HEADER DNA BINDING PROTEIN 06-SEP-05 2AY0 TITLE STRUCTURE OF THE LYS9MET MUTANT OF THE E. COLI PROLINE UTILIZATION A TITLE 2 (PUTA) DNA-BINDING DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PUTA PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 1-52; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PUTA, POAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS PUTA, RIBBON-HELIX-HELIX, DNA-BINDING DOMAIN, PROLINE CATABOLISM, KEYWDS 2 PROLINE UTILIZATION A, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.LARSON,J.P.SCHUERMANN,Y.ZHOU,J.L.JENKINS,D.F.BECKER,J.J.TANNER REVDAT 7 14-FEB-24 2AY0 1 REMARK REVDAT 6 20-OCT-21 2AY0 1 REMARK SEQADV REVDAT 5 13-JUL-11 2AY0 1 VERSN REVDAT 4 24-FEB-09 2AY0 1 VERSN REVDAT 3 15-FEB-07 2AY0 1 JRNL REVDAT 2 05-DEC-06 2AY0 1 JRNL REVDAT 1 15-AUG-06 2AY0 0 JRNL AUTH J.D.LARSON,J.L.JENKINS,J.P.SCHUERMANN,Y.ZHOU,D.F.BECKER, JRNL AUTH 2 J.J.TANNER JRNL TITL CRYSTAL STRUCTURES OF THE DNA-BINDING DOMAIN OF ESCHERICHIA JRNL TITL 2 COLI PROLINE UTILIZATION A FLAVOPROTEIN AND ANALYSIS OF THE JRNL TITL 3 ROLE OF LYS9 IN DNA RECOGNITION. JRNL REF PROTEIN SCI. V. 15 2630 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17001030 JRNL DOI 10.1110/PS.062425706 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2102 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1997 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2842 ; 1.139 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4596 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 4.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;32.346 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;15.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2253 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 425 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 477 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1913 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1016 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1276 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 58 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 536 ; 0.137 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2104 ; 1.007 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 738 ; 2.473 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3130 42.7380 10.8140 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: -0.1271 REMARK 3 T33: -0.1213 T12: 0.0860 REMARK 3 T13: -0.0081 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.2033 L22: 4.7459 REMARK 3 L33: 10.6318 L12: -1.5858 REMARK 3 L13: 3.4670 L23: -2.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.2110 S12: -0.0152 S13: -0.1848 REMARK 3 S21: -0.2905 S22: -0.1569 S23: -0.0056 REMARK 3 S31: 0.4869 S32: 0.2704 S33: -0.0541 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4660 39.8940 20.0350 REMARK 3 T TENSOR REMARK 3 T11: -0.1894 T22: -0.0783 REMARK 3 T33: -0.1399 T12: 0.0813 REMARK 3 T13: -0.0350 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.2266 L22: 8.3023 REMARK 3 L33: 10.4517 L12: -0.0055 REMARK 3 L13: 0.3153 L23: -5.6434 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.0755 S13: 0.1329 REMARK 3 S21: -0.3419 S22: -0.1229 S23: 0.2529 REMARK 3 S31: -0.1346 S32: -0.0792 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3880 27.2480 19.5060 REMARK 3 T TENSOR REMARK 3 T11: -0.1414 T22: -0.0346 REMARK 3 T33: -0.1549 T12: 0.1121 REMARK 3 T13: 0.0344 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 4.0697 L22: 8.4073 REMARK 3 L33: 6.4585 L12: -0.2911 REMARK 3 L13: -0.0579 L23: 2.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.1763 S13: -0.1729 REMARK 3 S21: -0.1328 S22: -0.0365 S23: -0.0977 REMARK 3 S31: 0.2191 S32: 0.3264 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 47 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2180 21.2010 14.1920 REMARK 3 T TENSOR REMARK 3 T11: -0.0313 T22: -0.0635 REMARK 3 T33: -0.1241 T12: 0.0788 REMARK 3 T13: -0.0046 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 6.7255 L22: 7.0391 REMARK 3 L33: 4.9950 L12: -1.0593 REMARK 3 L13: -2.0368 L23: 2.5503 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.2613 S13: 0.0415 REMARK 3 S21: -0.0258 S22: -0.1426 S23: 0.2568 REMARK 3 S31: 0.0541 S32: -0.2278 S33: 0.1761 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 45 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8260 7.7580 14.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: -0.0596 REMARK 3 T33: -0.1082 T12: 0.0640 REMARK 3 T13: 0.0178 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.8279 L22: 4.5871 REMARK 3 L33: 5.4508 L12: -2.0700 REMARK 3 L13: -0.3556 L23: 1.9827 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: -0.3015 S13: -0.0500 REMARK 3 S21: 0.4077 S22: 0.0289 S23: 0.1608 REMARK 3 S31: 0.3796 S32: 0.0608 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 3 F 45 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9270 10.6790 11.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: -0.1420 REMARK 3 T33: -0.1298 T12: 0.0790 REMARK 3 T13: -0.0165 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 7.2346 L22: 3.2109 REMARK 3 L33: 5.1189 L12: 0.2830 REMARK 3 L13: 1.1067 L23: 0.2305 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: -0.2980 S13: 0.3784 REMARK 3 S21: 0.1298 S22: 0.0096 S23: -0.0195 REMARK 3 S31: -0.2250 S32: 0.1103 S33: 0.1852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987121, 0.979553, 0.979144 REMARK 200 MONOCHROMATOR : ALS BEAMLINE 4.2.2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2LDZ REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.470 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7-3.0 M NACL, 5 MM DITHIOTHREITOL, REMARK 280 PH 3.0-5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLE IS A DIMER. THERE ARE 3 BIOLOGICAL REMARK 300 DIMERS IN THE ASYMMETRIC UNIT: A/B, C/D AND E/F. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 71 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 ASP B 48 REMARK 465 THR B 49 REMARK 465 LEU B 50 REMARK 465 PRO B 51 REMARK 465 GLU B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 HIS B 58 REMARK 465 MET C 1 REMARK 465 ASN C 46 REMARK 465 SER C 47 REMARK 465 ASP C 48 REMARK 465 THR C 49 REMARK 465 LEU C 50 REMARK 465 PRO C 51 REMARK 465 GLU C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 HIS C 56 REMARK 465 HIS C 57 REMARK 465 HIS C 58 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ASP D 48 REMARK 465 THR D 49 REMARK 465 LEU D 50 REMARK 465 PRO D 51 REMARK 465 GLU D 52 REMARK 465 HIS D 53 REMARK 465 HIS D 54 REMARK 465 HIS D 55 REMARK 465 HIS D 56 REMARK 465 HIS D 57 REMARK 465 HIS D 58 REMARK 465 MET E 1 REMARK 465 ASN E 46 REMARK 465 SER E 47 REMARK 465 ASP E 48 REMARK 465 THR E 49 REMARK 465 LEU E 50 REMARK 465 PRO E 51 REMARK 465 GLU E 52 REMARK 465 HIS E 53 REMARK 465 HIS E 54 REMARK 465 HIS E 55 REMARK 465 HIS E 56 REMARK 465 HIS E 57 REMARK 465 HIS E 58 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 ASN F 46 REMARK 465 SER F 47 REMARK 465 ASP F 48 REMARK 465 THR F 49 REMARK 465 LEU F 50 REMARK 465 PRO F 51 REMARK 465 GLU F 52 REMARK 465 HIS F 53 REMARK 465 HIS F 54 REMARK 465 HIS F 55 REMARK 465 HIS F 56 REMARK 465 HIS F 57 REMARK 465 HIS F 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLN A 43 CD OE1 NE2 REMARK 470 LYS B 19 NZ REMARK 470 ARG B 24 CZ NH1 NH2 REMARK 470 GLN B 43 OE1 NE2 REMARK 470 ARG C 24 CD NE CZ NH1 NH2 REMARK 470 GLU C 45 CG CD OE1 OE2 REMARK 470 LYS D 19 CD CE NZ REMARK 470 ARG D 24 CD NE CZ NH1 NH2 REMARK 470 LYS E 19 CD CE NZ REMARK 470 ARG E 24 NE CZ NH1 NH2 REMARK 470 LYS F 19 NZ REMARK 470 GLN F 43 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 32 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 44 75.48 -67.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 59 DBREF 2AY0 A 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 B 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 C 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 D 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 E 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 F 1 52 UNP P09546 PUTA_ECOLI 1 52 SEQADV 2AY0 MET A 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS A 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET B 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS B 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET C 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS C 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET D 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS D 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET E 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS E 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET F 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS F 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 58 UNP P09546 EXPRESSION TAG SEQRES 1 A 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 A 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 A 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 A 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 A 58 HIS HIS HIS HIS HIS HIS SEQRES 1 B 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 B 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 B 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 B 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 B 58 HIS HIS HIS HIS HIS HIS SEQRES 1 C 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 C 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 C 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 C 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 C 58 HIS HIS HIS HIS HIS HIS SEQRES 1 D 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 D 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 D 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 D 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 D 58 HIS HIS HIS HIS HIS HIS SEQRES 1 E 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 E 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 E 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 E 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 E 58 HIS HIS HIS HIS HIS HIS SEQRES 1 F 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 F 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 F 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 F 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 F 58 HIS HIS HIS HIS HIS HIS HET CL A 59 1 HET CL B 59 1 HET CL C 59 1 HET CL D 59 1 HET CL E 59 1 HET CL F 59 1 HETNAM CL CHLORIDE ION FORMUL 7 CL 6(CL 1-) FORMUL 13 HOH *67(H2 O) HELIX 1 1 ASP A 11 ILE A 25 1 15 HELIX 2 2 THR A 28 LEU A 44 1 17 HELIX 3 3 ASP B 11 ARG B 24 1 14 HELIX 4 4 THR B 28 LEU B 44 1 17 HELIX 5 5 ASP C 11 ASP C 26 1 16 HELIX 6 6 THR C 28 GLU C 45 1 18 HELIX 7 7 ASP D 12 ILE D 25 1 14 HELIX 8 8 THR D 28 SER D 47 1 20 HELIX 9 9 ASP E 11 ILE E 25 1 15 HELIX 10 10 THR E 28 GLU E 45 1 18 HELIX 11 11 ASP F 12 ILE F 25 1 14 HELIX 12 12 THR F 28 GLU F 45 1 18 SHEET 1 A 2 THR A 4 LEU A 10 0 SHEET 2 A 2 THR B 4 LEU B 10 -1 O LEU B 10 N THR A 4 SHEET 1 B 2 THR C 3 LEU C 10 0 SHEET 2 B 2 THR D 4 ASP D 11 -1 O LEU D 10 N THR C 4 SHEET 1 C 2 THR E 3 LEU E 10 0 SHEET 2 C 2 THR F 4 ASP F 11 -1 O LEU F 10 N THR E 4 SITE 1 AC1 3 ARG D 27 TRP D 31 MET F 9 SITE 1 AC2 5 VAL A 8 MET A 9 LYS B 34 ARG C 27 SITE 2 AC2 5 TRP C 31 SITE 1 AC3 4 ARG A 27 TRP A 31 MET E 9 LYS F 34 SITE 1 AC4 4 MET C 9 HOH C 65 ARG E 27 TRP E 31 SITE 1 AC5 3 MET B 9 ARG F 27 TRP F 31 SITE 1 AC6 5 ARG B 27 TRP B 31 LYS C 34 HOH C 68 SITE 2 AC6 5 MET D 9 CRYST1 72.070 91.494 69.606 90.00 119.21 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013875 0.000000 0.007758 0.00000 SCALE2 0.000000 0.010930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016460 0.00000