data_2ASF # _entry.id 2ASF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ASF RCSB RCSB034259 WWPDB D_1000034259 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1xxo . unspecified TargetDB Rv2074 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ASF _pdbx_database_status.recvd_initial_deposition_date 2005-08-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Biswal, B.K.' 1 'Au, K.' 2 'Cherney, M.M.' 3 'Garen, C.' 4 'James, M.N.' 5 'TB Structural Genomics Consortium (TBSGC)' 6 # _citation.id primary _citation.title ;The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 62 _citation.page_first 735 _citation.page_last 742 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16880544 _citation.pdbx_database_id_DOI 10.1107/S1744309106025012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Biswal, B.K.' 1 primary 'Au, K.' 2 primary 'Cherney, M.M.' 3 primary 'Garen, C.' 4 primary 'James, M.N.' 5 # _cell.entry_id 2ASF _cell.length_a 73.395 _cell.length_b 73.395 _cell.length_c 44.794 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ASF _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein Rv2074' 15106.776 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 2 ? ? ? ? 4 water nat water 18.015 175 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VA(MSE)VNTTTRLSDDALAFLSERHLA(MSE)LTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAV LSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLDRA ; _entity_poly.pdbx_seq_one_letter_code_can ;VAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGAR WLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLDRA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier Rv2074 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ALA n 1 3 MSE n 1 4 VAL n 1 5 ASN n 1 6 THR n 1 7 THR n 1 8 THR n 1 9 ARG n 1 10 LEU n 1 11 SER n 1 12 ASP n 1 13 ASP n 1 14 ALA n 1 15 LEU n 1 16 ALA n 1 17 PHE n 1 18 LEU n 1 19 SER n 1 20 GLU n 1 21 ARG n 1 22 HIS n 1 23 LEU n 1 24 ALA n 1 25 MSE n 1 26 LEU n 1 27 THR n 1 28 THR n 1 29 LEU n 1 30 ARG n 1 31 ALA n 1 32 ASP n 1 33 ASN n 1 34 SER n 1 35 PRO n 1 36 HIS n 1 37 VAL n 1 38 VAL n 1 39 ALA n 1 40 VAL n 1 41 GLY n 1 42 PHE n 1 43 THR n 1 44 PHE n 1 45 ASP n 1 46 PRO n 1 47 LYS n 1 48 THR n 1 49 HIS n 1 50 ILE n 1 51 ALA n 1 52 ARG n 1 53 VAL n 1 54 ILE n 1 55 THR n 1 56 THR n 1 57 GLY n 1 58 GLY n 1 59 SER n 1 60 GLN n 1 61 LYS n 1 62 ALA n 1 63 VAL n 1 64 ASN n 1 65 ALA n 1 66 ASP n 1 67 ARG n 1 68 SER n 1 69 GLY n 1 70 LEU n 1 71 ALA n 1 72 VAL n 1 73 LEU n 1 74 SER n 1 75 GLN n 1 76 VAL n 1 77 ASP n 1 78 GLY n 1 79 ALA n 1 80 ARG n 1 81 TRP n 1 82 LEU n 1 83 SER n 1 84 LEU n 1 85 GLU n 1 86 GLY n 1 87 ARG n 1 88 ALA n 1 89 ALA n 1 90 VAL n 1 91 ASN n 1 92 SER n 1 93 ASP n 1 94 ILE n 1 95 ASP n 1 96 ALA n 1 97 VAL n 1 98 ARG n 1 99 ASP n 1 100 ALA n 1 101 GLU n 1 102 LEU n 1 103 ARG n 1 104 TYR n 1 105 ALA n 1 106 GLN n 1 107 ARG n 1 108 TYR n 1 109 ARG n 1 110 THR n 1 111 PRO n 1 112 ARG n 1 113 PRO n 1 114 ASN n 1 115 PRO n 1 116 ARG n 1 117 ARG n 1 118 VAL n 1 119 VAL n 1 120 ILE n 1 121 GLU n 1 122 VAL n 1 123 GLN n 1 124 ILE n 1 125 GLU n 1 126 ARG n 1 127 VAL n 1 128 LEU n 1 129 GLY n 1 130 SER n 1 131 ALA n 1 132 ASP n 1 133 LEU n 1 134 LEU n 1 135 ASP n 1 136 ARG n 1 137 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Mycobacterium _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y2074_MYCTU _struct_ref.pdbx_db_accession Q10682 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAMVNTTTRLSDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGAR WLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLDRA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ASF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q10682 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 137 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ASF VAL A 1 ? UNP Q10682 MET 1 'SEE REMARK 999' 1 1 1 2ASF MSE A 3 ? UNP Q10682 MET 3 'MODIFIED RESIDUE' 3 2 1 2ASF MSE A 25 ? UNP Q10682 MET 25 'MODIFIED RESIDUE' 25 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ASF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.0 _exptl_crystal.density_percent_sol 38.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '20% PEG 4000, 0.2M sodium citrate, 3% dioxane, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-07-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979571 1.0 2 1.019691 1.0 3 1.115869 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.979571, 1.019691, 1.115869' # _reflns.entry_id 2ASF _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 38.24 _reflns.number_all 16681 _reflns.number_obs 16283 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 87.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2ASF _refine.ls_number_reflns_obs 15503 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.24 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 97.58 _refine.ls_R_factor_obs 0.17992 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17866 _refine.ls_R_factor_R_free 0.20397 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 792 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 14.561 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.092 _refine.overall_SU_ML 0.057 _refine.overall_SU_B 1.615 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 963 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 1165 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 38.24 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 1008 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.271 1.990 ? 1373 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.793 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.585 22.128 ? 47 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 9.910 15.000 ? 161 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.189 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 160 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 779 'X-RAY DIFFRACTION' ? r_nbd_refined 0.209 0.200 ? 442 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 703 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.154 0.200 ? 123 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.095 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.162 0.200 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.128 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.112 0.200 ? 2 'X-RAY DIFFRACTION' ? r_mcbond_it 0.704 1.500 ? 624 'X-RAY DIFFRACTION' ? r_mcangle_it 1.360 2.000 ? 1005 'X-RAY DIFFRACTION' ? r_scbond_it 2.345 3.000 ? 391 'X-RAY DIFFRACTION' ? r_scangle_it 3.396 4.500 ? 368 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.599 _refine_ls_shell.d_res_low 1.641 _refine_ls_shell.number_reflns_R_work 995 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 87.07 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ASF _struct.title 'Crystal structure of the conserved hypothetical protein Rv2074 from Mycobacterium tuberculosis 1.6 A' _struct.pdbx_descriptor 'Hypothetical protein Rv2074' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ASF _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'Rv2074, H37Rv, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The biological functional molecule is a dimer. The crystal asymmetric unit contains a monomer. The dimer can be generated by the symmetry operation y, x, -z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? LEU A 18 ? SER A 11 LEU A 18 1 ? 8 HELX_P HELX_P2 2 SER A 59 ? GLY A 69 ? SER A 59 GLY A 69 1 ? 11 HELX_P HELX_P3 3 ASP A 93 ? TYR A 108 ? ASP A 93 TYR A 108 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 24 C ? ? ? 1_555 A MSE 25 N ? ? A ALA 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.319 ? covale2 covale ? ? A MSE 25 C ? ? ? 1_555 A LEU 26 N ? ? A MSE 25 A LEU 26 1_555 ? ? ? ? ? ? ? 1.329 ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 D CIT . O3 A ? A NA 1157 A CIT 2001 1_555 ? ? ? ? ? ? ? 2.438 ? metalc2 metalc ? ? B NA . NA ? ? ? 1_555 C CIT . O1 ? ? A NA 1157 A CIT 1001 1_555 ? ? ? ? ? ? ? 2.304 ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 C CIT . O7 ? ? A NA 1157 A CIT 1001 1_555 ? ? ? ? ? ? ? 2.326 ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 1157 A HOH 2128 8_666 ? ? ? ? ? ? ? 2.264 ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 1157 A HOH 2057 8_666 ? ? ? ? ? ? ? 2.348 ? metalc6 metalc ? ? B NA . NA ? ? ? 1_555 D CIT . O3 B ? A NA 1157 A CIT 2001 1_555 ? ? ? ? ? ? ? 2.638 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PRO A 35 ? VAL A 40 ? PRO A 35 VAL A 40 A 2 ALA A 24 ? LEU A 29 ? ALA A 24 LEU A 29 A 3 LEU A 70 ? ASP A 77 ? LEU A 70 ASP A 77 A 4 ARG A 80 ? ASN A 91 ? ARG A 80 ASN A 91 A 5 ARG A 117 ? GLY A 129 ? ARG A 117 GLY A 129 A 6 ILE A 50 ? THR A 56 ? ILE A 50 THR A 56 A 7 THR A 43 ? ASP A 45 ? THR A 43 ASP A 45 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 36 ? O HIS A 36 N THR A 28 ? N THR A 28 A 2 3 N THR A 27 ? N THR A 27 O VAL A 72 ? O VAL A 72 A 3 4 N LEU A 73 ? N LEU A 73 O LEU A 84 ? O LEU A 84 A 4 5 N ASN A 91 ? N ASN A 91 O VAL A 119 ? O VAL A 119 A 5 6 O ILE A 120 ? O ILE A 120 N VAL A 53 ? N VAL A 53 A 6 7 O ILE A 50 ? O ILE A 50 N ASP A 45 ? N ASP A 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 1157' AC2 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE CIT A 1001' AC3 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE CIT A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CIT C . ? CIT A 1001 . ? 1_555 ? 2 AC1 5 CIT D . ? CIT A 2001 . ? 1_555 ? 3 AC1 5 HOH E . ? HOH A 2057 . ? 8_666 ? 4 AC1 5 HOH E . ? HOH A 2113 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 2128 . ? 8_666 ? 6 AC2 14 THR A 55 ? THR A 55 . ? 1_555 ? 7 AC2 14 THR A 56 ? THR A 56 . ? 1_555 ? 8 AC2 14 SER A 59 ? SER A 59 . ? 1_555 ? 9 AC2 14 LYS A 61 ? LYS A 61 . ? 1_555 ? 10 AC2 14 ARG A 112 ? ARG A 112 . ? 8_666 ? 11 AC2 14 ASN A 114 ? ASN A 114 . ? 8_666 ? 12 AC2 14 ARG A 116 ? ARG A 116 . ? 8_666 ? 13 AC2 14 NA B . ? NA A 1157 . ? 1_555 ? 14 AC2 14 CIT D . ? CIT A 2001 . ? 1_555 ? 15 AC2 14 HOH E . ? HOH A 2005 . ? 1_555 ? 16 AC2 14 HOH E . ? HOH A 2021 . ? 8_666 ? 17 AC2 14 HOH E . ? HOH A 2021 . ? 1_555 ? 18 AC2 14 HOH E . ? HOH A 2062 . ? 1_555 ? 19 AC2 14 HOH E . ? HOH A 2113 . ? 1_555 ? 20 AC3 15 SER A 59 ? SER A 59 . ? 1_555 ? 21 AC3 15 GLN A 60 ? GLN A 60 . ? 1_555 ? 22 AC3 15 LYS A 61 ? LYS A 61 . ? 1_555 ? 23 AC3 15 TRP A 81 ? TRP A 81 . ? 8_665 ? 24 AC3 15 PRO A 115 ? PRO A 115 . ? 8_666 ? 25 AC3 15 ARG A 116 ? ARG A 116 . ? 8_666 ? 26 AC3 15 CIT C . ? CIT A 1001 . ? 1_555 ? 27 AC3 15 NA B . ? NA A 1157 . ? 1_555 ? 28 AC3 15 HOH E . ? HOH A 2008 . ? 1_555 ? 29 AC3 15 HOH E . ? HOH A 2053 . ? 8_666 ? 30 AC3 15 HOH E . ? HOH A 2081 . ? 8_666 ? 31 AC3 15 HOH E . ? HOH A 2100 . ? 8_665 ? 32 AC3 15 HOH E . ? HOH A 2113 . ? 1_555 ? 33 AC3 15 HOH E . ? HOH A 2122 . ? 8_665 ? 34 AC3 15 HOH E . ? HOH A 2144 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ASF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ASF _atom_sites.fract_transf_matrix[1][1] 0.013625 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022324 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 MSE 3 3 ? ? ? A . n A 1 4 VAL 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 THR 7 7 ? ? ? A . n A 1 8 THR 8 8 ? ? ? A . n A 1 9 ARG 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 MSE 25 25 25 MSE MSE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 TRP 81 81 81 TRP TRP A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ARG 136 136 ? ? ? A . n A 1 137 ALA 137 137 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'TB Structural Genomics Consortium' _pdbx_SG_project.initial_of_center TBSGC # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 25 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 25 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3220 ? 1 MORE -26 ? 1 'SSA (A^2)' 12390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 73.3950000000 -1.0000000000 0.0000000000 0.0000000000 73.3950000000 0.0000000000 0.0000000000 -1.0000000000 22.3970000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2021 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3 A D CIT . ? A CIT 2001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O1 ? C CIT . ? A CIT 1001 ? 1_555 142.9 ? 2 O3 A D CIT . ? A CIT 2001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O7 ? C CIT . ? A CIT 1001 ? 1_555 78.5 ? 3 O1 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O7 ? C CIT . ? A CIT 1001 ? 1_555 82.3 ? 4 O3 A D CIT . ? A CIT 2001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2128 ? 8_666 120.7 ? 5 O1 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2128 ? 8_666 96.1 ? 6 O7 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2128 ? 8_666 113.2 ? 7 O3 A D CIT . ? A CIT 2001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2057 ? 8_666 96.8 ? 8 O1 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2057 ? 8_666 94.3 ? 9 O7 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2057 ? 8_666 166.0 ? 10 O ? E HOH . ? A HOH 2128 ? 8_666 NA ? B NA . ? A NA 1157 ? 1_555 O ? E HOH . ? A HOH 2057 ? 8_666 80.6 ? 11 O3 A D CIT . ? A CIT 2001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O3 B D CIT . ? A CIT 2001 ? 1_555 7.1 ? 12 O1 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O3 B D CIT . ? A CIT 2001 ? 1_555 147.7 ? 13 O7 ? C CIT . ? A CIT 1001 ? 1_555 NA ? B NA . ? A NA 1157 ? 1_555 O3 B D CIT . ? A CIT 2001 ? 1_555 85.3 ? 14 O ? E HOH . ? A HOH 2128 ? 8_666 NA ? B NA . ? A NA 1157 ? 1_555 O3 B D CIT . ? A CIT 2001 ? 1_555 116.2 ? 15 O ? E HOH . ? A HOH 2057 ? 8_666 NA ? B NA . ? A NA 1157 ? 1_555 O3 B D CIT . ? A CIT 2001 ? 1_555 90.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 Blu-Ice 'data collection' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 25 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 25 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.366 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.584 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 108 ? ? -113.99 -99.63 2 1 ASN A 114 ? ? -162.73 98.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 1 ? A VAL 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A MSE 3 ? A MSE 3 4 1 Y 1 A VAL 4 ? A VAL 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A THR 7 ? A THR 7 8 1 Y 1 A THR 8 ? A THR 8 9 1 Y 1 A ARG 9 ? A ARG 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A ARG 136 ? A ARG 136 12 1 Y 1 A ALA 137 ? A ALA 137 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CITRIC ACID' CIT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 1157 157 NA NA A . C 3 CIT 1 1001 1 CIT CIT A . D 3 CIT 1 2001 1 CIT CIT A . E 4 HOH 1 2002 1 HOH HOH A . E 4 HOH 2 2003 2 HOH HOH A . E 4 HOH 3 2004 3 HOH HOH A . E 4 HOH 4 2005 4 HOH HOH A . E 4 HOH 5 2006 5 HOH HOH A . E 4 HOH 6 2007 6 HOH HOH A . E 4 HOH 7 2008 7 HOH HOH A . E 4 HOH 8 2009 8 HOH HOH A . E 4 HOH 9 2010 9 HOH HOH A . E 4 HOH 10 2011 10 HOH HOH A . E 4 HOH 11 2012 11 HOH HOH A . E 4 HOH 12 2013 12 HOH HOH A . E 4 HOH 13 2014 13 HOH HOH A . E 4 HOH 14 2015 14 HOH HOH A . E 4 HOH 15 2016 15 HOH HOH A . E 4 HOH 16 2017 16 HOH HOH A . E 4 HOH 17 2018 17 HOH HOH A . E 4 HOH 18 2019 18 HOH HOH A . E 4 HOH 19 2020 19 HOH HOH A . E 4 HOH 20 2021 20 HOH HOH A . E 4 HOH 21 2022 21 HOH HOH A . E 4 HOH 22 2023 22 HOH HOH A . E 4 HOH 23 2024 23 HOH HOH A . E 4 HOH 24 2025 24 HOH HOH A . E 4 HOH 25 2026 25 HOH HOH A . E 4 HOH 26 2027 26 HOH HOH A . E 4 HOH 27 2028 27 HOH HOH A . E 4 HOH 28 2029 28 HOH HOH A . E 4 HOH 29 2030 29 HOH HOH A . E 4 HOH 30 2031 30 HOH HOH A . E 4 HOH 31 2032 31 HOH HOH A . E 4 HOH 32 2033 32 HOH HOH A . E 4 HOH 33 2034 33 HOH HOH A . E 4 HOH 34 2035 34 HOH HOH A . E 4 HOH 35 2036 35 HOH HOH A . E 4 HOH 36 2037 36 HOH HOH A . E 4 HOH 37 2038 37 HOH HOH A . E 4 HOH 38 2039 38 HOH HOH A . E 4 HOH 39 2040 39 HOH HOH A . E 4 HOH 40 2041 40 HOH HOH A . E 4 HOH 41 2042 41 HOH HOH A . E 4 HOH 42 2043 42 HOH HOH A . E 4 HOH 43 2044 43 HOH HOH A . E 4 HOH 44 2045 44 HOH HOH A . E 4 HOH 45 2046 45 HOH HOH A . E 4 HOH 46 2047 46 HOH HOH A . E 4 HOH 47 2048 47 HOH HOH A . E 4 HOH 48 2049 48 HOH HOH A . E 4 HOH 49 2050 49 HOH HOH A . E 4 HOH 50 2051 50 HOH HOH A . E 4 HOH 51 2052 51 HOH HOH A . E 4 HOH 52 2053 52 HOH HOH A . E 4 HOH 53 2054 53 HOH HOH A . E 4 HOH 54 2055 54 HOH HOH A . E 4 HOH 55 2056 55 HOH HOH A . E 4 HOH 56 2057 56 HOH HOH A . E 4 HOH 57 2058 57 HOH HOH A . E 4 HOH 58 2059 58 HOH HOH A . E 4 HOH 59 2060 59 HOH HOH A . E 4 HOH 60 2061 60 HOH HOH A . E 4 HOH 61 2062 61 HOH HOH A . E 4 HOH 62 2063 62 HOH HOH A . E 4 HOH 63 2064 63 HOH HOH A . E 4 HOH 64 2065 64 HOH HOH A . E 4 HOH 65 2066 65 HOH HOH A . E 4 HOH 66 2067 66 HOH HOH A . E 4 HOH 67 2068 67 HOH HOH A . E 4 HOH 68 2069 68 HOH HOH A . E 4 HOH 69 2070 69 HOH HOH A . E 4 HOH 70 2071 70 HOH HOH A . E 4 HOH 71 2072 71 HOH HOH A . E 4 HOH 72 2073 72 HOH HOH A . E 4 HOH 73 2074 73 HOH HOH A . E 4 HOH 74 2075 74 HOH HOH A . E 4 HOH 75 2076 75 HOH HOH A . E 4 HOH 76 2077 76 HOH HOH A . E 4 HOH 77 2078 77 HOH HOH A . E 4 HOH 78 2079 78 HOH HOH A . E 4 HOH 79 2080 79 HOH HOH A . E 4 HOH 80 2081 80 HOH HOH A . E 4 HOH 81 2082 81 HOH HOH A . E 4 HOH 82 2083 82 HOH HOH A . E 4 HOH 83 2084 83 HOH HOH A . E 4 HOH 84 2085 84 HOH HOH A . E 4 HOH 85 2086 85 HOH HOH A . E 4 HOH 86 2087 86 HOH HOH A . E 4 HOH 87 2088 87 HOH HOH A . E 4 HOH 88 2089 88 HOH HOH A . E 4 HOH 89 2090 89 HOH HOH A . E 4 HOH 90 2091 90 HOH HOH A . E 4 HOH 91 2092 91 HOH HOH A . E 4 HOH 92 2093 92 HOH HOH A . E 4 HOH 93 2094 93 HOH HOH A . E 4 HOH 94 2095 94 HOH HOH A . E 4 HOH 95 2096 95 HOH HOH A . E 4 HOH 96 2097 96 HOH HOH A . E 4 HOH 97 2098 97 HOH HOH A . E 4 HOH 98 2099 98 HOH HOH A . E 4 HOH 99 2100 99 HOH HOH A . E 4 HOH 100 2101 100 HOH HOH A . E 4 HOH 101 2102 101 HOH HOH A . E 4 HOH 102 2103 102 HOH HOH A . E 4 HOH 103 2104 103 HOH HOH A . E 4 HOH 104 2105 104 HOH HOH A . E 4 HOH 105 2106 105 HOH HOH A . E 4 HOH 106 2107 106 HOH HOH A . E 4 HOH 107 2108 107 HOH HOH A . E 4 HOH 108 2109 108 HOH HOH A . E 4 HOH 109 2110 109 HOH HOH A . E 4 HOH 110 2111 110 HOH HOH A . E 4 HOH 111 2112 111 HOH HOH A . E 4 HOH 112 2113 112 HOH HOH A . E 4 HOH 113 2114 113 HOH HOH A . E 4 HOH 114 2115 114 HOH HOH A . E 4 HOH 115 2116 115 HOH HOH A . E 4 HOH 116 2117 116 HOH HOH A . E 4 HOH 117 2118 117 HOH HOH A . E 4 HOH 118 2119 118 HOH HOH A . E 4 HOH 119 2120 119 HOH HOH A . E 4 HOH 120 2121 120 HOH HOH A . E 4 HOH 121 2122 121 HOH HOH A . E 4 HOH 122 2123 122 HOH HOH A . E 4 HOH 123 2124 123 HOH HOH A . E 4 HOH 124 2125 124 HOH HOH A . E 4 HOH 125 2126 125 HOH HOH A . E 4 HOH 126 2127 126 HOH HOH A . E 4 HOH 127 2128 127 HOH HOH A . E 4 HOH 128 2129 128 HOH HOH A . E 4 HOH 129 2130 129 HOH HOH A . E 4 HOH 130 2131 130 HOH HOH A . E 4 HOH 131 2132 131 HOH HOH A . E 4 HOH 132 2133 132 HOH HOH A . E 4 HOH 133 2134 133 HOH HOH A . E 4 HOH 134 2135 134 HOH HOH A . E 4 HOH 135 2136 135 HOH HOH A . E 4 HOH 136 2137 136 HOH HOH A . E 4 HOH 137 2138 137 HOH HOH A . E 4 HOH 138 2139 138 HOH HOH A . E 4 HOH 139 2140 139 HOH HOH A . E 4 HOH 140 2141 140 HOH HOH A . E 4 HOH 141 2142 141 HOH HOH A . E 4 HOH 142 2143 142 HOH HOH A . E 4 HOH 143 2144 143 HOH HOH A . E 4 HOH 144 2145 144 HOH HOH A . E 4 HOH 145 2146 145 HOH HOH A . E 4 HOH 146 2147 146 HOH HOH A . E 4 HOH 147 2148 147 HOH HOH A . E 4 HOH 148 2149 148 HOH HOH A . E 4 HOH 149 2150 149 HOH HOH A . E 4 HOH 150 2151 150 HOH HOH A . E 4 HOH 151 2152 151 HOH HOH A . E 4 HOH 152 2153 152 HOH HOH A . E 4 HOH 153 2154 153 HOH HOH A . E 4 HOH 154 2155 154 HOH HOH A . E 4 HOH 155 2156 155 HOH HOH A . E 4 HOH 156 2157 156 HOH HOH A . E 4 HOH 157 2158 157 HOH HOH A . E 4 HOH 158 2159 158 HOH HOH A . E 4 HOH 159 2160 159 HOH HOH A . E 4 HOH 160 2161 160 HOH HOH A . E 4 HOH 161 2162 161 HOH HOH A . E 4 HOH 162 2163 162 HOH HOH A . E 4 HOH 163 2164 163 HOH HOH A . E 4 HOH 164 2165 164 HOH HOH A . E 4 HOH 165 2166 165 HOH HOH A . E 4 HOH 166 2167 166 HOH HOH A . E 4 HOH 167 2168 167 HOH HOH A . E 4 HOH 168 2169 168 HOH HOH A . E 4 HOH 169 2170 169 HOH HOH A . E 4 HOH 170 2171 170 HOH HOH A . E 4 HOH 171 2172 171 HOH HOH A . E 4 HOH 172 2173 172 HOH HOH A . E 4 HOH 173 2174 173 HOH HOH A . E 4 HOH 174 2175 174 HOH HOH A . E 4 HOH 175 2176 175 HOH HOH A . #