HEADER ISOMERASE 12-AUG-05 2AO2 TITLE THE 2.07 ANGSTROM CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS TITLE 2 CHORISMATE MUTASE REVEALS UNEXPECTED GENE DUPLICATION AND SUGGESTS A TITLE 3 ROLE IN HOST-PATHOGEN INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE MUTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 35-199; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN RV1885C; COMPND 6 EC: 5.4.99.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV1885C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS CHORISMATE MUTASE, TRYPTOPHAN, GENE DUPLICATION, ALLOSTERY, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.QAMRA,P.PRAKASH,B.ARUNA,S.E.HASNAIN,S.C.MANDE,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 5 09-OCT-24 2AO2 1 REMARK REVDAT 4 13-JUL-11 2AO2 1 VERSN REVDAT 3 24-FEB-09 2AO2 1 VERSN REVDAT 2 24-OCT-06 2AO2 1 AUTHOR KEYWDS REMARK REVDAT 1 13-JUN-06 2AO2 0 JRNL AUTH R.QAMRA,P.PRAKASH,B.ARUNA,S.E.HASNAIN,S.C.MANDE JRNL TITL THE 2.15 A CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 CHORISMATE MUTASE REVEALS AN UNEXPECTED GENE DUPLICATION AND JRNL TITL 3 SUGGESTS A ROLE IN HOST-PATHOGEN INTERACTIONS. JRNL REF BIOCHEMISTRY V. 45 6997 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16752890 JRNL DOI 10.1021/BI0606445 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 36540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1693 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3879 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4034 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3597 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5502 ; 1.466 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8346 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;34.297 ;23.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;14.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4506 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 813 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 969 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3521 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2009 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2250 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 175 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.077 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 148 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3217 ; 1.613 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 984 ; 0.354 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4032 ; 2.100 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 5.069 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1470 ; 7.037 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5541 45.1018 -1.5778 REMARK 3 T TENSOR REMARK 3 T11: -0.1837 T22: -0.1927 REMARK 3 T33: -0.2280 T12: -0.0160 REMARK 3 T13: -0.0074 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 8.3453 L22: 0.4399 REMARK 3 L33: 1.8373 L12: -0.7077 REMARK 3 L13: -3.0453 L23: 0.0595 REMARK 3 S TENSOR REMARK 3 S11: 0.2174 S12: 0.0946 S13: 0.3451 REMARK 3 S21: -0.0976 S22: -0.0744 S23: 0.0298 REMARK 3 S31: -0.0983 S32: -0.0837 S33: -0.1430 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9819 37.1900 -0.7781 REMARK 3 T TENSOR REMARK 3 T11: -0.1772 T22: -0.2116 REMARK 3 T33: -0.1552 T12: -0.0514 REMARK 3 T13: -0.0155 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 5.2766 L22: 1.0589 REMARK 3 L33: 1.8940 L12: -0.1539 REMARK 3 L13: -1.5998 L23: -0.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: 0.2242 S13: -0.5181 REMARK 3 S21: -0.1325 S22: 0.0153 S23: 0.1712 REMARK 3 S31: 0.2759 S32: -0.1168 S33: 0.0600 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9288 58.1088 32.5260 REMARK 3 T TENSOR REMARK 3 T11: -0.1798 T22: -0.0963 REMARK 3 T33: -0.1491 T12: -0.0288 REMARK 3 T13: 0.0477 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.7623 L22: 5.4344 REMARK 3 L33: 5.3510 L12: -0.9344 REMARK 3 L13: -0.5437 L23: 5.2494 REMARK 3 S TENSOR REMARK 3 S11: -0.1701 S12: -0.0195 S13: -0.1335 REMARK 3 S21: 0.3947 S22: -0.1301 S23: 0.4489 REMARK 3 S31: 0.4222 S32: -0.2583 S33: 0.3002 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2651 59.5895 23.3772 REMARK 3 T TENSOR REMARK 3 T11: -0.1576 T22: -0.0954 REMARK 3 T33: -0.2373 T12: 0.0040 REMARK 3 T13: -0.0147 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.0317 L22: 6.9858 REMARK 3 L33: 4.8846 L12: 0.1182 REMARK 3 L13: -0.6089 L23: 4.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: 0.0002 S13: 0.1036 REMARK 3 S21: -0.0778 S22: 0.0488 S23: 0.4121 REMARK 3 S31: -0.3164 S32: -0.2269 S33: 0.1288 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 35 C 119 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4252 31.9854 6.6476 REMARK 3 T TENSOR REMARK 3 T11: -0.1086 T22: -0.0155 REMARK 3 T33: -0.1909 T12: -0.0973 REMARK 3 T13: -0.0768 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.8415 L22: 7.2744 REMARK 3 L33: 4.6760 L12: 2.7136 REMARK 3 L13: -1.7185 L23: -5.3855 REMARK 3 S TENSOR REMARK 3 S11: -0.3476 S12: 0.4270 S13: 0.0774 REMARK 3 S21: -0.8418 S22: 0.4037 S23: 0.2919 REMARK 3 S31: 0.5755 S32: -0.3234 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 120 C 199 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9299 41.0680 6.6119 REMARK 3 T TENSOR REMARK 3 T11: -0.2209 T22: 0.0402 REMARK 3 T33: -0.0247 T12: -0.0020 REMARK 3 T13: -0.0764 T23: 0.1179 REMARK 3 L TENSOR REMARK 3 L11: 5.0230 L22: 5.9117 REMARK 3 L33: 5.6939 L12: 2.8473 REMARK 3 L13: -1.9553 L23: -4.3914 REMARK 3 S TENSOR REMARK 3 S11: -0.1375 S12: 0.4872 S13: 0.4894 REMARK 3 S21: -0.3747 S22: 0.6471 S23: 0.7164 REMARK 3 S31: 0.1695 S32: -0.8578 S33: -0.5096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-04; 15-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL41XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 0.97955, 0.97975, 0.98090 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 69.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.22600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.22600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.45200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 68 O HOH A 1262 2.10 REMARK 500 N ILE C 67 OXT TRP B 2001 2.14 REMARK 500 O2 SO4 A 1201 O HOH A 1214 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 178 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 38 -37.26 98.70 REMARK 500 GLU B 126 90.79 -6.50 REMARK 500 PRO B 128 129.07 -39.75 REMARK 500 ASP B 129 110.35 -22.80 REMARK 500 LEU C 130 -46.16 -18.27 REMARK 500 SER C 131 -69.67 -24.32 REMARK 500 PRO C 198 81.68 -52.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 198 ALA A 199 149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV1885C RELATED DB: TARGETDB DBREF 2AO2 A 35 199 UNP O07746 O07746_MYCTU 35 199 DBREF 2AO2 B 35 199 UNP O07746 O07746_MYCTU 35 199 DBREF 2AO2 C 35 199 UNP O07746 O07746_MYCTU 35 199 SEQRES 1 A 165 GLY THR SER GLN LEU ALA GLU LEU VAL ASP ALA ALA ALA SEQRES 2 A 165 GLU ARG LEU GLU VAL ALA ASP PRO VAL ALA ALA PHE LYS SEQRES 3 A 165 TRP ARG ALA GLN LEU PRO ILE GLU ASP SER GLY ARG VAL SEQRES 4 A 165 GLU GLN GLN LEU ALA LYS LEU GLY GLU ASP ALA ARG SER SEQRES 5 A 165 GLN HIS ILE ASP PRO ASP TYR VAL THR ARG VAL PHE ASP SEQRES 6 A 165 ASP GLN ILE ARG ALA THR GLU ALA ILE GLU TYR SER ARG SEQRES 7 A 165 PHE SER ASP TRP LYS LEU ASN PRO ALA SER ALA PRO PRO SEQRES 8 A 165 GLU PRO PRO ASP LEU SER ALA SER ARG SER ALA ILE ASP SEQRES 9 A 165 SER LEU ASN ASN ARG MET LEU SER GLN ILE TRP SER HIS SEQRES 10 A 165 TRP SER LEU LEU SER ALA PRO SER CYS ALA ALA GLN LEU SEQRES 11 A 165 ASP ARG ALA LYS ARG ASP ILE VAL ARG SER ARG HIS LEU SEQRES 12 A 165 ASP SER LEU TYR GLN ARG ALA LEU THR THR ALA THR GLN SEQRES 13 A 165 SER TYR CYS GLN ALA LEU PRO PRO ALA SEQRES 1 B 165 GLY THR SER GLN LEU ALA GLU LEU VAL ASP ALA ALA ALA SEQRES 2 B 165 GLU ARG LEU GLU VAL ALA ASP PRO VAL ALA ALA PHE LYS SEQRES 3 B 165 TRP ARG ALA GLN LEU PRO ILE GLU ASP SER GLY ARG VAL SEQRES 4 B 165 GLU GLN GLN LEU ALA LYS LEU GLY GLU ASP ALA ARG SER SEQRES 5 B 165 GLN HIS ILE ASP PRO ASP TYR VAL THR ARG VAL PHE ASP SEQRES 6 B 165 ASP GLN ILE ARG ALA THR GLU ALA ILE GLU TYR SER ARG SEQRES 7 B 165 PHE SER ASP TRP LYS LEU ASN PRO ALA SER ALA PRO PRO SEQRES 8 B 165 GLU PRO PRO ASP LEU SER ALA SER ARG SER ALA ILE ASP SEQRES 9 B 165 SER LEU ASN ASN ARG MET LEU SER GLN ILE TRP SER HIS SEQRES 10 B 165 TRP SER LEU LEU SER ALA PRO SER CYS ALA ALA GLN LEU SEQRES 11 B 165 ASP ARG ALA LYS ARG ASP ILE VAL ARG SER ARG HIS LEU SEQRES 12 B 165 ASP SER LEU TYR GLN ARG ALA LEU THR THR ALA THR GLN SEQRES 13 B 165 SER TYR CYS GLN ALA LEU PRO PRO ALA SEQRES 1 C 165 GLY THR SER GLN LEU ALA GLU LEU VAL ASP ALA ALA ALA SEQRES 2 C 165 GLU ARG LEU GLU VAL ALA ASP PRO VAL ALA ALA PHE LYS SEQRES 3 C 165 TRP ARG ALA GLN LEU PRO ILE GLU ASP SER GLY ARG VAL SEQRES 4 C 165 GLU GLN GLN LEU ALA LYS LEU GLY GLU ASP ALA ARG SER SEQRES 5 C 165 GLN HIS ILE ASP PRO ASP TYR VAL THR ARG VAL PHE ASP SEQRES 6 C 165 ASP GLN ILE ARG ALA THR GLU ALA ILE GLU TYR SER ARG SEQRES 7 C 165 PHE SER ASP TRP LYS LEU ASN PRO ALA SER ALA PRO PRO SEQRES 8 C 165 GLU PRO PRO ASP LEU SER ALA SER ARG SER ALA ILE ASP SEQRES 9 C 165 SER LEU ASN ASN ARG MET LEU SER GLN ILE TRP SER HIS SEQRES 10 C 165 TRP SER LEU LEU SER ALA PRO SER CYS ALA ALA GLN LEU SEQRES 11 C 165 ASP ARG ALA LYS ARG ASP ILE VAL ARG SER ARG HIS LEU SEQRES 12 C 165 ASP SER LEU TYR GLN ARG ALA LEU THR THR ALA THR GLN SEQRES 13 C 165 SER TYR CYS GLN ALA LEU PRO PRO ALA HET SO4 A1201 5 HET SO4 A1203 5 HET TRP A1001 15 HET SO4 B1204 5 HET TRP B2001 30 HET SO4 C1202 5 HET SO4 C1205 5 HETNAM SO4 SULFATE ION HETNAM TRP TRYPTOPHAN FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 TRP 2(C11 H12 N2 O2) FORMUL 11 HOH *218(H2 O) HELIX 1 1 LEU A 39 VAL A 52 1 14 HELIX 2 2 VAL A 52 GLN A 64 1 13 HELIX 3 3 ASP A 69 GLN A 87 1 19 HELIX 4 4 ASP A 90 ASN A 119 1 30 HELIX 5 5 PRO A 120 ALA A 123 5 4 HELIX 6 6 ASP A 129 HIS A 151 1 23 HELIX 7 7 HIS A 151 SER A 156 1 6 HELIX 8 8 SER A 159 ARG A 175 1 17 HELIX 9 9 ASP A 178 GLN A 190 1 13 HELIX 10 10 SER A 191 ALA A 195 5 5 HELIX 11 11 LEU B 39 VAL B 52 1 14 HELIX 12 12 VAL B 52 GLN B 64 1 13 HELIX 13 13 ASP B 69 GLN B 87 1 19 HELIX 14 14 ASP B 90 ASN B 119 1 30 HELIX 15 15 PRO B 120 ALA B 123 5 4 HELIX 16 16 ASP B 129 HIS B 151 1 23 HELIX 17 17 HIS B 151 SER B 156 1 6 HELIX 18 18 SER B 159 ARG B 175 1 17 HELIX 19 19 ASP B 178 THR B 189 1 12 HELIX 20 20 SER B 191 ALA B 195 5 5 HELIX 21 21 LEU C 39 GLU C 51 1 13 HELIX 22 22 VAL C 52 GLN C 64 1 13 HELIX 23 23 ASP C 69 GLN C 87 1 19 HELIX 24 24 ASP C 90 ASN C 119 1 30 HELIX 25 25 PRO C 120 ALA C 123 5 4 HELIX 26 26 LEU C 130 HIS C 151 1 22 HELIX 27 27 HIS C 151 SER C 156 1 6 HELIX 28 28 SER C 159 ARG C 175 1 17 HELIX 29 29 ASP C 178 GLN C 190 1 13 HELIX 30 30 SER C 191 ALA C 195 5 5 SSBOND 1 CYS A 160 CYS A 193 1555 1555 2.14 SSBOND 2 CYS B 160 CYS B 193 1555 1555 2.13 SSBOND 3 CYS C 160 CYS C 193 1555 1555 2.10 SITE 1 AC1 3 ASP A 178 SER A 179 HOH A1214 SITE 1 AC2 2 ASP C 178 SER C 179 SITE 1 AC3 4 LYS A 60 ARG A 72 GLN A 76 ARG A 134 SITE 1 AC4 5 LYS B 60 ARG B 72 GLN B 76 HOH B2056 SITE 2 AC4 5 HOH B2058 SITE 1 AC5 4 LYS C 60 ARG C 72 GLN C 76 HOH C1262 SITE 1 AC6 7 LEU A 65 PRO A 66 ILE A 67 GLU A 68 SITE 2 AC6 7 TYR A 110 PHE A 113 HOH A1261 SITE 1 AC7 12 LEU B 65 PRO B 66 ILE B 67 GLU B 68 SITE 2 AC7 12 TYR B 110 PHE B 113 HOH B2057 LEU C 65 SITE 3 AC7 12 PRO C 66 ILE C 67 GLU C 68 TYR C 110 CRYST1 124.452 83.840 62.671 90.00 93.36 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008040 0.000000 0.000470 0.00000 SCALE2 0.000000 0.011930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015980 0.00000