HEADER TRANSFERASE 16-AUG-05 2APC TITLE CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINYLTRANSFERASE I IN COMPLEX WITH TITLE 2 UDP-GLCNAC PHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 106-447; COMPND 6 SYNONYM: N-GLYCOSYL-OLIGOSACCHARIDE-GLYCOPROTEIN N- COMPND 7 ACETYLGLUCOSAMINYLTRANSFERASE I, GNT-I, GLCNAC-T I; COMPND 8 EC: 2.4.1.101; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 CELL_LINE: GNT1-5G5; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS TRANSFERASE, N-ACETYLGLUCOSAMINYLTRANSFERASE, GLYCOSYLTRANSFERASE, KEYWDS 2 UDP-GLCNAC, UDP-GLCNAC PHOSPHONATE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RINI,R.D.GORDON REVDAT 5 23-AUG-23 2APC 1 REMARK LINK REVDAT 4 13-JUL-11 2APC 1 VERSN REVDAT 3 24-FEB-09 2APC 1 VERSN REVDAT 2 18-JUL-06 2APC 1 JRNL REVDAT 1 27-JUN-06 2APC 0 JRNL AUTH R.D.GORDON,P.SIVARAJAH,M.SATKUNARAJAH,D.MA,C.A.TARLING, JRNL AUTH 2 D.VIZITIU,S.G.WITHERS,J.M.RINI JRNL TITL X-RAY CRYSTAL STRUCTURES OF RABBIT JRNL TITL 2 N-ACETYLGLUCOSAMINYLTRANSFERASE I (GNT I) IN COMPLEX WITH JRNL TITL 3 DONOR SUBSTRATE ANALOGUES. JRNL REF J.MOL.BIOL. V. 360 67 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16769084 JRNL DOI 10.1016/J.JMB.2006.04.058 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 54569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5527 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7332 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 824 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.05 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.980 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.090 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 35.84 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GLYCEROL.PARAM REMARK 3 PARAMETER FILE 5 : UDM.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_NOHYDROGEN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GLYCEROL.TOP REMARK 3 TOPOLOGY FILE 5 : UDM.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2APC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9363 REMARK 200 MONOCHROMATOR : SYCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1FOA, 1FO9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M TRIS PH 7.9, 40% PEG 6000, MNCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.48200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.21100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.24950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.21100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.48200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.24950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 406 C ASP A 407 N 0.230 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 239 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 MET A 406 O - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 115 -84.16 -149.87 REMARK 500 THR A 119 3.82 -69.49 REMARK 500 CYS A 145 -44.48 77.63 REMARK 500 HIS A 330 -58.05 -140.30 REMARK 500 MET A 406 138.85 -28.93 REMARK 500 ALA A 416 17.87 57.31 REMARK 500 ASP A 440 55.80 -148.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 405 16.31 REMARK 500 MET A 406 -25.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 448 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD2 REMARK 620 2 UDM A 449 O1A 91.9 REMARK 620 3 UDM A 449 O1B 174.8 83.0 REMARK 620 4 HOH A 492 O 87.9 98.6 92.3 REMARK 620 5 HOH A 539 O 88.9 169.9 96.2 91.5 REMARK 620 6 HOH A 564 O 83.2 81.5 96.5 171.2 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDM A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 455 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FOA RELATED DB: PDB REMARK 900 GNT-I IN COMPLEX WITH UDP-GLCNAC REMARK 900 RELATED ID: 1FO9 RELATED DB: PDB REMARK 900 GNT-I APO STRUCTURE REMARK 900 RELATED ID: 1FO8 RELATED DB: PDB REMARK 900 GNT-I METHYLMERCURY DERIVATIVE DBREF 2APC A 106 447 UNP P27115 MGAT1_RABIT 106 447 SEQRES 1 A 342 ALA VAL ILE PRO ILE LEU VAL ILE ALA CYS ASP ARG SER SEQRES 2 A 342 THR VAL ARG ARG CYS LEU ASP LYS LEU LEU HIS TYR ARG SEQRES 3 A 342 PRO SER ALA GLU LEU PHE PRO ILE ILE VAL SER GLN ASP SEQRES 4 A 342 CYS GLY HIS GLU GLU THR ALA GLN VAL ILE ALA SER TYR SEQRES 5 A 342 GLY SER ALA VAL THR HIS ILE ARG GLN PRO ASP LEU SER SEQRES 6 A 342 ASN ILE ALA VAL GLN PRO ASP HIS ARG LYS PHE GLN GLY SEQRES 7 A 342 TYR TYR LYS ILE ALA ARG HIS TYR ARG TRP ALA LEU GLY SEQRES 8 A 342 GLN ILE PHE HIS ASN PHE ASN TYR PRO ALA ALA VAL VAL SEQRES 9 A 342 VAL GLU ASP ASP LEU GLU VAL ALA PRO ASP PHE PHE GLU SEQRES 10 A 342 TYR PHE GLN ALA THR TYR PRO LEU LEU LYS ALA ASP PRO SEQRES 11 A 342 SER LEU TRP CYS VAL SER ALA TRP ASN ASP ASN GLY LYS SEQRES 12 A 342 GLU GLN MET VAL ASP SER SER LYS PRO GLU LEU LEU TYR SEQRES 13 A 342 ARG THR ASP PHE PHE PRO GLY LEU GLY TRP LEU LEU LEU SEQRES 14 A 342 ALA GLU LEU TRP ALA GLU LEU GLU PRO LYS TRP PRO LYS SEQRES 15 A 342 ALA PHE TRP ASP ASP TRP MET ARG ARG PRO GLU GLN ARG SEQRES 16 A 342 LYS GLY ARG ALA CYS VAL ARG PRO GLU ILE SER ARG THR SEQRES 17 A 342 MET THR PHE GLY ARG LYS GLY VAL SER HIS GLY GLN PHE SEQRES 18 A 342 PHE ASP GLN HIS LEU LYS PHE ILE LYS LEU ASN GLN GLN SEQRES 19 A 342 PHE VAL PRO PHE THR GLN LEU ASP LEU SER TYR LEU GLN SEQRES 20 A 342 GLN GLU ALA TYR ASP ARG ASP PHE LEU ALA ARG VAL TYR SEQRES 21 A 342 GLY ALA PRO GLN LEU GLN VAL GLU LYS VAL ARG THR ASN SEQRES 22 A 342 ASP ARG LYS GLU LEU GLY GLU VAL ARG VAL GLN TYR THR SEQRES 23 A 342 GLY ARG ASP SER PHE LYS ALA PHE ALA LYS ALA LEU GLY SEQRES 24 A 342 VAL MET ASP ASP LEU LYS SER GLY VAL PRO ARG ALA GLY SEQRES 25 A 342 TYR ARG GLY ILE VAL THR PHE LEU PHE ARG GLY ARG ARG SEQRES 26 A 342 VAL HIS LEU ALA PRO PRO GLN THR TRP ASP GLY TYR ASP SEQRES 27 A 342 PRO SER TRP THR HET MN A 448 1 HET UDM A 449 39 HET GOL A 450 6 HET GOL A 451 6 HET GOL A 452 6 HET GOL A 453 6 HET GOL A 454 6 HET GOL A 455 6 HETNAM MN MANGANESE (II) ION HETNAM UDM URIDINE-DIPHOSPHATE-METHYLENE-N-ACETYL-GLUCOSAMINE HETNAM GOL GLYCEROL HETSYN UDM ((2S,3R,4R,5S,6R)-3-ACETAMIDO-4,5-DIHYDROXY-6- HETSYN 2 UDM (HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YL) HETSYN 3 UDM METHYLPHOSPHONIC (((2R,3S,4R,5R)-5-(2,4-DIOXO-3,4- HETSYN 4 UDM DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXY- HETSYN 5 UDM TETRAHYDROFURAN-2-YL)METHYL PHOSPHORIC) ANHYDRIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MN MN 2+ FORMUL 3 UDM C18 H29 N3 O16 P2 FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 HOH *278(H2 O) HELIX 1 1 THR A 119 ARG A 131 1 13 HELIX 2 2 HIS A 147 SER A 156 1 10 HELIX 3 3 TYR A 157 VAL A 161 5 5 HELIX 4 4 HIS A 178 LYS A 180 5 3 HELIX 5 5 PHE A 181 ASN A 201 1 21 HELIX 6 6 ASP A 219 ASP A 234 1 16 HELIX 7 7 LYS A 248 VAL A 252 5 5 HELIX 8 8 ALA A 275 GLU A 282 1 8 HELIX 9 9 PRO A 283 TRP A 285 5 3 HELIX 10 10 PHE A 289 ARG A 295 1 7 HELIX 11 11 ARG A 296 LYS A 301 1 6 HELIX 12 12 GLY A 324 HIS A 330 1 7 HELIX 13 13 LEU A 331 ILE A 334 5 4 HELIX 14 14 PRO A 342 LEU A 346 5 5 HELIX 15 15 LEU A 348 LEU A 351 5 4 HELIX 16 16 GLN A 352 ALA A 367 1 16 HELIX 17 17 GLN A 371 THR A 377 1 7 HELIX 18 18 GLY A 392 LEU A 403 1 12 SHEET 1 A 8 THR A 162 ARG A 165 0 SHEET 2 A 8 ILE A 139 GLN A 143 1 N GLN A 143 O ILE A 164 SHEET 3 A 8 ILE A 110 ALA A 114 1 N VAL A 112 O ILE A 140 SHEET 4 A 8 ALA A 206 GLU A 211 1 O VAL A 210 N LEU A 111 SHEET 5 A 8 TRP A 271 LEU A 274 -1 O TRP A 271 N VAL A 209 SHEET 6 A 8 LEU A 237 SER A 241 -1 N VAL A 240 O LEU A 272 SHEET 7 A 8 ALA A 304 PRO A 308 1 O VAL A 306 N SER A 241 SHEET 8 A 8 LEU A 260 THR A 263 -1 N TYR A 261 O ARG A 307 SHEET 1 B 2 LEU A 214 VAL A 216 0 SHEET 2 B 2 THR A 313 THR A 315 -1 O MET A 314 N GLU A 215 SHEET 1 C 3 GLU A 385 GLN A 389 0 SHEET 2 C 3 ARG A 429 ALA A 434 1 O HIS A 432 N VAL A 388 SHEET 3 C 3 VAL A 422 PHE A 426 -1 N VAL A 422 O LEU A 433 SHEET 1 D 2 LEU A 409 LYS A 410 0 SHEET 2 D 2 VAL A 413 PRO A 414 -1 O VAL A 413 N LYS A 410 SSBOND 1 CYS A 115 CYS A 145 1555 1555 2.04 SSBOND 2 CYS A 239 CYS A 305 1555 1555 2.08 LINK OD2 ASP A 213 MN MN A 448 1555 1555 2.17 LINK MN MN A 448 O1A UDM A 449 1555 1555 2.24 LINK MN MN A 448 O1B UDM A 449 1555 1555 2.17 LINK MN MN A 448 O HOH A 492 1555 1555 2.18 LINK MN MN A 448 O HOH A 539 1555 1555 2.14 LINK MN MN A 448 O HOH A 564 1555 1555 2.29 SITE 1 AC1 5 ASP A 213 UDM A 449 HOH A 492 HOH A 539 SITE 2 AC1 5 HOH A 564 SITE 1 AC2 35 ILE A 113 ALA A 114 CYS A 115 ARG A 117 SITE 2 AC2 35 ASP A 144 CYS A 145 TYR A 184 LYS A 186 SITE 3 AC2 35 ILE A 187 HIS A 190 GLU A 211 ASP A 212 SITE 4 AC2 35 ASP A 213 LEU A 269 TRP A 290 ASP A 291 SITE 5 AC2 35 GLY A 320 VAL A 321 SER A 322 LEU A 331 SITE 6 AC2 35 MN A 448 GOL A 450 HOH A 459 HOH A 482 SITE 7 AC2 35 HOH A 494 HOH A 525 HOH A 564 HOH A 644 SITE 8 AC2 35 HOH A 645 HOH A 646 HOH A 647 HOH A 648 SITE 9 AC2 35 HOH A 650 HOH A 706 HOH A 707 SITE 1 AC3 6 PHE A 289 ASP A 291 ASP A 292 UDM A 449 SITE 2 AC3 6 HOH A 650 HOH A 728 SITE 1 AC4 7 ARG A 131 ILE A 139 ILE A 140 SER A 159 SITE 2 AC4 7 ALA A 160 VAL A 161 THR A 162 SITE 1 AC5 8 TYR A 390 GLY A 412 PRO A 435 TRP A 439 SITE 2 AC5 8 GLY A 441 TYR A 442 ASP A 443 TRP A 446 SITE 1 AC6 5 GLU A 149 ARG A 189 ARG A 192 HOH A 499 SITE 2 AC6 5 HOH A 552 SITE 1 AC7 6 ASP A 116 PRO A 167 HOH A 525 HOH A 541 SITE 2 AC7 6 HOH A 580 HOH A 707 SITE 1 AC8 7 PRO A 235 LEU A 237 LEU A 274 ARG A 303 SITE 2 AC8 7 HOH A 486 HOH A 510 HOH A 710 CRYST1 40.964 82.499 102.422 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009764 0.00000