HEADER HYDROLASE 29-AUG-05 2AV5 TITLE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS POP5, AN ARCHAEAL TITLE 2 RIBONUCLEASE P PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE P PROTEIN COMPONENT 2; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: RNASE P COMPONENT 2; COMPND 5 EC: 3.1.26.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: RNP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-33B KEYWDS RIBONUCLEASE P, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.C.WILSON,C.J.BOHLEN,M.P.FOSTER,C.E.BELL REVDAT 4 14-FEB-24 2AV5 1 REMARK REVDAT 3 20-OCT-21 2AV5 1 SEQADV REVDAT 2 24-FEB-09 2AV5 1 VERSN REVDAT 1 24-JAN-06 2AV5 0 JRNL AUTH R.C.WILSON,C.J.BOHLEN,M.P.FOSTER,C.E.BELL JRNL TITL STRUCTURE OF PFU POP5, AN ARCHAEAL RNASE P PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 873 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16418270 JRNL DOI 10.1073/PNAS.0508004103 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 315763.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 17989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2648 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 293 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.86 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.83 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.26 REMARK 3 BSOL : 16.27 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17989 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE, PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.50000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.75000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.25000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.75000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 134.25000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 LEU A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ARG B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 THR B 11 REMARK 465 LEU B 12 REMARK 465 ARG B 13 REMARK 465 ASP B 14 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLU C 3 REMARK 465 ARG C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 6 REMARK 465 THR C 7 REMARK 465 LEU C 8 REMARK 465 PRO C 9 REMARK 465 PRO C 10 REMARK 465 THR C 11 REMARK 465 LEU C 12 REMARK 465 ARG C 13 REMARK 465 ASP C 14 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLU D 3 REMARK 465 ARG D 4 REMARK 465 PRO D 5 REMARK 465 LYS D 6 REMARK 465 THR D 7 REMARK 465 LEU D 8 REMARK 465 PRO D 9 REMARK 465 PRO D 10 REMARK 465 THR D 11 REMARK 465 LEU D 12 REMARK 465 ARG D 13 REMARK 465 ASP D 14 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 GLU E 3 REMARK 465 ARG E 4 REMARK 465 PRO E 5 REMARK 465 LYS E 6 REMARK 465 THR E 7 REMARK 465 LEU E 8 REMARK 465 PRO E 9 REMARK 465 PRO E 10 REMARK 465 THR E 11 REMARK 465 LEU E 12 REMARK 465 ARG E 13 REMARK 465 ASP E 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 111 CD - NE - CZ ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 120 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 108 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 111 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 120 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG B 120 NE - CZ - NH1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG C 108 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 108 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 111 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG C 111 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG C 111 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 120 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG C 120 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG C 120 NE - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG D 108 CD - NE - CZ ANGL. DEV. = 21.8 DEGREES REMARK 500 ARG D 108 NE - CZ - NH1 ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG D 108 NE - CZ - NH2 ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG D 111 CD - NE - CZ ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG D 111 NE - CZ - NH1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG D 111 NE - CZ - NH2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG D 120 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG D 120 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG D 120 NE - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG E 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG E 108 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG E 111 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG E 111 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG E 111 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG E 120 CD - NE - CZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG E 120 NE - CZ - NH1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG E 120 NE - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 40.65 75.89 REMARK 500 ARG A 111 -83.73 -78.15 REMARK 500 LYS A 112 -4.43 -51.74 REMARK 500 PHE A 113 -50.48 -139.40 REMARK 500 SER A 115 -30.10 -37.41 REMARK 500 ASN B 91 40.46 75.80 REMARK 500 ARG B 111 -82.81 -78.74 REMARK 500 LYS B 112 -4.26 -52.13 REMARK 500 PHE B 113 -50.20 -139.43 REMARK 500 SER B 115 -30.42 -37.41 REMARK 500 ASN C 91 41.44 76.35 REMARK 500 ARG C 111 -82.74 -78.83 REMARK 500 LYS C 112 -4.22 -51.91 REMARK 500 PHE C 113 -50.26 -139.64 REMARK 500 SER C 115 -29.36 -38.09 REMARK 500 GLN C 116 30.01 -91.59 REMARK 500 ASN D 91 40.96 76.29 REMARK 500 ARG D 111 -83.88 -78.31 REMARK 500 LYS D 112 -4.31 -51.34 REMARK 500 PHE D 113 -50.46 -139.41 REMARK 500 SER D 115 -30.11 -37.86 REMARK 500 ASN E 91 40.95 76.44 REMARK 500 ARG E 111 -83.07 -78.22 REMARK 500 LYS E 112 -5.05 -51.51 REMARK 500 PHE E 113 -50.06 -138.68 REMARK 500 SER E 115 -30.46 -37.58 REMARK 500 GLN E 116 30.69 -91.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 2AV5 A 1 120 UNP Q8U151 RNP2_PYRFU 1 120 DBREF 2AV5 B 1 120 UNP Q8U151 RNP2_PYRFU 1 120 DBREF 2AV5 C 1 120 UNP Q8U151 RNP2_PYRFU 1 120 DBREF 2AV5 D 1 120 UNP Q8U151 RNP2_PYRFU 1 120 DBREF 2AV5 E 1 120 UNP Q8U151 RNP2_PYRFU 1 120 SEQADV 2AV5 SER A 72 UNP Q8U151 CYS 72 ENGINEERED MUTATION SEQADV 2AV5 SER B 72 UNP Q8U151 CYS 72 ENGINEERED MUTATION SEQADV 2AV5 SER C 72 UNP Q8U151 CYS 72 ENGINEERED MUTATION SEQADV 2AV5 SER D 72 UNP Q8U151 CYS 72 ENGINEERED MUTATION SEQADV 2AV5 SER E 72 UNP Q8U151 CYS 72 ENGINEERED MUTATION SEQRES 1 A 120 MET SER GLU ARG PRO LYS THR LEU PRO PRO THR LEU ARG SEQRES 2 A 120 ASP LYS LYS ARG TYR ILE ALA PHE LYS VAL ILE SER GLU SEQRES 3 A 120 ASN GLN PHE ASN LYS ASP GLU ILE LYS GLU ALA ILE TRP SEQRES 4 A 120 ASN ALA CYS LEU ARG THR LEU GLY GLU LEU GLY THR ALA SEQRES 5 A 120 LYS ALA LYS PRO TRP LEU ILE LYS PHE ASP GLU THR THR SEQRES 6 A 120 GLN THR GLY ILE ILE ARG SER ASP ARG ASN HIS VAL TYR SEQRES 7 A 120 ASP VAL ILE PHE SER LEU THR LEU VAL SER ASP ILE ASN SEQRES 8 A 120 GLY ASN LYS ALA ILE ILE LYS VAL LEU GLY VAL SER GLY SEQRES 9 A 120 THR ILE LYS ARG LEU LYS ARG LYS PHE LEU SER GLN PHE SEQRES 10 A 120 GLY TRP ARG SEQRES 1 B 120 MET SER GLU ARG PRO LYS THR LEU PRO PRO THR LEU ARG SEQRES 2 B 120 ASP LYS LYS ARG TYR ILE ALA PHE LYS VAL ILE SER GLU SEQRES 3 B 120 ASN GLN PHE ASN LYS ASP GLU ILE LYS GLU ALA ILE TRP SEQRES 4 B 120 ASN ALA CYS LEU ARG THR LEU GLY GLU LEU GLY THR ALA SEQRES 5 B 120 LYS ALA LYS PRO TRP LEU ILE LYS PHE ASP GLU THR THR SEQRES 6 B 120 GLN THR GLY ILE ILE ARG SER ASP ARG ASN HIS VAL TYR SEQRES 7 B 120 ASP VAL ILE PHE SER LEU THR LEU VAL SER ASP ILE ASN SEQRES 8 B 120 GLY ASN LYS ALA ILE ILE LYS VAL LEU GLY VAL SER GLY SEQRES 9 B 120 THR ILE LYS ARG LEU LYS ARG LYS PHE LEU SER GLN PHE SEQRES 10 B 120 GLY TRP ARG SEQRES 1 C 120 MET SER GLU ARG PRO LYS THR LEU PRO PRO THR LEU ARG SEQRES 2 C 120 ASP LYS LYS ARG TYR ILE ALA PHE LYS VAL ILE SER GLU SEQRES 3 C 120 ASN GLN PHE ASN LYS ASP GLU ILE LYS GLU ALA ILE TRP SEQRES 4 C 120 ASN ALA CYS LEU ARG THR LEU GLY GLU LEU GLY THR ALA SEQRES 5 C 120 LYS ALA LYS PRO TRP LEU ILE LYS PHE ASP GLU THR THR SEQRES 6 C 120 GLN THR GLY ILE ILE ARG SER ASP ARG ASN HIS VAL TYR SEQRES 7 C 120 ASP VAL ILE PHE SER LEU THR LEU VAL SER ASP ILE ASN SEQRES 8 C 120 GLY ASN LYS ALA ILE ILE LYS VAL LEU GLY VAL SER GLY SEQRES 9 C 120 THR ILE LYS ARG LEU LYS ARG LYS PHE LEU SER GLN PHE SEQRES 10 C 120 GLY TRP ARG SEQRES 1 D 120 MET SER GLU ARG PRO LYS THR LEU PRO PRO THR LEU ARG SEQRES 2 D 120 ASP LYS LYS ARG TYR ILE ALA PHE LYS VAL ILE SER GLU SEQRES 3 D 120 ASN GLN PHE ASN LYS ASP GLU ILE LYS GLU ALA ILE TRP SEQRES 4 D 120 ASN ALA CYS LEU ARG THR LEU GLY GLU LEU GLY THR ALA SEQRES 5 D 120 LYS ALA LYS PRO TRP LEU ILE LYS PHE ASP GLU THR THR SEQRES 6 D 120 GLN THR GLY ILE ILE ARG SER ASP ARG ASN HIS VAL TYR SEQRES 7 D 120 ASP VAL ILE PHE SER LEU THR LEU VAL SER ASP ILE ASN SEQRES 8 D 120 GLY ASN LYS ALA ILE ILE LYS VAL LEU GLY VAL SER GLY SEQRES 9 D 120 THR ILE LYS ARG LEU LYS ARG LYS PHE LEU SER GLN PHE SEQRES 10 D 120 GLY TRP ARG SEQRES 1 E 120 MET SER GLU ARG PRO LYS THR LEU PRO PRO THR LEU ARG SEQRES 2 E 120 ASP LYS LYS ARG TYR ILE ALA PHE LYS VAL ILE SER GLU SEQRES 3 E 120 ASN GLN PHE ASN LYS ASP GLU ILE LYS GLU ALA ILE TRP SEQRES 4 E 120 ASN ALA CYS LEU ARG THR LEU GLY GLU LEU GLY THR ALA SEQRES 5 E 120 LYS ALA LYS PRO TRP LEU ILE LYS PHE ASP GLU THR THR SEQRES 6 E 120 GLN THR GLY ILE ILE ARG SER ASP ARG ASN HIS VAL TYR SEQRES 7 E 120 ASP VAL ILE PHE SER LEU THR LEU VAL SER ASP ILE ASN SEQRES 8 E 120 GLY ASN LYS ALA ILE ILE LYS VAL LEU GLY VAL SER GLY SEQRES 9 E 120 THR ILE LYS ARG LEU LYS ARG LYS PHE LEU SER GLN PHE SEQRES 10 E 120 GLY TRP ARG HELIX 1 1 ASN A 30 LYS A 55 1 26 HELIX 2 2 HIS A 76 LEU A 86 1 11 HELIX 3 3 THR A 105 PHE A 113 1 9 HELIX 4 4 ASN B 30 LYS B 55 1 26 HELIX 5 5 HIS B 76 LEU B 86 1 11 HELIX 6 6 THR B 105 PHE B 113 1 9 HELIX 7 7 ASN C 30 LYS C 55 1 26 HELIX 8 8 HIS C 76 LEU C 86 1 11 HELIX 9 9 THR C 105 PHE C 113 1 9 HELIX 10 10 ASN D 30 LYS D 55 1 26 HELIX 11 11 HIS D 76 LEU D 86 1 11 HELIX 12 12 THR D 105 PHE D 113 1 9 HELIX 13 13 ASN E 30 LYS E 55 1 26 HELIX 14 14 HIS E 76 LEU E 86 1 11 HELIX 15 15 THR E 105 PHE E 113 1 9 SHEET 1 A 5 TRP A 57 ASP A 62 0 SHEET 2 A 5 THR A 67 ASP A 73 -1 O ARG A 71 N TRP A 57 SHEET 3 A 5 LYS A 16 SER A 25 -1 N ILE A 19 O ILE A 70 SHEET 4 A 5 ASN A 93 SER A 103 -1 O LEU A 100 N ALA A 20 SHEET 5 A 5 ASP A 89 ILE A 90 -1 N ILE A 90 O ASN A 93 SHEET 1 B 5 TRP B 57 ASP B 62 0 SHEET 2 B 5 THR B 67 ASP B 73 -1 O ARG B 71 N TRP B 57 SHEET 3 B 5 LYS B 16 SER B 25 -1 N ILE B 19 O ILE B 70 SHEET 4 B 5 ASN B 93 SER B 103 -1 O LEU B 100 N ALA B 20 SHEET 5 B 5 ASP B 89 ILE B 90 -1 N ILE B 90 O ASN B 93 SHEET 1 C 5 TRP C 57 ASP C 62 0 SHEET 2 C 5 THR C 67 ASP C 73 -1 O ARG C 71 N TRP C 57 SHEET 3 C 5 LYS C 16 SER C 25 -1 N ILE C 19 O ILE C 70 SHEET 4 C 5 ASN C 93 SER C 103 -1 O LEU C 100 N ALA C 20 SHEET 5 C 5 ASP C 89 ILE C 90 -1 N ILE C 90 O ASN C 93 SHEET 1 D 5 TRP D 57 ASP D 62 0 SHEET 2 D 5 THR D 67 ASP D 73 -1 O ARG D 71 N TRP D 57 SHEET 3 D 5 LYS D 16 SER D 25 -1 N ILE D 19 O ILE D 70 SHEET 4 D 5 ASN D 93 SER D 103 -1 O LEU D 100 N ALA D 20 SHEET 5 D 5 ASP D 89 ILE D 90 -1 N ILE D 90 O ASN D 93 SHEET 1 E 5 TRP E 57 ASP E 62 0 SHEET 2 E 5 THR E 67 ASP E 73 -1 O ARG E 71 N TRP E 57 SHEET 3 E 5 LYS E 16 SER E 25 -1 N ILE E 19 O ILE E 70 SHEET 4 E 5 ASN E 93 SER E 103 -1 O LEU E 100 N ALA E 20 SHEET 5 E 5 ASP E 89 ILE E 90 -1 N ILE E 90 O ASN E 93 CRYST1 107.500 107.500 179.000 90.00 90.00 90.00 P 41 21 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005587 0.00000