HEADER ISOMERASE/STRUCTURAL PROTEIN 29-AUG-05 2AUS TITLE CRYSTAL STRUCTURE OF THE ARCHAEAL BOX H/ACA SRNP NOP10-CBF5 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOURIDINE SYNTHASE; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: PROBABLE TRNA PSEUDOURIDINE SYNTHASE B, CBF5, TRNA COMPND 5 PSEUDOURIDINE 55 SYNTHASE, PSI55 SYNTHASE, TRNA-URIDINE ISOMERASE, COMPND 6 TRNA PSEUDOURIDYLATE SYNTHASE; COMPND 7 EC: 5.4.99.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RIBOSOME BIOGENESIS PROTEIN NOP10; COMPND 11 CHAIN: D, B; COMPND 12 SYNONYM: NOP10; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 10 ORGANISM_TAXID: 29292; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS ISOMERASE, STRUCTURAL PROTEIN, ISOMERASE-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHARRON,X.MANIVAL,B.CHARPENTIER,J.-B.FOURMANN,F.GODARD,C.BRANLANT REVDAT 5 13-MAR-24 2AUS 1 REMARK LINK REVDAT 4 11-OCT-17 2AUS 1 REMARK REVDAT 3 13-JUL-11 2AUS 1 VERSN REVDAT 2 24-FEB-09 2AUS 1 VERSN REVDAT 1 11-JUL-06 2AUS 0 JRNL AUTH X.MANIVAL,C.CHARRON,J.B.FOURMANN,F.GODARD,B.CHARPENTIER, JRNL AUTH 2 C.BRANLANT JRNL TITL CRYSTAL STRUCTURE DETERMINATION AND SITE-DIRECTED JRNL TITL 2 MUTAGENESIS OF THE PYROCOCCUS ABYSSI ACBF5-ANOP10 COMPLEX JRNL TITL 3 REVEAL CRUCIAL ROLES OF THE C-TERMINAL DOMAINS OF BOTH JRNL TITL 4 PROTEINS IN H/ACA SRNP ACTIVITY JRNL REF NUCLEIC ACIDS RES. V. 34 826 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16456033 JRNL DOI 10.1093/NAR/GKJ482 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 65534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3334 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.491 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-04; 14-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-4; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686; 0.9777 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM PHOSPHATE, SODIUM ACETATE, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.21500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.21500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 HETERODIMER IN THE ASYMMETRIC UNIT BY THE OPERATION: -X, -Y, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 136.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.43000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 136.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ARG C 3 REMARK 465 ASP C 4 REMARK 465 GLU C 5 REMARK 465 VAL C 6 REMARK 465 ARG C 7 REMARK 465 ARG C 8 REMARK 465 ILE C 9 REMARK 465 LEU C 10 REMARK 465 PRO C 11 REMARK 465 ARG C 139 REMARK 465 PRO C 140 REMARK 465 PRO C 141 REMARK 465 LEU C 142 REMARK 465 ARG C 143 REMARK 465 SER C 144 REMARK 465 ALA C 145 REMARK 465 VAL C 146 REMARK 465 LYS C 147 REMARK 465 ARG C 148 REMARK 465 ARG C 149 REMARK 465 LEU C 150 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 PHE D 3 REMARK 465 ARG D 57 REMARK 465 LYS D 58 REMARK 465 GLU D 59 REMARK 465 LYS D 60 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 139 REMARK 465 PRO A 140 REMARK 465 PRO A 141 REMARK 465 LEU A 142 REMARK 465 ARG A 143 REMARK 465 SER A 144 REMARK 465 ALA A 145 REMARK 465 VAL A 146 REMARK 465 LYS A 147 REMARK 465 ARG A 148 REMARK 465 ARG A 149 REMARK 465 LEU A 150 REMARK 465 ARG A 151 REMARK 465 THR A 152 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PHE B 3 REMARK 465 ARG B 57 REMARK 465 LYS B 58 REMARK 465 GLU B 59 REMARK 465 LYS B 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 94 -115.43 39.90 REMARK 500 LYS C 283 133.02 -39.92 REMARK 500 LYS D 10 -92.43 -81.26 REMARK 500 ASP A 13 43.08 -79.49 REMARK 500 GLU A 94 -114.69 43.02 REMARK 500 ASP A 211 -157.87 -127.73 REMARK 500 LYS B 10 -78.68 -75.70 REMARK 500 VAL B 22 -78.47 -72.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1071 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 8 SG REMARK 620 2 CYS D 11 SG 132.9 REMARK 620 3 CYS D 20 SG 93.0 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1070 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 8 SG REMARK 620 2 CYS B 11 SG 108.1 REMARK 620 3 CYS B 20 SG 91.4 118.4 REMARK 620 4 CYS B 23 SG 81.5 132.2 107.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1071 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1006 DBREF 2AUS C 1 334 UNP Q9V1A5 TRUB_PYRAB 1 334 DBREF 2AUS D 1 60 UNP Q9V0E3 NOP10_PYRAB 1 60 DBREF 2AUS A 1 334 UNP Q9V1A5 TRUB_PYRAB 1 334 DBREF 2AUS B 1 60 UNP Q9V0E3 NOP10_PYRAB 1 60 SEQRES 1 C 334 MET ALA ARG ASP GLU VAL ARG ARG ILE LEU PRO ALA ASP SEQRES 2 C 334 ILE LYS ARG GLU VAL ILE VAL LYS ASP ASP LYS ALA GLU SEQRES 3 C 334 THR ASN PRO LYS TRP GLY PHE PRO PRO ASP LYS ARG PRO SEQRES 4 C 334 ILE GLU LEU HIS ILE GLN TYR GLY VAL ILE ASN LEU ASP SEQRES 5 C 334 LYS PRO PRO GLY PRO THR SER HIS GLU VAL VAL ALA TRP SEQRES 6 C 334 ILE LYS ARG ILE LEU ASN LEU GLU LYS ALA GLY HIS GLY SEQRES 7 C 334 GLY THR LEU ASP PRO LYS VAL SER GLY VAL LEU PRO VAL SEQRES 8 C 334 ALA LEU GLU ARG ALA THR ARG VAL VAL GLN ALA LEU LEU SEQRES 9 C 334 PRO ALA GLY LYS GLU TYR VAL ALA LEU MET HIS LEU HIS SEQRES 10 C 334 GLY ASP VAL PRO GLU ASP LYS ILE ARG ALA VAL MET LYS SEQRES 11 C 334 GLU PHE GLU GLY GLU ILE ILE GLN ARG PRO PRO LEU ARG SEQRES 12 C 334 SER ALA VAL LYS ARG ARG LEU ARG THR ARG LYS VAL TYR SEQRES 13 C 334 TYR ILE GLU ILE LEU GLU ILE ASP GLY ARG ASP VAL LEU SEQRES 14 C 334 PHE ARG VAL GLY VAL GLU ALA GLY THR TYR ILE ARG SER SEQRES 15 C 334 LEU ILE HIS HIS ILE GLY LEU ALA LEU GLY VAL GLY ALA SEQRES 16 C 334 HIS MET ALA GLU LEU ARG ARG THR ARG SER GLY PRO PHE SEQRES 17 C 334 LYS GLU ASP GLU THR LEU VAL THR LEU HIS ASP LEU VAL SEQRES 18 C 334 ASP TYR TYR HIS PHE TRP LYS GLU ASP GLY ILE GLU GLU SEQRES 19 C 334 TYR ILE ARG LYS ALA ILE GLN PRO MET GLU LYS ALA VAL SEQRES 20 C 334 GLU HIS LEU PRO LYS ILE TRP ILE LYS ASP SER ALA VAL SEQRES 21 C 334 ALA ALA VAL ALA HIS GLY ALA ASN LEU THR VAL PRO GLY SEQRES 22 C 334 ILE VAL LYS LEU ASN ALA GLY ILE LYS LYS GLY ASP LEU SEQRES 23 C 334 VAL ALA ILE MET THR LEU LYS ASP GLU LEU VAL ALA LEU SEQRES 24 C 334 GLY LYS ALA MET MET SER THR GLN GLU MET ILE GLU ARG SEQRES 25 C 334 SER LYS GLY ILE ALA VAL ASP VAL GLU LYS VAL PHE MET SEQRES 26 C 334 PRO ARG ASP TRP TYR PRO LYS LEU TRP SEQRES 1 D 60 MET ARG PHE ARG ILE ARG LYS CYS PRO LYS CYS GLY ARG SEQRES 2 D 60 TYR THR LEU LYS GLU THR CYS PRO VAL CYS GLY GLU LYS SEQRES 3 D 60 THR LYS VAL ALA HIS PRO PRO ARG PHE SER PRO GLU ASP SEQRES 4 D 60 PRO TYR GLY GLU TYR ARG ARG ARG LEU LYS ARG GLU LEU SEQRES 5 D 60 LEU GLY ILE GLY ARG LYS GLU LYS SEQRES 1 A 334 MET ALA ARG ASP GLU VAL ARG ARG ILE LEU PRO ALA ASP SEQRES 2 A 334 ILE LYS ARG GLU VAL ILE VAL LYS ASP ASP LYS ALA GLU SEQRES 3 A 334 THR ASN PRO LYS TRP GLY PHE PRO PRO ASP LYS ARG PRO SEQRES 4 A 334 ILE GLU LEU HIS ILE GLN TYR GLY VAL ILE ASN LEU ASP SEQRES 5 A 334 LYS PRO PRO GLY PRO THR SER HIS GLU VAL VAL ALA TRP SEQRES 6 A 334 ILE LYS ARG ILE LEU ASN LEU GLU LYS ALA GLY HIS GLY SEQRES 7 A 334 GLY THR LEU ASP PRO LYS VAL SER GLY VAL LEU PRO VAL SEQRES 8 A 334 ALA LEU GLU ARG ALA THR ARG VAL VAL GLN ALA LEU LEU SEQRES 9 A 334 PRO ALA GLY LYS GLU TYR VAL ALA LEU MET HIS LEU HIS SEQRES 10 A 334 GLY ASP VAL PRO GLU ASP LYS ILE ARG ALA VAL MET LYS SEQRES 11 A 334 GLU PHE GLU GLY GLU ILE ILE GLN ARG PRO PRO LEU ARG SEQRES 12 A 334 SER ALA VAL LYS ARG ARG LEU ARG THR ARG LYS VAL TYR SEQRES 13 A 334 TYR ILE GLU ILE LEU GLU ILE ASP GLY ARG ASP VAL LEU SEQRES 14 A 334 PHE ARG VAL GLY VAL GLU ALA GLY THR TYR ILE ARG SER SEQRES 15 A 334 LEU ILE HIS HIS ILE GLY LEU ALA LEU GLY VAL GLY ALA SEQRES 16 A 334 HIS MET ALA GLU LEU ARG ARG THR ARG SER GLY PRO PHE SEQRES 17 A 334 LYS GLU ASP GLU THR LEU VAL THR LEU HIS ASP LEU VAL SEQRES 18 A 334 ASP TYR TYR HIS PHE TRP LYS GLU ASP GLY ILE GLU GLU SEQRES 19 A 334 TYR ILE ARG LYS ALA ILE GLN PRO MET GLU LYS ALA VAL SEQRES 20 A 334 GLU HIS LEU PRO LYS ILE TRP ILE LYS ASP SER ALA VAL SEQRES 21 A 334 ALA ALA VAL ALA HIS GLY ALA ASN LEU THR VAL PRO GLY SEQRES 22 A 334 ILE VAL LYS LEU ASN ALA GLY ILE LYS LYS GLY ASP LEU SEQRES 23 A 334 VAL ALA ILE MET THR LEU LYS ASP GLU LEU VAL ALA LEU SEQRES 24 A 334 GLY LYS ALA MET MET SER THR GLN GLU MET ILE GLU ARG SEQRES 25 A 334 SER LYS GLY ILE ALA VAL ASP VAL GLU LYS VAL PHE MET SEQRES 26 A 334 PRO ARG ASP TRP TYR PRO LYS LEU TRP SEQRES 1 B 60 MET ARG PHE ARG ILE ARG LYS CYS PRO LYS CYS GLY ARG SEQRES 2 B 60 TYR THR LEU LYS GLU THR CYS PRO VAL CYS GLY GLU LYS SEQRES 3 B 60 THR LYS VAL ALA HIS PRO PRO ARG PHE SER PRO GLU ASP SEQRES 4 B 60 PRO TYR GLY GLU TYR ARG ARG ARG LEU LYS ARG GLU LEU SEQRES 5 B 60 LEU GLY ILE GLY ARG LYS GLU LYS HET PO4 C1004 5 HET ZN D1071 1 HET PO4 D1001 5 HET PO4 A1003 5 HET ZN B1070 1 HET PO4 B1002 5 HET PO4 B1006 5 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION FORMUL 5 PO4 5(O4 P 3-) FORMUL 6 ZN 2(ZN 2+) FORMUL 12 HOH *250(H2 O) HELIX 1 1 PRO C 34 ARG C 38 5 5 HELIX 2 2 PRO C 39 TYR C 46 1 8 HELIX 3 3 THR C 58 LEU C 70 1 13 HELIX 4 4 ARG C 95 LEU C 104 5 10 HELIX 5 5 PRO C 121 PHE C 132 1 12 HELIX 6 6 TYR C 179 GLY C 192 1 14 HELIX 7 7 THR C 216 GLU C 229 1 14 HELIX 8 8 GLU C 233 ILE C 240 1 8 HELIX 9 9 GLU C 244 GLU C 248 5 5 HELIX 10 10 LYS C 256 HIS C 265 1 10 HELIX 11 11 SER C 305 ARG C 312 1 8 HELIX 12 12 TYR D 41 LEU D 53 1 13 HELIX 13 13 PRO A 34 ARG A 38 5 5 HELIX 14 14 PRO A 39 TYR A 46 1 8 HELIX 15 15 THR A 58 LEU A 70 1 13 HELIX 16 16 ARG A 95 LEU A 104 5 10 HELIX 17 17 PRO A 121 PHE A 132 1 12 HELIX 18 18 TYR A 179 LEU A 191 1 13 HELIX 19 19 THR A 216 GLU A 229 1 14 HELIX 20 20 GLU A 233 ILE A 240 1 8 HELIX 21 21 GLU A 244 GLU A 248 5 5 HELIX 22 22 LYS A 256 HIS A 265 1 10 HELIX 23 23 SER A 305 ARG A 312 1 8 HELIX 24 24 TYR B 41 GLY B 54 1 14 SHEET 1 A14 LEU C 269 THR C 270 0 SHEET 2 A14 ILE C 316 VAL C 323 -1 N ALA C 317 O LEU C 269 SHEET 3 A14 LEU C 296 ALA C 302 -1 N LEU C 299 O LYS C 322 SHEET 4 A14 LEU C 286 THR C 291 -1 N VAL C 287 O GLY C 300 SHEET 5 A14 LYS C 252 ILE C 255 1 O ILE C 253 N MET C 290 SHEET 6 A14 ILE C 274 ASN C 278 -1 N VAL C 275 O TRP C 254 SHEET 7 A14 VAL C 18 VAL C 20 -1 N ILE C 19 O LEU C 277 SHEET 8 A14 VAL A 18 VAL A 20 1 O VAL A 18 N VAL C 18 SHEET 9 A14 ILE A 274 ASN A 278 -1 O LEU A 277 N ILE A 19 SHEET 10 A14 LYS A 252 ILE A 255 -1 O LYS A 252 N ASN A 278 SHEET 11 A14 LEU A 286 MET A 290 1 O ALA A 288 N ILE A 253 SHEET 12 A14 LEU A 296 ALA A 302 -1 N VAL A 297 O ILE A 289 SHEET 13 A14 ILE A 316 VAL A 323 -1 N ASP A 319 O LYS A 301 SHEET 14 A14 LEU A 269 THR A 270 -1 O LEU A 269 N ALA A 317 SHEET 1 B14 GLY C 134 ILE C 137 0 SHEET 2 B14 THR C 152 ASP C 164 -1 N ARG C 153 O ILE C 136 SHEET 3 B14 ASP C 167 VAL C 174 -1 O ASP C 167 N ASP C 164 SHEET 4 B14 LYS C 108 LEU C 116 -1 O LYS C 108 N VAL C 174 SHEET 5 B14 ALA C 195 SER C 205 -1 O HIS C 196 N HIS C 115 SHEET 6 B14 PHE C 208 LYS C 209 -1 O PHE C 208 N SER C 205 SHEET 7 B14 ALA C 195 SER C 205 -1 N SER C 205 O PHE C 208 SHEET 8 B14 SER C 86 LEU C 93 1 O SER C 86 N ARG C 202 SHEET 9 B14 ALA C 75 HIS C 77 -1 O GLY C 76 N ALA C 92 SHEET 10 B14 SER C 86 LEU C 93 -1 N ALA C 92 O GLY C 76 SHEET 11 B14 GLY C 47 LYS C 53 -1 O GLY C 47 N LEU C 93 SHEET 12 B14 GLN C 241 PRO C 242 -1 N GLN C 241 O VAL C 48 SHEET 13 B14 GLY C 47 LYS C 53 -1 O VAL C 48 N GLN C 241 SHEET 14 B14 LEU C 214 VAL C 215 1 O VAL C 215 N ASP C 52 SHEET 1 C 3 TYR D 14 THR D 15 0 SHEET 2 C 3 ARG D 6 LYS D 7 -1 O ARG D 6 N THR D 15 SHEET 3 C 3 LYS D 28 VAL D 29 -1 O LYS D 28 N LYS D 7 SHEET 1 D14 GLY A 134 GLU A 135 0 SHEET 2 D14 LYS A 154 ASP A 164 -1 O VAL A 155 N GLY A 134 SHEET 3 D14 ASP A 167 GLU A 175 -1 O ASP A 167 N ASP A 164 SHEET 4 D14 GLY A 107 LEU A 116 -1 O LYS A 108 N VAL A 174 SHEET 5 D14 ALA A 195 SER A 205 -1 O HIS A 196 N HIS A 115 SHEET 6 D14 PHE A 208 LYS A 209 -1 O PHE A 208 N SER A 205 SHEET 7 D14 ALA A 195 SER A 205 -1 N SER A 205 O PHE A 208 SHEET 8 D14 SER A 86 LEU A 93 1 O SER A 86 N ARG A 202 SHEET 9 D14 ALA A 75 HIS A 77 -1 O GLY A 76 N ALA A 92 SHEET 10 D14 SER A 86 LEU A 93 -1 N ALA A 92 O GLY A 76 SHEET 11 D14 GLY A 47 LYS A 53 -1 O GLY A 47 N LEU A 93 SHEET 12 D14 GLN A 241 PRO A 242 -1 N GLN A 241 O VAL A 48 SHEET 13 D14 GLY A 47 LYS A 53 -1 O VAL A 48 N GLN A 241 SHEET 14 D14 LEU A 214 VAL A 215 1 O VAL A 215 N ASP A 52 SHEET 1 E 3 TYR B 14 THR B 15 0 SHEET 2 E 3 ARG B 6 LYS B 7 -1 N ARG B 6 O THR B 15 SHEET 3 E 3 LYS B 28 VAL B 29 -1 O LYS B 28 N LYS B 7 LINK SG CYS D 8 ZN ZN D1071 1555 1555 2.42 LINK SG CYS D 11 ZN ZN D1071 1555 1555 2.45 LINK SG CYS D 20 ZN ZN D1071 1555 1555 2.75 LINK SG CYS B 8 ZN ZN B1070 1555 1555 2.46 LINK SG CYS B 11 ZN ZN B1070 1555 1555 2.17 LINK SG CYS B 20 ZN ZN B1070 1555 1555 2.35 LINK SG CYS B 23 ZN ZN B1070 1555 1555 2.74 SITE 1 AC1 4 CYS B 8 CYS B 11 CYS B 20 CYS B 23 SITE 1 AC2 4 CYS D 8 CYS D 11 CYS D 20 CYS D 23 SITE 1 AC3 5 GLU C 229 GLU D 43 ARG D 46 ARG D 50 SITE 2 AC3 5 HOH D 140 SITE 1 AC4 6 HIS A 225 GLU A 229 GLU B 43 ARG B 46 SITE 2 AC4 6 ARG B 50 HOH B1083 SITE 1 AC5 8 GLY A 79 THR A 80 LYS A 108 ALA A 176 SITE 2 AC5 8 GLY A 177 ARG A 202 HOH A1022 HOH A1073 SITE 1 AC6 4 LYS C 108 TYR C 110 GLY C 177 ARG C 202 SITE 1 AC7 7 HIS A 218 ARG B 34 SER B 36 ASP B 39 SITE 2 AC7 7 PRO B 40 HOH B1072 HOH B1076 CRYST1 136.430 136.820 59.340 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016852 0.00000