 2 83 PRO n 2 84 PHE n 2 85 ILE n 2 86 PHE n 2 87 THR n 2 88 LYS n 2 89 TRP n 2 90 LEU n 2 91 GLN n 2 92 ASP n 2 93 VAL n 2 94 PHE n 2 95 ASN n 2 96 VAL n 2 97 PRO n 2 98 LEU n 2 99 VAL n 2 100 ILE n 2 101 GLN n 2 102 MET n 2 103 THR n 2 104 ASP n 2 105 ASP n 2 106 GLU n 2 107 LYS n 2 108 TYR n 2 109 LEU n 2 110 TRP n 2 111 LYS n 2 112 ASP n 2 113 LEU n 2 114 THR n 2 115 LEU n 2 116 ASP n 2 117 GLN n 2 118 ALA n 2 119 TYR n 2 120 SER n 2 121 TYR n 2 122 ALA n 2 123 VAL n 2 124 GLU n 2 125 ASN n 2 126 ALA n 2 127 LYS n 2 128 ASP n 2 129 ILE n 2 130 ILE n 2 131 ALA n 2 132 CYS n 2 133 GLY n 2 134 PHE n 2 135 ASP n 2 136 ILE n 2 137 ASN n 2 138 LYS n 2 139 THR n 2 140 PHE n 2 141 ILE n 2 142 PHE n 2 143 SER n 2 144 ASP n 2 145 LEU n 2 146 ASP n 2 147 TYR n 2 148 MET n 2 149 GLY n 2 150 MET n 2 151 SER n 2 152 SER n 2 153 GLY n 2 154 PHE n 2 155 TYR n 2 156 LYS n 2 157 ASN n 2 158 VAL n 2 159 VAL n 2 160 LYS n 2 161 ILE n 2 162 GLN n 2 163 LYS n 2 164 HIS n 2 165 VAL n 2 166 THR n 2 167 PHE n 2 168 ASN n 2 169 GLN n 2 170 VAL n 2 171 LYS n 2 172 GLY n 2 173 ILE n 2 174 PHE n 2 175 GLY n 2 176 PHE n 2 177 THR n 2 178 ASP n 2 179 SER n 2 180 ASP n 2 181 CYS n 2 182 ILE n 2 183 GLY n 2 184 LYS n 2 185 ILE n 2 186 SER n 2 187 PHE n 2 188 PRO n 2 189 ALA n 2 190 ILE n 2 191 GLN n 2 192 ALA n 2 193 ALA n 2 194 PRO n 2 195 SER n 2 196 PHE n 2 197 SER n 2 198 ASN n 2 199 SER n 2 200 PHE n 2 201 PRO n 2 202 GLN n 2 203 ILE n 2 204 PHE n 2 205 ARG n 2 206 ASP n 2 207 ARG n 2 208 THR n 2 209 ASP n 2 210 ILE n 2 211 GLN n 2 212 CYS n 2 213 LEU n 2 214 ILE n 2 215 PRO n 2 216 CYS n 2 217 ALA n 2 218 ILE n 2 219 ASP n 2 220 GLN n 2 221 ASP n 2 222 PRO n 2 223 TYR n 2 224 PHE n 2 225 ARG n 2 226 MET n 2 227 THR n 2 228 ARG n 2 229 ASP n 2 230 VAL n 2 231 ALA n 2 232 PRO n 2 233 ARG n 2 234 ILE n 2 235 GLY n 2 236 TYR n 2 237 PRO n 2 238 LYS n 2 239 PRO n 2 240 ALA n 2 241 LEU n 2 242 LEU n 2 243 HIS n 2 244 SER n 2 245 THR n 2 246 PHE n 2 247 PHE n 2 248 PRO n 2 249 ALA n 2 250 LEU n 2 251 GLN n 2 252 GLY n 2 253 ALA n 2 254 GLN n 2 255 THR n 2 256 LYS n 2 257 MET n 2 258 SER n 2 259 ALA n 2 260 SER n 2 261 ASP n 2 262 PRO n 2 263 ASN n 2 264 SER n 2 265 SER n 2 266 ILE n 2 267 PHE n 2 268 LEU n 2 269 THR n 2 270 ASP n 2 271 THR n 2 272 ALA n 2 273 LYS n 2 274 GLN n 2 275 ILE n 2 276 LYS n 2 277 THR n 2 278 LYS n 2 279 VAL n 2 280 ASN n 2 281 LYS n 2 282 HIS n 2 283 ALA n 2 284 PHE n 2 285 SER n 2 286 GLY n 2 287 GLY n 2 288 ARG n 2 289 ASP n 2 290 THR n 2 291 ILE n 2 292 GLU n 2 293 GLU n 2 294 HIS n 2 295 ARG n 2 296 GLN n 2 297 PHE n 2 298 GLY n 2 299 GLY n 2 300 ASN n 2 301 CYS n 2 302 ASP n 2 303 VAL n 2 304 ASP n 2 305 VAL n 2 306 SER n 2 307 PHE n 2 308 MET n 2 309 TYR n 2 310 LEU n 2 311 THR n 2 312 PHE n 2 313 PHE n 2 314 LEU n 2 315 GLU n 2 316 ASP n 2 317 ASP n 2 318 ASP n 2 319 LYS n 2 320 LEU n 2 321 GLU n 2 322 GLN n 2 323 ILE n 2 324 ARG n 2 325 LYS n 2 326 ASP n 2 327 TYR n 2 328 THR n 2 329 SER n 2 330 GLY n 2 331 ALA n 2 332 MET n 2 333 LEU n 2 334 THR n 2 335 GLY n 2 336 GLU n 2 337 LEU n 2 338 LYS n 2 339 LYS n 2 340 ALA n 2 341 LEU n 2 342 ILE n 2 343 GLU n 2 344 VAL n 2 345 LEU n 2 346 GLN n 2 347 PRO n 2 348 LEU n 2 349 ILE n 2 350 ALA n 2 351 GLU n 2 352 HIS n 2 353 GLN n 2 354 ALA n 2 355 ARG n 2 356 ARG n 2 357 LYS n 2 358 GLU n 2 359 VAL n 2 360 THR n 2 361 ASP n 2 362 GLU n 2 363 ILE n 2 364 VAL n 2 365 LYS n 2 366 GLU n 2 367 PHE n 2 368 MET n 2 369 THR n 2 370 PRO n 2 371 ARG n 2 372 LYS n 2 373 LEU n 2 374 SER n 2 375 PHE n 2 376 ASP n 2 377 PHE n 2 378 GLN n 2 379 HIS n 2 380 HIS n 2 381 HIS n 2 382 HIS n 2 383 HIS n 2 384 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? cattle Bos ? ? ? ? ? ? ? 'Bos taurus' 9913 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? JM109 ? ? ? ? ? ? ? PLASMID ? ? ? 'pGEM-9zf(-)' ? ? 2 1 sample ? ? ? human Homo 'WARS, WRS' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3)-codonplus' ? ? ? ? ? ? ? PLASMID ? ? ? 'pET24a(+)' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SYW_HUMAN P23381 2 ;SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGH LIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVK IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKL EQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQ ; 94 ? 2 GB M10543 173974 1 GACCUCGUGGCGCAAUGGUAGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCGAAUCACGUCGGGGUCA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AKE A 1 ? 378 ? P23381 94 ? 471 ? 94 471 2 2 2AKE B 1 ? 72 ? 173974 1 ? 72 ? 1 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2AKE HIS A 379 ? UNP P23381 ? ? 'expression tag' 472 1 1 2AKE HIS A 380 ? UNP P23381 ? ? 'expression tag' 473 2 1 2AKE HIS A 381 ? UNP P23381 ? ? 'expression tag' 474 3 1 2AKE HIS A 382 ? UNP P23381 ? ? 'expression tag' 475 4 1 2AKE HIS A 383 ? UNP P23381 ? ? 'expression tag' 476 5 1 2AKE HIS A 384 ? UNP P23381 ? ? 'expression tag' 477 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2AKE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.8 _exptl_crystal.density_percent_sol 74.1 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulfate' ? ? ? 1 2 2 'ammonium sulfate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BSRF BEAMLINE 3W1A' _diffrn_source.pdbx_synchrotron_site BSRF _diffrn_source.pdbx_synchrotron_beamline 3W1A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2AKE _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 3.1 _reflns.number_obs 23201 _reflns.number_all 23201 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.7 _reflns.B_iso_Wilson_estimate 61.5 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.29 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.568 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2246 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2AKE _refine.ls_number_reflns_obs 23169 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2389300.86 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.97 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23 _refine.ls_R_factor_R_free 0.27 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1167 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 70.5 _refine.aniso_B[1][1] 3.50 _refine.aniso_B[2][2] 8.13 _refine.aniso_B[3][3] -11.63 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.339774 _refine.solvent_model_param_bsol 41.6009 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1O5T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2AKE _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.45 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.54 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3015 _refine_hist.pdbx_number_atoms_nucleic_acid 1541 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4576 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 47.97 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.15 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.09 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.61 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 9.42 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 13.05 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.10 _refine_ls_shell.d_res_low 3.29 _refine_ls_shell.number_reflns_R_work 3570 _refine_ls_shell.R_factor_R_work 0.305 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.365 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 195 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna_rep.param 'X-RAY DIFFRACTION' 3 trp.par tym.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2AKE _struct.title 'Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AKE _struct_keywords.pdbx_keywords LIGASE/RNA _struct_keywords.text 'Rossmann fold, LIGASE-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'This enzyme is a homodimer, which is generated by the crystallographic two-fold axis.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP B 6 ? GLY B 15 ? ASP A 99 GLY A 108 1 ? 10 HELX_P HELX_P2 2 ASP B 20 ? GLY B 32 ? ASP A 113 GLY A 125 1 ? 13 HELX_P HELX_P3 3 HIS B 36 ? ARG B 41 ? HIS A 129 ARG A 134 1 ? 6 HELX_P HELX_P4 4 ASP B 49 ? ASN B 59 ? ASP A 142 ASN A 152 1 ? 11 HELX_P HELX_P5 5 HIS B 77 ? ASN B 95 ? HIS A 170 ASN A 188 1 ? 19 HELX_P HELX_P6 6 THR B 103 ? LYS B 111 ? THR A 196 LYS A 204 1 ? 9 HELX_P HELX_P7 7 THR B 114 ? ALA B 131 ? THR A 207 ALA A 224 1 ? 18 HELX_P HELX_P8 8 ASP B 144 ? GLY B 149 ? ASP A 237 GLY A 242 1 ? 6 HELX_P HELX_P9 9 SER B 152 ? HIS B 164 ? SER A 245 HIS A 257 1 ? 13 HELX_P HELX_P10 10 THR B 166 ? GLY B 175 ? THR A 259 GLY A 268 1 ? 10 HELX_P HELX_P11 11 CYS B 181 ? SER B 186 ? CYS A 274 SER A 279 1 ? 6 HELX_P HELX_P12 12 SER B 186 ? ALA B 193 ? SER A 279 ALA A 286 1 ? 8 HELX_P HELX_P13 13 PRO B 194 ? SER B 199 ? PRO A 287 SER A 292 5 ? 6 HELX_P HELX_P14 14 PHE B 200 ? ARG B 205 ? PHE A 293 ARG A 298 1 ? 6 HELX_P HELX_P15 15 GLN B 220 ? ILE B 234 ? GLN A 313 ILE A 327 1 ? 15 HELX_P HELX_P16 16 ASP B 261 ? SER B 265 ? ASP A 354 SER A 358 5 ? 5 HELX_P HELX_P17 17 THR B 271 ? ALA B 283 ? THR A 364 ALA A 376 1 ? 13 HELX_P HELX_P18 18 THR B 290 ? GLY B 298 ? THR A 383 GLY A 391 1 ? 9 HELX_P HELX_P19 19 ASP B 304 ? LEU B 314 ? ASP A 397 LEU A 407 1 ? 11 HELX_P HELX_P20 20 ASP B 316 ? GLY B 330 ? ASP A 409 GLY A 423 1 ? 15 HELX_P HELX_P21 21 LEU B 333 ? GLU B 358 ? LEU A 426 GLU A 451 1 ? 26 HELX_P HELX_P22 22 THR B 360 ? MET B 368 ? THR A 453 MET A 461 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N1 ? ? B C 3 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 69 O6 ? ? B C 3 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 69 N2 ? ? B C 3 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 68 N1 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 68 O6 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 68 N2 ? ? B C 4 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 67 O6 ? ? B U 5 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 67 N1 ? ? B U 5 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 66 N1 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 66 O6 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 66 N2 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 65 N3 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 65 O2 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 65 N4 ? ? B G 7 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 44 O6 ? ? B G 9 B G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 O2 ? ? B G 10 B C 25 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog18 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 23 O6 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog19 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 22 N3 ? ? B G 12 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 22 O2 ? ? B G 12 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 22 N4 ? ? B G 12 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N1 ? ? B C 13 B G 22 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog23 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 20 N3 ? ? B A 14 B A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A U 16 O4 ? ? ? 1_555 A G 56 N2 ? ? B U 16 B G 57 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 25 N1 ? ? ? 1_555 A A 43 N1 ? ? B G 26 B A 44 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 26 O4 ? ? ? 1_555 A A 42 N6 ? ? B U 27 B A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog27 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 41 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog28 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 40 N1 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 40 N6 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 39 N3 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 39 O2 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 39 N4 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 38 N3 ? ? B A 31 B U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 38 O4 ? ? B A 31 B U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 31 O2 ? ? ? 1_555 A A 37 N6 ? ? B C 32 B A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 48 N1 ? ? ? 1_555 A U 64 O2 ? ? B G 49 B U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 48 O6 ? ? ? 1_555 A U 64 N3 ? ? B G 49 B U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 63 N1 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 63 O6 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 63 N2 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 62 N3 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 62 O2 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 62 N4 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 61 N1 ? ? B U 52 B A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 61 N6 ? ? B U 52 B A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 60 N3 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 60 O2 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 60 N4 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 53 O2 ? ? ? 1_555 A A 57 N6 ? ? B U 54 B A 58 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 17 ? LYS B 18 ? SER A 110 LYS A 111 A 2 PHE B 44 ? ARG B 48 ? PHE A 137 ARG A 141 A 3 ALA B 240 ? SER B 244 ? ALA A 333 SER A 337 A 4 GLN B 211 ? ALA B 217 ? GLN A 304 ALA A 310 A 5 PHE B 63 ? ARG B 69 ? PHE A 156 ARG A 162 A 6 LEU B 98 ? MET B 102 ? LEU A 191 MET A 195 A 7 THR B 139 ? SER B 143 ? THR A 232 SER A 236 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 17 ? N SER A 110 O HIS B 47 ? O HIS A 140 A 2 3 N ARG B 48 ? N ARG A 141 O LEU B 241 ? O LEU A 334 A 3 4 O ALA B 240 ? O ALA A 333 N ILE B 214 ? N ILE A 307 A 4 5 O GLN B 211 ? O GLN A 304 N TYR B 64 ? N TYR A 157 A 5 6 N ARG B 69 ? N ARG A 162 O GLN B 101 ? O GLN A 194 A 6 7 N ILE B 100 ? N ILE A 193 O PHE B 142 ? O PHE A 235 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 478 ? 4 'BINDING SITE FOR RESIDUE SO4 A 478' AC2 Software A TRP 479 ? 13 'BINDING SITE FOR RESIDUE TRP A 479' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG B 69 ? ARG A 162 . ? 1_555 ? 2 AC1 4 SER B 72 ? SER A 165 . ? 1_555 ? 3 AC1 4 HIS B 80 ? HIS A 173 . ? 1_555 ? 4 AC1 4 ALA B 259 ? ALA A 352 . ? 1_555 ? 5 AC2 13 TYR B 66 ? TYR A 159 . ? 1_555 ? 6 AC2 13 THR B 67 ? THR A 160 . ? 1_555 ? 7 AC2 13 GLY B 68 ? GLY A 161 . ? 1_555 ? 8 AC2 13 ARG B 69 ? ARG A 162 . ? 1_555 ? 9 AC2 13 GLY B 70 ? GLY A 163 . ? 1_555 ? 10 AC2 13 GLN B 101 ? GLN A 194 . ? 1_555 ? 11 AC2 13 THR B 103 ? THR A 196 . ? 1_555 ? 12 AC2 13 GLU B 106 ? GLU A 199 . ? 1_555 ? 13 AC2 13 GLN B 191 ? GLN A 284 . ? 1_555 ? 14 AC2 13 ILE B 214 ? ILE A 307 . ? 1_555 ? 15 AC2 13 CYS B 216 ? CYS A 309 . ? 1_555 ? 16 AC2 13 GLN B 220 ? GLN A 313 . ? 1_555 ? 17 AC2 13 PHE B 224 ? PHE A 317 . ? 1_555 ? # _database_PDB_matrix.entry_id 2AKE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AKE _atom_sites.fract_transf_matrix[1][1] 0.007508 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007508 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007231 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 A 2 2 2 A A B . n A 1 3 C 3 3 3 C C B . n A 1 4 C 4 4 4 C C B . n A 1 5 U 5 5 5 U U B . n A 1 6 C 6 6 6 C C B . n A 1 7 G 7 7 7 G G B . n A 1 8 U 8 8 8 U U B . n A 1 9 G 9 9 9 G G B . n A 1 10 G 10 10 10 G G B . n A 1 11 C 11 11 11 C C B . n A 1 12 G 12 12 12 G G B . n A 1 13 C 13 13 13 C C B . n A 1 14 A 14 14 14 A A B . n A 1 15 A 15 15 15 A A B . n A 1 16 U 16 16 16 U U B . n A 1 17 G 17 18 18 G G B . n A 1 18 G 18 19 19 G G B . n A 1 19 U 19 20 20 U U B . n A 1 20 A 20 21 21 A A B . n A 1 21 G 21 22 22 G G B . n A 1 22 C 22 23 23 C C B . n A 1 23 G 23 24 24 G G B . n A 1 24 C 24 25 25 C C B . n A 1 25 G 25 26 26 G G B . n A 1 26 U 26 27 27 U U B . n A 1 27 C 27 28 28 C C B . n A 1 28 U 28 29 29 U U B . n A 1 29 G 29 30 30 G G B . n A 1 30 A 30 31 31 A A B . n A 1 31 C 31 32 32 C C B . n A 1 32 U 32 33 33 U U B . n A 1 33 C 33 34 34 C C B . n A 1 34 C 34 35 35 C C B . n A 1 35 A 35 36 36 A A B . n A 1 36 G 36 37 37 G G B . n A 1 37 A 37 38 38 A A B . n A 1 38 U 38 39 39 U U B . n A 1 39 C 39 40 40 C C B . n A 1 40 A 40 41 41 A A B . n A 1 41 G 41 42 42 G G B . n A 1 42 A 42 43 43 A A B . n A 1 43 A 43 44 44 A A B . n A 1 44 G 44 45 45 G G B . n A 1 45 G 45 46 46 G G B . n A 1 46 U 46 47 47 U U B . n A 1 47 U 47 48 48 U U B . n A 1 48 G 48 49 49 G G B . n A 1 49 C 49 50 50 C C B . n A 1 50 G 50 51 51 G G B . n A 1 51 U 51 52 52 U U B . n A 1 52 G 52 53 53 G G B . n A 1 53 U 53 54 54 U U B . n A 1 54 U 54 55 55 U U B . n A 1 55 C 55 56 56 C C B . n A 1 56 G 56 57 57 G G B . n A 1 57 A 57 58 58 A A B . n A 1 58 A 58 59 59 A A B . n A 1 59 U 59 60 60 U U B . n A 1 60 C 60 61 61 C C B . n A 1 61 A 61 62 62 A A B . n A 1 62 C 62 63 63 C C B . n A 1 63 G 63 64 64 G G B . n A 1 64 U 64 65 65 U U B . n A 1 65 C 65 66 66 C C B . n A 1 66 G 66 67 67 G G B . n A 1 67 G 67 68 68 G G B . n A 1 68 G 68 69 69 G G B . n A 1 69 G 69 70 70 G G B . n A 1 70 U 70 71 71 U U B . n A 1 71 C 71 72 72 C C B . n A 1 72 A 72 73 73 A A B . n B 2 1 SER 1 94 ? ? ? A . n B 2 2 ALA 2 95 ? ? ? A . n B 2 3 LYS 3 96 ? ? ? A . n B 2 4 GLY 4 97 97 GLY GLY A . n B 2 5 ILE 5 98 98 ILE ILE A . n B 2 6 ASP 6 99 99 ASP ASP A . n B 2 7 TYR 7 100 100 TYR TYR A . n B 2 8 ASP 8 101 101 ASP ASP A . n B 2 9 LYS 9 102 102 LYS LYS A . n B 2 10 LEU 10 103 103 LEU LEU A . n B 2 11 ILE 11 104 104 ILE ILE A . n B 2 12 VAL 12 105 105 VAL VAL A . n B 2 13 ARG 13 106 106 ARG ARG A . n B 2 14 PHE 14 107 107 PHE PHE A . n B 2 15 GLY 15 108 108 GLY GLY A . n B 2 16 SER 16 109 109 SER SER A . n B 2 17 SER 17 110 110 SER SER A . n B 2 18 LYS 18 111 111 LYS LYS A . n B 2 19 ILE 19 112 112 ILE ILE A . n B 2 20 ASP 20 113 113 ASP ASP A . n B 2 21 LYS 21 114 114 LYS LYS A . n B 2 22 GLU 22 115 115 GLU GLU A . n B 2 23 LEU 23 116 116 LEU LEU A . n B 2 24 ILE 24 117 117 ILE ILE A . n B 2 25 ASN 25 118 118 ASN ASN A . n B 2 26 ARG 26 119 119 ARG ARG A . n B 2 27 ILE 27 120 120 ILE ILE A . n B 2 28 GLU 28 121 121 GLU GLU A . n B 2 29 ARG 29 122 122 ARG ARG A . n B 2 30 ALA 30 123 123 ALA ALA A . n B 2 31 THR 31 124 124 THR THR A . n B 2 32 GLY 32 125 125 GLY GLY A . n B 2 33 GLN 33 126 126 GLN GLN A . n B 2 34 ARG 34 127 127 ARG ARG A . n B 2 35 PRO 35 128 128 PRO PRO A . n B 2 36 HIS 36 129 129 HIS HIS A . n B 2 37 HIS 37 130 130 HIS HIS A . n B 2 38 PHE 38 131 131 PHE PHE A . n B 2 39 LEU 39 132 132 LEU LEU A . n B 2 40 ARG 40 133 133 ARG ARG A . n B 2 41 ARG 41 134 134 ARG ARG A . n B 2 42 GLY 42 135 135 GLY GLY A . n B 2 43 ILE 43 136 136 ILE ILE A . n B 2 44 PHE 44 137 137 PHE PHE A . n B 2 45 PHE 45 138 138 PHE PHE A . n B 2 46 SER 46 139 139 SER SER A . n B 2 47 HIS 47 140 140 HIS HIS A . n B 2 48 ARG 48 141 141 ARG ARG A . n B 2 49 ASP 49 142 142 ASP ASP A . n B 2 50 MET 50 143 143 MET MET A . n B 2 51 ASN 51 144 144 ASN ASN A . n B 2 52 GLN 52 145 145 GLN GLN A . n B 2 53 VAL 53 146 146 VAL VAL A . n B 2 54 LEU 54 147 147 LEU LEU A . n B 2 55 ASP 55 148 148 ASP ASP A . n B 2 56 ALA 56 149 149 ALA ALA A . n B 2 57 TYR 57 150 150 TYR TYR A . n B 2 58 GLU 58 151 151 GLU GLU A . n B 2 59 ASN 59 152 152 ASN ASN A . n B 2 60 LYS 60 153 153 LYS LYS A . n B 2 61 LYS 61 154 154 LYS LYS A . n B 2 62 PRO 62 155 155 PRO PRO A . n B 2 63 PHE 63 156 156 PHE PHE A . n B 2 64 TYR 64 157 157 TYR TYR A . n B 2 65 LEU 65 158 158 LEU LEU A . n B 2 66 TYR 66 159 159 TYR TYR A . n B 2 67 THR 67 160 160 THR THR A . n B 2 68 GLY 68 161 161 GLY GLY A . n B 2 69 ARG 69 162 162 ARG ARG A . n B 2 70 GLY 70 163 163 GLY GLY A . n B 2 71 PRO 71 164 164 PRO PRO A . n B 2 72 SER 72 165 165 SER SER A . n B 2 73 SER 73 166 166 SER SER A . n B 2 74 GLU 74 167 167 GLU GLU A . n B 2 75 ALA 75 168 168 ALA ALA A . n B 2 76 MET 76 169 169 MET MET A . n B 2 77 HIS 77 170 170 HIS HIS A . n B 2 78 VAL 78 171 171 VAL VAL A . n B 2 79 GLY 79 172 172 GLY GLY A . n B 2 80 HIS 80 173 173 HIS HIS A . n B 2 81 LEU 81 174 174 LEU LEU A . n B 2 82 ILE 82 175 175 ILE ILE A . n B 2 83 PRO 83 176 176 PRO PRO A . n B 2 84 PHE 84 177 177 PHE PHE A . n B 2 85 ILE 85 178 178 ILE ILE A . n B 2 86 PHE 86 179 179 PHE PHE A . n B 2 87 THR 87 180 180 THR THR A . n B 2 88 LYS 88 181 181 LYS LYS A . n B 2 89 TRP 89 182 182 TRP TRP A . n B 2 90 LEU 90 183 183 LEU LEU A . n B 2 91 GLN 91 184 184 GLN GLN A . n B 2 92 ASP 92 185 185 ASP ASP A . n B 2 93 VAL 93 186 186 VAL VAL A . n B 2 94 PHE 94 187 187 PHE PHE A . n B 2 95 ASN 95 188 188 ASN ASN A . n B 2 96 VAL 96 189 189 VAL VAL A . n B 2 97 PRO 97 190 190 PRO PRO A . n B 2 98 LEU 98 191 191 LEU LEU A . n B 2 99 VAL 99 192 192 VAL VAL A . n B 2 100 ILE 100 193 193 ILE ILE A . n B 2 101 GLN 101 194 194 GLN GLN A . n B 2 102 MET 102 195 195 MET MET A . n B 2 103 THR 103 196 196 THR THR A . n B 2 104 ASP 104 197 197 ASP ASP A . n B 2 105 ASP 105 198 198 ASP ASP A . n B 2 106 GLU 106 199 199 GLU GLU A . n B 2 107 LYS 107 200 200 LYS LYS A . n B 2 108 TYR 108 201 201 TYR TYR A . n B 2 109 LEU 109 202 202 LEU LEU A . n B 2 110 TRP 110 203 203 TRP TRP A . n B 2 111 LYS 111 204 204 LYS LYS A . n B 2 112 ASP 112 205 205 ASP ASP A . n B 2 113 LEU 113 206 206 LEU LEU A . n B 2 114 THR 114 207 207 THR THR A . n B 2 115 LEU 115 208 208 LEU LEU A . n B 2 116 ASP 116 209 209 ASP ASP A . n B 2 117 GLN 117 210 210 GLN GLN A . n B 2 118 ALA 118 211 211 ALA ALA A . n B 2 119 TYR 119 212 212 TYR TYR A . n B 2 120 SER 120 213 213 SER SER A . n B 2 121 TYR 121 214 214 TYR TYR A . n B 2 122 ALA 122 215 215 ALA ALA A . n B 2 123 VAL 123 216 216 VAL VAL A . n B 2 124 GLU 124 217 217 GLU GLU A . n B 2 125 ASN 125 218 218 ASN ASN A . n B 2 126 ALA 126 219 219 ALA ALA A . n B 2 127 LYS 127 220 220 LYS LYS A . n B 2 128 ASP 128 221 221 ASP ASP A . n B 2 129 ILE 129 222 222 ILE ILE A . n B 2 130 ILE 130 223 223 ILE ILE A . n B 2 131 ALA 131 224 224 ALA ALA A . n B 2 132 CYS 132 225 225 CYS CYS A . n B 2 133 GLY 133 226 226 GLY GLY A . n B 2 134 PHE 134 227 227 PHE PHE A . n B 2 135 ASP 135 228 228 ASP ASP A . n B 2 136 ILE 136 229 229 ILE ILE A . n B 2 137 ASN 137 230 230 ASN ASN A . n B 2 138 LYS 138 231 231 LYS LYS A . n B 2 139 THR 139 232 232 THR THR A . n B 2 140 PHE 140 233 233 PHE PHE A . n B 2 141 ILE 141 234 234 ILE ILE A . n B 2 142 PHE 142 235 235 PHE PHE A . n B 2 143 SER 143 236 236 SER SER A . n B 2 144 ASP 144 237 237 ASP ASP A . n B 2 145 LEU 145 238 238 LEU LEU A . n B 2 146 ASP 146 239 239 ASP ASP A . n B 2 147 TYR 147 240 240 TYR TYR A . n B 2 148 MET 148 241 241 MET MET A . n B 2 149 GLY 149 242 242 GLY GLY A . n B 2 150 MET 150 243 243 MET MET A . n B 2 151 SER 151 244 244 SER SER A . n B 2 152 SER 152 245 245 SER SER A . n B 2 153 GLY 153 246 246 GLY GLY A . n B 2 154 PHE 154 247 247 PHE PHE A . n B 2 155 TYR 155 248 248 TYR TYR A . n B 2 156 LYS 156 249 249 LYS LYS A . n B 2 157 ASN 157 250 250 ASN ASN A . n B 2 158 VAL 158 251 251 VAL VAL A . n B 2 159 VAL 159 252 252 VAL VAL A . n B 2 160 LYS 160 253 253 LYS LYS A . n B 2 161 ILE 161 254 254 ILE ILE A . n B 2 162 GLN 162 255 255 GLN GLN A . n B 2 163 LYS 163 256 256 LYS LYS A . n B 2 164 HIS 164 257 257 HIS HIS A . n B 2 165 VAL 165 258 258 VAL VAL A . n B 2 166 THR 166 259 259 THR THR A . n B 2 167 PHE 167 260 260 PHE PHE A . n B 2 168 ASN 168 261 261 ASN ASN A . n B 2 169 GLN 169 262 262 GLN GLN A . n B 2 170 VAL 170 263 263 VAL VAL A . n B 2 171 LYS 171 264 264 LYS LYS A . n B 2 172 GLY 172 265 265 GLY GLY A . n B 2 173 ILE 173 266 266 ILE ILE A . n B 2 174 PHE 174 267 267 PHE PHE A . n B 2 175 GLY 175 268 268 GLY GLY A . n B 2 176 PHE 176 269 269 PHE PHE A . n B 2 177 THR 177 270 270 THR THR A . n B 2 178 ASP 178 271 271 ASP ASP A . n B 2 179 SER 179 272 272 SER SER A . n B 2 180 ASP 180 273 273 ASP ASP A . n B 2 181 CYS 181 274 274 CYS CYS A . n B 2 182 ILE 182 275 275 ILE ILE A . n B 2 183 GLY 183 276 276 GLY GLY A . n B 2 184 LYS 184 277 277 LYS LYS A . n B 2 185 ILE 185 278 278 ILE ILE A . n B 2 186 SER 186 279 279 SER SER A . n B 2 187 PHE 187 280 280 PHE PHE A . n B 2 188 PRO 188 281 281 PRO PRO A . n B 2 189 ALA 189 282 282 ALA ALA A . n B 2 190 ILE 190 283 283 ILE ILE A . n B 2 191 GLN 191 284 284 GLN GLN A . n B 2 192 ALA 192 285 285 ALA ALA A . n B 2 193 ALA 193 286 286 ALA ALA A . n B 2 194 PRO 194 287 287 PRO PRO A . n B 2 195 SER 195 288 288 SER SER A . n B 2 196 PHE 196 289 289 PHE PHE A . n B 2 197 SER 197 290 290 SER SER A . n B 2 198 ASN 198 291 291 ASN ASN A . n B 2 199 SER 199 292 292 SER SER A . n B 2 200 PHE 200 293 293 PHE PHE A . n B 2 201 PRO 201 294 294 PRO PRO A . n B 2 202 GLN 202 295 295 GLN GLN A . n B 2 203 ILE 203 296 296 ILE ILE A . n B 2 204 PHE 204 297 297 PHE PHE A . n B 2 205 ARG 205 298 298 ARG ARG A . n B 2 206 ASP 206 299 299 ASP ASP A . n B 2 207 ARG 207 300 300 ARG ARG A . n B 2 208 THR 208 301 301 THR THR A . n B 2 209 ASP 209 302 302 ASP ASP A . n B 2 210 ILE 210 303 303 ILE ILE A . n B 2 211 GLN 211 304 304 GLN GLN A . n B 2 212 CYS 212 305 305 CYS CYS A . n B 2 213 LEU 213 306 306 LEU LEU A . n B 2 214 ILE 214 307 307 ILE ILE A . n B 2 215 PRO 215 308 308 PRO PRO A . n B 2 216 CYS 216 309 309 CYS CYS A . n B 2 217 ALA 217 310 310 ALA ALA A . n B 2 218 ILE 218 311 311 ILE ILE A . n B 2 219 ASP 219 312 312 ASP ASP A . n B 2 220 GLN 220 313 313 GLN GLN A . n B 2 221 ASP 221 314 314 ASP ASP A . n B 2 222 PRO 222 315 315 PRO PRO A . n B 2 223 TYR 223 316 316 TYR TYR A . n B 2 224 PHE 224 317 317 PHE PHE A . n B 2 225 ARG 225 318 318 ARG ARG A . n B 2 226 MET 226 319 319 MET MET A . n B 2 227 THR 227 320 320 THR THR A . n B 2 228 ARG 228 321 321 ARG ARG A . n B 2 229 ASP 229 322 322 ASP ASP A . n B 2 230 VAL 230 323 323 VAL VAL A . n B 2 231 ALA 231 324 324 ALA ALA A . n B 2 232 PRO 232 325 325 PRO PRO A . n B 2 233 ARG 233 326 326 ARG ARG A . n B 2 234 ILE 234 327 327 ILE ILE A . n B 2 235 GLY 235 328 328 GLY GLY A . n B 2 236 TYR 236 329 329 TYR TYR A . n B 2 237 PRO 237 330 330 PRO PRO A . n B 2 238 LYS 238 331 331 LYS LYS A . n B 2 239 PRO 239 332 332 PRO PRO A . n B 2 240 ALA 240 333 333 ALA ALA A . n B 2 241 LEU 241 334 334 LEU LEU A . n B 2 242 LEU 242 335 335 LEU LEU A . n B 2 243 HIS 243 336 336 HIS HIS A . n B 2 244 SER 244 337 337 SER SER A . n B 2 245 THR 245 338 338 THR THR A . n B 2 246 PHE 246 339 339 PHE PHE A . n B 2 247 PHE 247 340 340 PHE PHE A . n B 2 248 PRO 248 341 341 PRO PRO A . n B 2 249 ALA 249 342 342 ALA ALA A . n B 2 250 LEU 250 343 343 LEU LEU A . n B 2 251 GLN 251 344 344 GLN GLN A . n B 2 252 GLY 252 345 345 GLY GLY A . n B 2 253 ALA 253 346 346 ALA ALA A . n B 2 254 GLN 254 347 347 GLN GLN A . n B 2 255 THR 255 348 348 THR THR A . n B 2 256 LYS 256 349 349 LYS LYS A . n B 2 257 MET 257 350 350 MET MET A . n B 2 258 SER 258 351 351 SER SER A . n B 2 259 ALA 259 352 352 ALA ALA A . n B 2 260 SER 260 353 353 SER SER A . n B 2 261 ASP 261 354 354 ASP ASP A . n B 2 262 PRO 262 355 355 PRO PRO A . n B 2 263 ASN 263 356 356 ASN ASN A . n B 2 264 SER 264 357 357 SER SER A . n B 2 265 SER 265 358 358 SER SER A . n B 2 266 ILE 266 359 359 ILE ILE A . n B 2 267 PHE 267 360 360 PHE PHE A . n B 2 268 LEU 268 361 361 LEU LEU A . n B 2 269 THR 269 362 362 THR THR A . n B 2 270 ASP 270 363 363 ASP ASP A . n B 2 271 THR 271 364 364 THR THR A . n B 2 272 ALA 272 365 365 ALA ALA A . n B 2 273 LYS 273 366 366 LYS LYS A . n B 2 274 GLN 274 367 367 GLN GLN A . n B 2 275 ILE 275 368 368 ILE ILE A . n B 2 276 LYS 276 369 369 LYS LYS A . n B 2 277 THR 277 370 370 THR THR A . n B 2 278 LYS 278 371 371 LYS LYS A . n B 2 279 VAL 279 372 372 VAL VAL A . n B 2 280 ASN 280 373 373 ASN ASN A . n B 2 281 LYS 281 374 374 LYS LYS A . n B 2 282 HIS 282 375 375 HIS HIS A . n B 2 283 ALA 283 376 376 ALA ALA A . n B 2 284 PHE 284 377 377 PHE PHE A . n B 2 285 SER 285 378 378 SER SER A . n B 2 286 GLY 286 379 379 GLY GLY A . n B 2 287 GLY 287 380 380 GLY GLY A . n B 2 288 ARG 288 381 381 ARG ARG A . n B 2 289 ASP 289 382 382 ASP ASP A . n B 2 290 THR 290 383 383 THR THR A . n B 2 291 ILE 291 384 384 ILE ILE A . n B 2 292 GLU 292 385 385 GLU GLU A . n B 2 293 GLU 293 386 386 GLU GLU A . n B 2 294 HIS 294 387 387 HIS HIS A . n B 2 295 ARG 295 388 388 ARG ARG A . n B 2 296 GLN 296 389 389 GLN GLN A . n B 2 297 PHE 297 390 390 PHE PHE A . n B 2 298 GLY 298 391 391 GLY GLY A . n B 2 299 GLY 299 392 392 GLY GLY A . n B 2 300 ASN 300 393 393 ASN ASN A . n B 2 301 CYS 301 394 394 CYS CYS A . n B 2 302 ASP 302 395 395 ASP ASP A . n B 2 303 VAL 303 396 396 VAL VAL A . n B 2 304 ASP 304 397 397 ASP ASP A . n B 2 305 VAL 305 398 398 VAL VAL A . n B 2 306 SER 306 399 399 SER SER A . n B 2 307 PHE 307 400 400 PHE PHE A . n B 2 308 MET 308 401 401 MET MET A . n B 2 309 TYR 309 402 402 TYR TYR A . n B 2 310 LEU 310 403 403 LEU LEU A . n B 2 311 THR 311 404 404 THR THR A . n B 2 312 PHE 312 405 405 PHE PHE A . n B 2 313 PHE 313 406 406 PHE PHE A . n B 2 314 LEU 314 407 407 LEU LEU A . n B 2 315 GLU 315 408 408 GLU GLU A . n B 2 316 ASP 316 409 409 ASP ASP A . n B 2 317 ASP 317 410 410 ASP ASP A . n B 2 318 ASP 318 411 411 ASP ASP A . n B 2 319 LYS 319 412 412 LYS LYS A . n B 2 320 LEU 320 413 413 LEU LEU A . n B 2 321 GLU 321 414 414 GLU GLU A . n B 2 322 GLN 322 415 415 GLN GLN A . n B 2 323 ILE 323 416 416 ILE ILE A . n B 2 324 ARG 324 417 417 ARG ARG A . n B 2 325 LYS 325 418 418 LYS LYS A . n B 2 326 ASP 326 419 419 ASP ASP A . n B 2 327 TYR 327 420 420 TYR TYR A . n B 2 328 THR 328 421 421 THR THR A . n B 2 329 SER 329 422 422 SER SER A . n B 2 330 GLY 330 423 423 GLY GLY A . n B 2 331 ALA 331 424 424 ALA ALA A . n B 2 332 MET 332 425 425 MET MET A . n B 2 333 LEU 333 426 426 LEU LEU A . n B 2 334 THR 334 427 427 THR THR A . n B 2 335 GLY 335 428 428 GLY GLY A . n B 2 336 GLU 336 429 429 GLU GLU A . n B 2 337 LEU 337 430 430 LEU LEU A . n B 2 338 LYS 338 431 431 LYS LYS A . n B 2 339 LYS 339 432 432 LYS LYS A . n B 2 340 ALA 340 433 433 ALA ALA A . n B 2 341 LEU 341 434 434 LEU LEU A . n B 2 342 ILE 342 435 435 ILE ILE A . n B 2 343 GLU 343 436 436 GLU GLU A . n B 2 344 VAL 344 437 437 VAL VAL A . n B 2 345 LEU 345 438 438 LEU LEU A . n B 2 346 GLN 346 439 439 GLN GLN A . n B 2 347 PRO 347 440 440 PRO PRO A . n B 2 348 LEU 348 441 441 LEU LEU A . n B 2 349 ILE 349 442 442 ILE ILE A . n B 2 350 ALA 350 443 443 ALA ALA A . n B 2 351 GLU 351 444 444 GLU GLU A . n B 2 352 HIS 352 445 445 HIS HIS A . n B 2 353 GLN 353 446 446 GLN GLN A . n B 2 354 ALA 354 447 447 ALA ALA A . n B 2 355 ARG 355 448 448 ARG ARG A . n B 2 356 ARG 356 449 449 ARG ARG A . n B 2 357 LYS 357 450 450 LYS LYS A . n B 2 358 GLU 358 451 451 GLU GLU A . n B 2 359 VAL 359 452 452 VAL VAL A . n B 2 360 THR 360 453 453 THR THR A . n B 2 361 ASP 361 454 454 ASP ASP A . n B 2 362 GLU 362 455 455 GLU GLU A . n B 2 363 ILE 363 456 456 ILE ILE A . n B 2 364 VAL 364 457 457 VAL VAL A . n B 2 365 LYS 365 458 458 LYS LYS A . n B 2 366 GLU 366 459 459 GLU GLU A . n B 2 367 PHE 367 460 460 PHE PHE A . n B 2 368 MET 368 461 461 MET MET A . n B 2 369 THR 369 462 462 THR THR A . n B 2 370 PRO 370 463 463 PRO PRO A . n B 2 371 ARG 371 464 464 ARG ARG A . n B 2 372 LYS 372 465 465 LYS LYS A . n B 2 373 LEU 373 466 466 LEU LEU A . n B 2 374 SER 374 467 467 SER SER A . n B 2 375 PHE 375 468 468 PHE PHE A . n B 2 376 ASP 376 469 469 ASP ASP A . n B 2 377 PHE 377 470 ? ? ? A . n B 2 378 GLN 378 471 ? ? ? A . n B 2 379 HIS 379 472 ? ? ? A . n B 2 380 HIS 380 473 ? ? ? A . n B 2 381 HIS 381 474 ? ? ? A . n B 2 382 HIS 382 475 ? ? ? A . n B 2 383 HIS 383 476 ? ? ? A . n B 2 384 HIS 384 477 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 478 364 SO4 SO4 A . D 4 TRP 1 479 350 TRP TRP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+5/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 172.8750000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 XDS 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.520 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.087 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 109 ? ? -70.46 -158.76 2 1 VAL A 171 ? ? -23.05 -41.91 3 1 MET A 243 ? ? -141.12 54.74 4 1 SER A 290 ? ? -29.08 -48.78 5 1 ASN A 291 ? ? -67.77 14.67 6 1 ASP A 299 ? ? 48.85 14.16 7 1 ALA A 352 ? ? -65.60 0.73 8 1 ASP A 363 ? ? -48.45 155.98 9 1 HIS A 375 ? ? -142.61 -27.53 10 1 ASP A 382 ? ? -55.77 -74.14 11 1 LYS A 418 ? ? -61.55 -75.00 12 1 SER A 467 ? ? -14.32 -69.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 94 ? B SER 1 2 1 Y 1 A ALA 95 ? B ALA 2 3 1 Y 1 A LYS 96 ? B LYS 3 4 1 Y 1 A PHE 470 ? B PHE 377 5 1 Y 1 A GLN 471 ? B GLN 378 6 1 Y 1 A HIS 472 ? B HIS 379 7 1 Y 1 A HIS 473 ? B HIS 380 8 1 Y 1 A HIS 474 ? B HIS 381 9 1 Y 1 A HIS 475 ? B HIS 382 10 1 Y 1 A HIS 476 ? B HIS 383 11 1 Y 1 A HIS 477 ? B HIS 384 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 SO4 S S N N 411 SO4 O1 O N N 412 SO4 O2 O N N 413 SO4 O3 O N N 414 SO4 O4 O N N 415 THR N N N N 416 THR CA C N S 417 THR C C N N 418 THR O O N N 419 THR CB C N R 420 THR OG1 O N N 421 THR CG2 C N N 422 THR OXT O N N 423 THR H H N N 424 THR H2 H N N 425 THR HA H N N 426 THR HB H N N 427 THR HG1 H N N 428 THR HG21 H N N 429 THR HG22 H N N 430 THR HG23 H N N 431 THR HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 U OP3 O N N 484 U P P N N 485 U OP1 O N N 486 U OP2 O N N 487 U "O5'" O N N 488 U "C5'" C N N 489 U "C4'" C N R 490 U "O4'" O N N 491 U "C3'" C N S 492 U "O3'" O N N 493 U "C2'" C N R 494 U "O2'" O N N 495 U "C1'" C N R 496 U N1 N N N 497 U C2 C N N 498 U O2 O N N 499 U N3 N N N 500 U C4 C N N 501 U O4 O N N 502 U C5 C N N 503 U C6 C N N 504 U HOP3 H N N 505 U HOP2 H N N 506 U "H5'" H N N 507 U "H5''" H N N 508 U "H4'" H N N 509 U "H3'" H N N 510 U "HO3'" H N N 511 U "H2'" H N N 512 U "HO2'" H N N 513 U "H1'" H N N 514 U H3 H N N 515 U H5 H N N 516 U H6 H N N 517 VAL N N N N 518 VAL CA C N S 519 VAL C C N N 520 VAL O O N N 521 VAL CB C N N 522 VAL CG1 C N N 523 VAL CG2 C N N 524 VAL OXT O N N 525 VAL H H N N 526 VAL H2 H N N 527 VAL HA H N N 528 VAL HB H N N 529 VAL HG11 H N N 530 VAL HG12 H N N 531 VAL HG13 H N N 532 VAL HG21 H N N 533 VAL HG22 H N N 534 VAL HG23 H N N 535 VAL HXT H N N 536 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 SO4 S O1 doub N N 403 SO4 S O2 doub N N 404 SO4 S O3 sing N N 405 SO4 S O4 sing N N 406 THR N CA sing N N 407 THR N H sing N N 408 THR N H2 sing N N 409 THR CA C sing N N 410 THR CA CB sing N N 411 THR CA HA sing N N 412 THR C O doub N N 413 THR C OXT sing N N 414 THR CB OG1 sing N N 415 THR CB CG2 sing N N 416 THR CB HB sing N N 417 THR OG1 HG1 sing N N 418 THR CG2 HG21 sing N N 419 THR CG2 HG22 sing N N 420 THR CG2 HG23 sing N N 421 THR OXT HXT sing N N 422 TRP N CA sing N N 423 TRP N H sing N N 424 TRP N H2 sing N N 425 TRP CA C sing N N 426 TRP CA CB sing N N 427 TRP CA HA sing N N 428 TRP C O doub N N 429 TRP C OXT sing N N 430 TRP CB CG sing N N 431 TRP CB HB2 sing N N 432 TRP CB HB3 sing N N 433 TRP CG CD1 doub Y N 434 TRP CG CD2 sing Y N 435 TRP CD1 NE1 sing Y N 436 TRP CD1 HD1 sing N N 437 TRP CD2 CE2 doub Y N 438 TRP CD2 CE3 sing Y N 439 TRP NE1 CE2 sing Y N 440 TRP NE1 HE1 sing N N 441 TRP CE2 CZ2 sing Y N 442 TRP CE3 CZ3 doub Y N 443 TRP CE3 HE3 sing N N 444 TRP CZ2 CH2 doub Y N 445 TRP CZ2 HZ2 sing N N 446 TRP CZ3 CH2 sing Y N 447 TRP CZ3 HZ3 sing N N 448 TRP CH2 HH2 sing N N 449 TRP OXT HXT sing N N 450 TYR N CA sing N N 451 TYR N H sing N N 452 TYR N H2 sing N N 453 TYR CA C sing N N 454 TYR CA CB sing N N 455 TYR CA HA sing N N 456 TYR C O doub N N 457 TYR C OXT sing N N 458 TYR CB CG sing N N 459 TYR CB HB2 sing N N 460 TYR CB HB3 sing N N 461 TYR CG CD1 doub Y N 462 TYR CG CD2 sing Y N 463 TYR CD1 CE1 sing Y N 464 TYR CD1 HD1 sing N N 465 TYR CD2 CE2 doub Y N 466 TYR CD2 HD2 sing N N 467 TYR CE1 CZ doub Y N 468 TYR CE1 HE1 sing N N 469 TYR CE2 CZ sing Y N 470 TYR CE2 HE2 sing N N 471 TYR CZ OH sing N N 472 TYR OH HH sing N N 473 TYR OXT HXT sing N N 474 U OP3 P sing N N 475 U OP3 HOP3 sing N N 476 U P OP1 doub N N 477 U P OP2 sing N N 478 U P "O5'" sing N N 479 U OP2 HOP2 sing N N 480 U "O5'" "C5'" sing N N 481 U "C5'" "C4'" sing N N 482 U "C5'" "H5'" sing N N 483 U "C5'" "H5''" sing N N 484 U "C4'" "O4'" sing N N 485 U "C4'" "C3'" sing N N 486 U "C4'" "H4'" sing N N 487 U "O4'" "C1'" sing N N 488 U "C3'" "O3'" sing N N 489 U "C3'" "C2'" sing N N 490 U "C3'" "H3'" sing N N 491 U "O3'" "HO3'" sing N N 492 U "C2'" "O2'" sing N N 493 U "C2'" "C1'" sing N N 494 U "C2'" "H2'" sing N N 495 U "O2'" "HO2'" sing N N 496 U "C1'" N1 sing N N 497 U "C1'" "H1'" sing N N 498 U N1 C2 sing N N 499 U N1 C6 sing N N 500 U C2 O2 doub N N 501 U C2 N3 sing N N 502 U N3 C4 sing N N 503 U N3 H3 sing N N 504 U C4 O4 doub N N 505 U C4 C5 sing N N 506 U C5 C6 doub N N 507 U C5 H5 sing N N 508 U C6 H6 sing N N 509 VAL N CA sing N N 510 VAL N H sing N N 511 VAL N H2 sing N N 512 VAL CA C sing N N 513 VAL CA CB sing N N 514 VAL CA HA sing N N 515 VAL C O doub N N 516 VAL C OXT sing N N 517 VAL CB CG1 sing N N 518 VAL CB CG2 sing N N 519 VAL CB HB sing N N 520 VAL CG1 HG11 sing N N 521 VAL CG1 HG12 sing N N 522 VAL CG1 HG13 sing N N 523 VAL CG2 HG21 sing N N 524 VAL CG2 HG22 sing N N 525 VAL CG2 HG23 sing N N 526 VAL OXT HXT sing N N 527 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AKE 'double helix' 2AKE 'a-form double helix' 2AKE 'hairpin loop' 2AKE 'mismatched base pair' 2AKE 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 -1.155 -0.248 -0.561 15.292 2.412 -17.325 1 B_G1:C72_B B 1 ? B 72 ? ? ? 1 A C 3 1_555 A G 69 1_555 0.492 0.410 -0.751 20.059 -18.829 0.811 2 B_C3:G70_B B 3 ? B 70 ? 19 1 1 A C 4 1_555 A G 68 1_555 0.278 0.152 0.148 -6.884 -7.108 11.129 3 B_C4:G69_B B 4 ? B 69 ? 19 1 1 A U 5 1_555 A G 67 1_555 2.297 -0.546 0.922 -8.279 1.438 1.412 4 B_U5:G68_B B 5 ? B 68 ? 28 1 1 A C 6 1_555 A G 66 1_555 0.415 -0.045 -0.121 7.367 -18.345 6.559 5 B_C6:G67_B B 6 ? B 67 ? 19 1 1 A G 7 1_555 A C 65 1_555 0.564 -0.205 0.105 -3.033 -12.978 1.800 6 B_G7:C66_B B 7 ? B 66 ? 19 1 1 A G 48 1_555 A U 64 1_555 -2.575 -0.649 -0.070 3.305 -17.726 3.696 7 B_G49:U65_B B 49 ? B 65 ? 28 ? 1 A C 49 1_555 A G 63 1_555 -0.504 -0.406 0.070 0.194 -11.903 -2.003 8 B_C50:G64_B B 50 ? B 64 ? 19 1 1 A G 50 1_555 A C 62 1_555 0.536 0.015 -0.134 -11.111 -15.482 3.540 9 B_G51:C63_B B 51 ? B 63 ? 19 1 1 A U 51 1_555 A A 61 1_555 -0.089 -0.171 -0.049 10.138 -11.034 -3.212 10 B_U52:A62_B B 52 ? B 62 ? 20 1 1 A G 52 1_555 A C 60 1_555 -0.645 -0.536 0.522 -1.230 -26.039 -2.441 11 B_G53:C61_B B 53 ? B 61 ? 19 1 1 A U 53 1_555 A A 57 1_555 4.650 -2.080 0.064 -8.744 13.694 -84.879 12 B_U54:A58_B B 54 ? B 58 ? ? ? 1 A U 16 1_555 A G 56 1_555 -6.678 -2.861 0.183 1.188 -10.185 25.519 13 B_U16:G57_B B 16 ? B 57 ? ? ? 1 A A 14 1_555 A A 20 1_555 -5.640 0.058 0.373 41.745 10.980 64.303 14 B_A14:A21_B B 14 ? B 21 ? ? 5 1 A G 9 1_555 A G 44 1_555 3.661 -2.850 0.745 26.124 -53.427 -46.059 15 B_G9:G45_B B 9 ? B 45 ? ? ? 1 A G 25 1_555 A A 43 1_555 0.723 2.151 -0.170 24.239 -8.468 -5.071 16 B_G26:A44_B B 26 ? B 44 ? ? 1 1 A U 26 1_555 A A 42 1_555 -0.175 0.511 -1.607 26.179 -24.180 -23.048 17 B_U27:A43_B B 27 ? B 43 ? ? ? 1 A C 27 1_555 A G 41 1_555 -0.658 0.625 -1.193 19.183 -12.429 -7.881 18 B_C28:G42_B B 28 ? B 42 ? ? ? 1 A U 28 1_555 A A 40 1_555 0.055 0.067 -0.206 1.526 7.206 4.913 19 B_U29:A41_B B 29 ? B 41 ? 20 1 1 A G 29 1_555 A C 39 1_555 -0.543 0.261 -0.935 -19.865 -17.032 0.815 20 B_G30:C40_B B 30 ? B 40 ? 19 1 1 A A 30 1_555 A U 38 1_555 0.377 0.044 -0.484 -17.064 -21.097 0.643 21 B_A31:U39_B B 31 ? B 39 ? 20 1 1 A C 31 1_555 A A 37 1_555 2.066 0.103 0.796 -15.105 12.411 -106.004 22 B_C32:A38_B B 32 ? B 38 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 3 1_555 A G 69 1_555 A C 4 1_555 A G 68 1_555 -0.015 -2.105 3.790 -7.098 12.687 32.608 -5.373 -1.056 2.752 21.324 11.929 35.622 1 BB_C3C4:G69G70_BB B 3 ? B 70 ? B 4 ? B 69 ? 1 A C 4 1_555 A G 68 1_555 A U 5 1_555 A G 67 1_555 -0.394 -1.542 3.319 -6.418 1.459 36.190 -2.648 -0.264 3.276 2.325 10.227 36.764 2 BB_C4U5:G68G69_BB B 4 ? B 69 ? B 5 ? B 68 ? 1 A U 5 1_555 A G 67 1_555 A C 6 1_555 A G 66 1_555 0.248 -1.791 2.445 13.596 2.930 27.844 -3.762 1.471 2.138 5.663 -26.279 31.062 3 BB_U5C6:G67G68_BB B 5 ? B 68 ? B 6 ? B 67 ? 1 A C 6 1_555 A G 66 1_555 A G 7 1_555 A C 65 1_555 -0.034 -1.524 3.312 -1.124 18.835 31.663 -4.720 -0.084 2.107 31.289 1.867 36.735 4 BB_C6G7:C66G67_BB B 6 ? B 67 ? B 7 ? B 66 ? 1 A G 7 1_555 A C 65 1_555 A G 48 1_555 A U 64 1_555 -0.145 -1.942 2.841 0.990 11.391 22.974 -6.741 0.532 1.693 26.589 -2.311 25.628 5 BB_G7G49:U65C66_BB B 7 ? B 66 ? B 49 ? B 65 ? 1 A G 48 1_555 A U 64 1_555 A C 49 1_555 A G 63 1_555 -0.221 -1.836 3.498 -2.221 -1.328 38.840 -2.581 0.040 3.563 -1.994 3.335 38.923 6 BB_G49C50:G64U65_BB B 49 ? B 65 ? B 50 ? B 64 ? 1 A C 49 1_555 A G 63 1_555 A G 50 1_555 A C 62 1_555 -0.005 -1.573 3.390 3.234 18.501 36.647 -4.126 0.335 2.355 27.332 -4.778 41.032 7 BB_C50G51:C63G64_BB B 50 ? B 64 ? B 51 ? B 63 ? 1 A G 50 1_555 A C 62 1_555 A U 51 1_555 A A 61 1_555 0.010 -1.579 2.803 -0.931 -2.468 26.106 -2.893 -0.244 2.934 -5.446 2.055 26.236 8 BB_G51U52:A62C63_BB B 51 ? B 63 ? B 52 ? B 62 ? 1 A U 51 1_555 A A 61 1_555 A G 52 1_555 A C 60 1_555 1.945 -1.926 3.418 4.213 6.926 26.176 -5.813 -3.047 3.086 14.846 -9.030 27.382 9 BB_U52G53:C61A62_BB B 52 ? B 62 ? B 53 ? B 61 ? 1 A G 52 1_555 A C 60 1_555 A U 53 1_555 A A 57 1_555 -2.442 -1.822 3.647 3.766 -2.887 92.462 -1.200 1.768 3.611 -1.998 -2.606 92.556 10 BB_G53U54:A58C61_BB B 53 ? B 61 ? B 54 ? B 58 ? 1 A U 53 1_555 A A 57 1_555 A U 16 1_555 A G 56 1_555 -4.123 -1.766 5.604 -15.257 -2.640 81.461 -1.219 2.436 6.211 -2.007 11.597 82.667 11 BB_U54U16:G57A58_BB B 54 ? B 58 ? B 16 ? B 57 ? 1 A A 14 1_555 A A 20 1_555 A G 9 1_555 A G 44 1_555 -3.826 1.926 -4.107 -55.860 -104.535 -71.345 -2.605 -1.277 -2.713 62.510 -33.403 -130.935 12 BB_A14G9:G45A21_BB B 14 ? B 21 ? B 9 ? B 45 ? 1 A G 9 1_555 A G 44 1_555 A G 25 1_555 A A 43 1_555 -2.891 -1.360 5.970 71.624 -33.808 -88.219 1.743 0.226 6.105 21.311 45.148 -112.822 13 BB_G9G26:A44G45_BB B 9 ? B 45 ? B 26 ? B 44 ? 1 A U 26 1_555 A A 42 1_555 A C 27 1_555 A G 41 1_555 0.915 -1.585 3.611 -1.556 11.210 35.318 -4.042 -1.655 2.947 17.917 2.487 37.032 14 BB_U27C28:G42A43_BB B 27 ? B 43 ? B 28 ? B 42 ? 1 A C 27 1_555 A G 41 1_555 A U 28 1_555 A A 40 1_555 -0.312 -2.694 3.752 -14.478 14.411 35.577 -5.481 -1.183 2.471 21.539 21.638 40.859 15 BB_C28U29:A41G42_BB B 28 ? B 42 ? B 29 ? B 41 ? 1 A U 28 1_555 A A 40 1_555 A G 29 1_555 A C 39 1_555 -0.515 -1.683 3.695 5.265 16.480 28.870 -5.592 1.747 2.302 29.906 -9.555 33.562 16 BB_U29G30:C40A41_BB B 29 ? B 41 ? B 30 ? B 40 ? 1 A G 29 1_555 A C 39 1_555 A A 30 1_555 A U 38 1_555 -0.127 -1.305 3.443 -2.686 4.988 34.498 -2.946 -0.206 3.229 8.341 4.491 34.946 17 BB_G30A31:U39C40_BB B 30 ? B 40 ? B 31 ? B 39 ? 1 A A 30 1_555 A U 38 1_555 A C 31 1_555 A A 37 1_555 0.092 -1.393 3.209 4.345 15.196 90.572 -1.253 0.017 3.002 10.626 -3.038 91.645 18 BB_A31C32:A38U39_BB B 31 ? B 39 ? B 32 ? B 38 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 TRYPTOPHAN TRP # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1O5T _pdbx_initial_refinement_model.details 'PDB ENTRY 1O5T' #