HEADER HYDROLASE 26-AUG-05 2ATX TITLE CRYSTAL STRUCTURE OF THE TC10 GPPNHP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GTP BINDING PROTEIN TC10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TC10 (0-193); COMPND 5 SYNONYM: RAS-RELATED GTP-BINDING PROTEIN TC10; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TC10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T KEYWDS TC10, GTPASE, P-LOOP, ALPHA-BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.HEMSATH,R.DVORSKY,D.FIEGEN,M.F.CARLIER,M.R.AHMADIAN REVDAT 8 03-APR-24 2ATX 1 REMARK REVDAT 7 13-MAR-24 2ATX 1 REMARK SEQADV LINK REVDAT 6 11-OCT-17 2ATX 1 REMARK REVDAT 5 13-JUL-11 2ATX 1 VERSN REVDAT 4 24-FEB-09 2ATX 1 VERSN REVDAT 3 17-JAN-06 2ATX 1 JRNL REVDAT 2 04-OCT-05 2ATX 1 DBREF REVDAT 1 13-SEP-05 2ATX 0 JRNL AUTH L.HEMSATH,R.DVORSKY,D.FIEGEN,M.F.CARLIER,M.R.AHMADIAN JRNL TITL AN ELECTROSTATIC STEERING MECHANISM OF CDC42 RECOGNITION BY JRNL TITL 2 WISKOTT-ALDRICH SYNDROME PROTEINS JRNL REF MOL.CELL V. 20 313 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 16246732 JRNL DOI 10.1016/J.MOLCEL.2005.08.036 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 58.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : -1.79000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.349 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2984 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2682 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4070 ; 1.755 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6276 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 7.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3258 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 598 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2925 ; 0.227 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1720 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.084 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1854 ; 0.649 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2990 ; 1.185 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 1.616 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 2.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 135 4 REMARK 3 1 B 10 B 135 4 REMARK 3 2 A 136 A 150 6 REMARK 3 2 B 136 B 150 6 REMARK 3 3 A 151 A 193 4 REMARK 3 3 B 151 B 193 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2538 ; 0.33 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 238 ; 1.00 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2538 ; 0.55 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 238 ; 3.75 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6710 8.8860 42.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.2915 REMARK 3 T33: 0.0664 T12: 0.0517 REMARK 3 T13: 0.1252 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 3.7993 L22: 7.0861 REMARK 3 L33: 2.1260 L12: -3.2995 REMARK 3 L13: -0.1300 L23: 0.1583 REMARK 3 S TENSOR REMARK 3 S11: -0.5598 S12: -0.3895 S13: -0.0686 REMARK 3 S21: 1.2848 S22: 0.5118 S23: 0.4718 REMARK 3 S31: -0.2448 S32: -0.1040 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0510 -20.3930 43.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.1524 T22: 0.2298 REMARK 3 T33: 0.0931 T12: -0.0715 REMARK 3 T13: -0.0578 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 2.4153 L22: 10.5547 REMARK 3 L33: 2.3422 L12: -1.1880 REMARK 3 L13: 0.2303 L23: 0.3675 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.1581 S13: -0.3340 REMARK 3 S21: 1.5614 S22: 0.2543 S23: -0.1246 REMARK 3 S31: 0.3155 S32: -0.0101 S33: -0.3568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ATX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 23.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 FOR SHELL : 5.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: TC10 GDP (UNPUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 3350, NACL, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 8 OG REMARK 470 VAL A 60 CB CG1 CG2 REMARK 470 PRO A 193 CG CD REMARK 470 SER B 8 OG REMARK 470 VAL B 60 CB CG1 CG2 REMARK 470 PRO B 193 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 PRO A 193 N - CA - CB ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP B 136 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 16.54 83.48 REMARK 500 GLU A 45 -133.25 -74.08 REMARK 500 VAL A 60 -86.68 -84.88 REMARK 500 GLN A 75 -163.32 -72.00 REMARK 500 GLU A 110 -47.12 -135.83 REMARK 500 LYS A 147 24.29 48.12 REMARK 500 GLN A 176 -1.85 72.51 REMARK 500 MET B 9 145.46 144.43 REMARK 500 GLU B 45 -119.34 -110.98 REMARK 500 VAL B 60 -80.67 -80.66 REMARK 500 ALA B 119 67.08 -163.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 31 OG1 REMARK 620 2 THR A 49 O 78.6 REMARK 620 3 GNP A 200 O2G 132.9 75.7 REMARK 620 4 GNP A 200 O2B 86.3 130.8 81.7 REMARK 620 5 HOH A 202 O 66.3 59.7 66.7 71.3 REMARK 620 6 HOH A 203 O 109.4 95.0 111.5 134.1 154.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 31 OG1 REMARK 620 2 THR B 49 O 73.7 REMARK 620 3 GNP B1200 O2G 164.9 91.6 REMARK 620 4 GNP B1200 O2B 98.0 168.7 96.1 REMARK 620 5 HOH B1202 O 83.4 79.9 90.7 91.6 REMARK 620 6 HOH B1203 O 89.9 89.9 93.6 98.0 169.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 1200 DBREF 2ATX A 2 193 UNP P17081 RHOQ_HUMAN 2 193 DBREF 2ATX B 2 193 UNP P17081 RHOQ_HUMAN 2 193 SEQADV 2ATX GLY A 0 UNP P17081 CLONING ARTIFACT SEQADV 2ATX SER A 1 UNP P17081 CLONING ARTIFACT SEQADV 2ATX GLY B 0 UNP P17081 CLONING ARTIFACT SEQADV 2ATX SER B 1 UNP P17081 CLONING ARTIFACT SEQRES 1 A 194 GLY SER PRO GLY ALA GLY ARG SER SER MET ALA HIS GLY SEQRES 2 A 194 PRO GLY ALA LEU MET LEU LYS CYS VAL VAL VAL GLY ASP SEQRES 3 A 194 GLY ALA VAL GLY LYS THR CYS LEU LEU MET SER TYR ALA SEQRES 4 A 194 ASN ASP ALA PHE PRO GLU GLU TYR VAL PRO THR VAL PHE SEQRES 5 A 194 ASP HIS TYR ALA VAL SER VAL THR VAL GLY GLY LYS GLN SEQRES 6 A 194 TYR LEU LEU GLY LEU TYR ASP THR ALA GLY GLN GLU ASP SEQRES 7 A 194 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO MET THR ASP SEQRES 8 A 194 VAL PHE LEU ILE CYS PHE SER VAL VAL ASN PRO ALA SER SEQRES 9 A 194 PHE GLN ASN VAL LYS GLU GLU TRP VAL PRO GLU LEU LYS SEQRES 10 A 194 GLU TYR ALA PRO ASN VAL PRO PHE LEU LEU ILE GLY THR SEQRES 11 A 194 GLN ILE ASP LEU ARG ASP ASP PRO LYS THR LEU ALA ARG SEQRES 12 A 194 LEU ASN ASP MET LYS GLU LYS PRO ILE CYS VAL GLU GLN SEQRES 13 A 194 GLY GLN LYS LEU ALA LYS GLU ILE GLY ALA CYS CYS TYR SEQRES 14 A 194 VAL GLU CYS SER ALA LEU THR GLN LYS GLY LEU LYS THR SEQRES 15 A 194 VAL PHE ASP GLU ALA ILE ILE ALA ILE LEU THR PRO SEQRES 1 B 194 GLY SER PRO GLY ALA GLY ARG SER SER MET ALA HIS GLY SEQRES 2 B 194 PRO GLY ALA LEU MET LEU LYS CYS VAL VAL VAL GLY ASP SEQRES 3 B 194 GLY ALA VAL GLY LYS THR CYS LEU LEU MET SER TYR ALA SEQRES 4 B 194 ASN ASP ALA PHE PRO GLU GLU TYR VAL PRO THR VAL PHE SEQRES 5 B 194 ASP HIS TYR ALA VAL SER VAL THR VAL GLY GLY LYS GLN SEQRES 6 B 194 TYR LEU LEU GLY LEU TYR ASP THR ALA GLY GLN GLU ASP SEQRES 7 B 194 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO MET THR ASP SEQRES 8 B 194 VAL PHE LEU ILE CYS PHE SER VAL VAL ASN PRO ALA SER SEQRES 9 B 194 PHE GLN ASN VAL LYS GLU GLU TRP VAL PRO GLU LEU LYS SEQRES 10 B 194 GLU TYR ALA PRO ASN VAL PRO PHE LEU LEU ILE GLY THR SEQRES 11 B 194 GLN ILE ASP LEU ARG ASP ASP PRO LYS THR LEU ALA ARG SEQRES 12 B 194 LEU ASN ASP MET LYS GLU LYS PRO ILE CYS VAL GLU GLN SEQRES 13 B 194 GLY GLN LYS LEU ALA LYS GLU ILE GLY ALA CYS CYS TYR SEQRES 14 B 194 VAL GLU CYS SER ALA LEU THR GLN LYS GLY LEU LYS THR SEQRES 15 B 194 VAL PHE ASP GLU ALA ILE ILE ALA ILE LEU THR PRO HET MG A 201 1 HET GNP A 200 32 HET MG B1201 1 HET GNP B1200 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 GNP 2(C10 H17 N6 O13 P3) FORMUL 7 HOH *13(H2 O) HELIX 1 1 GLY A 29 ASP A 40 1 12 HELIX 2 2 LEU A 81 TYR A 86 5 6 HELIX 3 3 ASN A 100 GLU A 110 1 11 HELIX 4 4 GLU A 110 ALA A 119 1 10 HELIX 5 5 ASP A 136 ASN A 144 1 9 HELIX 6 6 CYS A 152 GLY A 164 1 13 HELIX 7 7 GLY A 178 THR A 192 1 15 HELIX 8 8 GLY B 29 ASP B 40 1 12 HELIX 9 9 LEU B 81 TYR B 86 5 6 HELIX 10 10 ASN B 100 GLU B 110 1 11 HELIX 11 11 GLU B 110 ALA B 119 1 10 HELIX 12 12 GLN B 130 ASP B 135 5 6 HELIX 13 13 ASP B 136 ASN B 144 1 9 HELIX 14 14 ASP B 145 LYS B 147 5 3 HELIX 15 15 CYS B 152 ILE B 163 1 12 HELIX 16 16 GLY B 178 THR B 192 1 15 SHEET 1 A10 TYR A 168 GLU A 170 0 SHEET 2 A10 PHE A 124 THR A 129 1 N LEU A 126 O VAL A 169 SHEET 3 A10 VAL A 91 SER A 97 1 N ILE A 94 O LEU A 125 SHEET 4 A10 GLY A 14 GLY A 24 1 N VAL A 23 O LEU A 93 SHEET 5 A10 GLN A 64 TYR A 70 1 O GLY A 68 N LEU A 18 SHEET 6 A10 TYR A 54 THR A 59 -1 N TYR A 54 O LEU A 69 SHEET 7 A10 GLY B 14 GLY B 24 -1 O ALA B 15 N ALA A 55 SHEET 8 A10 VAL B 91 SER B 97 1 O CYS B 95 N VAL B 23 SHEET 9 A10 PHE B 124 THR B 129 1 O LEU B 125 N ILE B 94 SHEET 10 A10 TYR B 168 GLU B 170 1 O VAL B 169 N LEU B 126 SHEET 1 B10 TYR A 168 GLU A 170 0 SHEET 2 B10 PHE A 124 THR A 129 1 N LEU A 126 O VAL A 169 SHEET 3 B10 VAL A 91 SER A 97 1 N ILE A 94 O LEU A 125 SHEET 4 B10 GLY A 14 GLY A 24 1 N VAL A 23 O LEU A 93 SHEET 5 B10 TYR B 54 THR B 59 -1 O ALA B 55 N ALA A 15 SHEET 6 B10 GLN B 64 ASP B 71 -1 O LEU B 69 N TYR B 54 SHEET 7 B10 GLY B 14 GLY B 24 1 N LEU B 18 O GLY B 68 SHEET 8 B10 VAL B 91 SER B 97 1 O CYS B 95 N VAL B 23 SHEET 9 B10 PHE B 124 THR B 129 1 O LEU B 125 N ILE B 94 SHEET 10 B10 TYR B 168 GLU B 170 1 O VAL B 169 N LEU B 126 LINK OG1 THR A 31 MG MG A 201 1555 1555 2.19 LINK O THR A 49 MG MG A 201 1555 1555 2.37 LINK O2G GNP A 200 MG MG A 201 1555 1555 2.05 LINK O2B GNP A 200 MG MG A 201 1555 1555 2.18 LINK MG MG A 201 O HOH A 202 1555 1555 2.54 LINK MG MG A 201 O HOH A 203 1555 1555 2.13 LINK OG1 THR B 31 MG MG B1201 1555 1555 2.14 LINK O THR B 49 MG MG B1201 1555 1555 2.24 LINK O2G GNP B1200 MG MG B1201 1555 1555 1.96 LINK O2B GNP B1200 MG MG B1201 1555 1555 1.88 LINK MG MG B1201 O HOH B1202 1555 1555 2.02 LINK MG MG B1201 O HOH B1203 1555 1555 2.16 SITE 1 AC1 6 THR A 31 THR A 49 ASP A 71 GNP A 200 SITE 2 AC1 6 HOH A 202 HOH A 203 SITE 1 AC2 5 THR B 31 THR B 49 GNP B1200 HOH B1202 SITE 2 AC2 5 HOH B1203 SITE 1 AC3 20 ASP A 25 GLY A 26 ALA A 27 VAL A 28 SITE 2 AC3 20 GLY A 29 LYS A 30 THR A 31 CYS A 32 SITE 3 AC3 20 PHE A 42 THR A 49 GLY A 74 GLN A 130 SITE 4 AC3 20 ASP A 132 LEU A 133 SER A 172 ALA A 173 SITE 5 AC3 20 LEU A 174 MG A 201 HOH A 202 HOH A 206 SITE 1 AC4 19 GLY B 26 ALA B 27 VAL B 28 GLY B 29 SITE 2 AC4 19 LYS B 30 THR B 31 CYS B 32 PHE B 42 SITE 3 AC4 19 THR B 49 GLY B 74 GLN B 130 ASP B 132 SITE 4 AC4 19 LEU B 133 SER B 172 ALA B 173 LEU B 174 SITE 5 AC4 19 MG B1201 HOH B1202 HOH B1203 CRYST1 43.690 82.200 114.310 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008748 0.00000