data_2AYG # _entry.id 2AYG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AYG pdb_00002ayg 10.2210/pdb2ayg/pdb NDB PD0717 ? ? RCSB RCSB034454 ? ? WWPDB D_1000034454 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1R8H 'same protein, no DNA bound' unspecified PDB 2AYB . unspecified PDB 2AYE . unspecified # _pdbx_database_status.entry_id 2AYG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-09-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hooley, E.' 1 'Brady, R.L.' 2 'Gaston, K.' 3 # _citation.id primary _citation.title 'The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 34 _citation.page_first 3897 _citation.page_last 3908 _citation.year 2006 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16914454 _citation.pdbx_database_id_DOI 10.1093/nar/gkl466 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hooley, E.' 1 ? primary 'Fairweather, V.' 2 ? primary 'Clarke, A.R.' 3 ? primary 'Gaston, K.' 4 ? primary 'Brady, R.L.' 5 ? # _cell.length_a 73.449 _cell.length_b 73.449 _cell.length_c 109.237 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 2AYG _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 2AYG _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*GP*C)-3'" 5516.579 2 ? ? ? ? 2 polymer man 'Regulatory protein E2' 10240.854 2 ? ? 'C terminal domain' ? 3 water nat water 18.015 19 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DA)(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)(DT)(DT)(DG)(DC)' GCAACCGAATTCGGTTGC C,D ? 2 'polypeptide(L)' no no ;SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLG FMSMHLL ; ;SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLG FMSMHLL ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DA n 1 9 DA n 1 10 DT n 1 11 DT n 1 12 DC n 1 13 DG n 1 14 DG n 1 15 DT n 1 16 DT n 1 17 DG n 1 18 DC n 2 1 SER n 2 2 SER n 2 3 ALA n 2 4 THR n 2 5 PRO n 2 6 ILE n 2 7 VAL n 2 8 GLN n 2 9 PHE n 2 10 GLN n 2 11 GLY n 2 12 GLU n 2 13 SER n 2 14 ASN n 2 15 CYS n 2 16 LEU n 2 17 LYS n 2 18 CYS n 2 19 PHE n 2 20 ARG n 2 21 TYR n 2 22 ARG n 2 23 LEU n 2 24 ASN n 2 25 ASP n 2 26 LYS n 2 27 HIS n 2 28 ARG n 2 29 HIS n 2 30 LEU n 2 31 PHE n 2 32 ASP n 2 33 LEU n 2 34 ILE n 2 35 SER n 2 36 SER n 2 37 THR n 2 38 TRP n 2 39 HIS n 2 40 TRP n 2 41 ALA n 2 42 SER n 2 43 PRO n 2 44 LYS n 2 45 ALA n 2 46 PRO n 2 47 HIS n 2 48 LYS n 2 49 HIS n 2 50 ALA n 2 51 ILE n 2 52 VAL n 2 53 THR n 2 54 VAL n 2 55 THR n 2 56 TYR n 2 57 HIS n 2 58 SER n 2 59 GLU n 2 60 GLU n 2 61 GLN n 2 62 ARG n 2 63 GLN n 2 64 GLN n 2 65 PHE n 2 66 LEU n 2 67 ASN n 2 68 VAL n 2 69 VAL n 2 70 LYS n 2 71 ILE n 2 72 PRO n 2 73 PRO n 2 74 THR n 2 75 ILE n 2 76 ARG n 2 77 HIS n 2 78 LYS n 2 79 LEU n 2 80 GLY n 2 81 PHE n 2 82 MET n 2 83 SER n 2 84 MET n 2 85 HIS n 2 86 LEU n 2 87 LEU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Alphapapillomavirus _entity_src_gen.pdbx_gene_src_gene E2 _entity_src_gen.gene_src_species 'Human papillomavirus - 6' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human papillomavirus type 6a' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 37122 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain XL1-Blue _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKK223-3 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VE2_HPV6A Q84294 2 ;SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLG FMSLHLL ; 282 ? 2 PDB 2AYG 2AYG 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2AYG A 1 ? 87 ? Q84294 282 ? 368 ? 281 366 2 1 2AYG B 1 ? 87 ? Q84294 282 ? 368 ? 281 366 3 2 2AYG C 1 ? 18 ? 2AYG 1 ? 18 ? 1 18 4 2 2AYG D 1 ? 18 ? 2AYG 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2AYG MET A 82 ? UNP Q84294 LEU 365 variant 361 1 2 2AYG MET B 82 ? UNP Q84294 LEU 365 variant 361 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2AYG _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'sodium chloride, Hepes, ammonium sulphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium chloride' ? ? ? 1 2 1 Hepes ? ? ? 1 3 1 'ammonium sulphate' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'sodium chloride' ? ? ? 1 6 2 Hepes ? ? ? 1 7 2 'ammonium sulphate' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2005-04-05 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si Crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.488 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX14.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.488 _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX14.1 # _reflns.entry_id 2AYG _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 3.1 _reflns.d_resolution_low 63.630 _reflns.number_all 5807 _reflns.number_obs 6087 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.18 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.351 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.number_unique_all 429 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 3.100 _refine.ls_d_res_low 63.630 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.850 _refine.ls_number_reflns_obs 6085 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.288 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 278 _refine.B_iso_mean 64.548 _refine.aniso_B[1][1] 4.170 _refine.aniso_B[2][2] 4.170 _refine.aniso_B[3][3] -6.250 _refine.aniso_B[1][2] 2.080 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.875 _refine.pdbx_overall_ESU_R_Free 0.557 _refine.overall_SU_ML 0.476 _refine.overall_SU_B 28.744 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2AYG _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 5807 _refine.ls_R_factor_obs 0.247 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB Entry 1JJ4' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1444 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 2195 _refine_hist.d_res_high 3.100 _refine_hist.d_res_low 63.630 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2305 0.015 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3275 2.322 2.333 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 172 12.000 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 70 36.469 22.286 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 254 22.032 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 22.469 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 358 0.260 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1498 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1231 0.278 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1439 0.325 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 68 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.227 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 3 0.029 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 890 0.744 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1429 1.376 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1830 1.203 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1846 2.085 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_asym_id 1 'TIGHT POSITIONAL' A 588 0.040 0.050 ? ? ? ? ? 1 'X-RAY DIFFRACTION' 1 ? 1 'TIGHT THERMAL' A 588 0.090 0.500 ? ? ? ? ? 1 'X-RAY DIFFRACTION' 2 ? # _refine_ls_shell.d_res_high 3.102 _refine_ls_shell.d_res_low 3.182 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.330 _refine_ls_shell.number_reflns_R_work 429 _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.R_factor_R_free 0.354 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B 1 7 A 1 8 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 C ALA 3 . C LEU 23 . A ALA 283 A LEU 303 1 ? 1 2 1 D ALA 3 . D LEU 23 . B ALA 283 B LEU 303 1 ? 1 3 2 C ARG 28 . C TRP 40 . A ARG 307 A TRP 319 1 ? 1 4 2 D ARG 28 . D TRP 40 . B ARG 307 B TRP 319 1 ? 1 5 3 C ALA 50 . C PHE 81 . A ALA 329 A PHE 360 1 ? 1 6 3 D ALA 50 . D PHE 81 . B ALA 329 B PHE 360 1 ? 1 7 4 C HIS 85 . C LEU 87 . A HIS 364 A LEU 366 1 ? 1 8 4 D HIS 85 . D LEU 87 . B HIS 364 B LEU 366 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2AYG _struct.title 'Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA target' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AYG _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'beta barrel, double helix, protein-DNA complex, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details 'biological assembly is a protein dimer bound to double stranded DNA' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 12 ? ASP C 25 A GLU A 292 ASP A 304 1 ? 14 HELX_P HELX_P2 2 HIS C 27 ? PHE C 31 ? HIS A 306 PHE A 310 5 ? 5 HELX_P HELX_P3 3 SER C 58 ? VAL C 69 ? SER A 337 VAL A 348 1 ? 12 HELX_P HELX_P4 4 GLU D 12 ? ASP D 25 A GLU B 292 ASP B 304 1 ? 14 HELX_P HELX_P5 5 HIS D 27 ? PHE D 31 ? HIS B 306 PHE B 310 5 ? 5 HELX_P HELX_P6 6 SER D 58 ? VAL D 69 ? SER B 337 VAL B 348 1 ? 12 HELX_P HELX_P7 7 HIS D 85 ? LEU D 87 ? HIS B 364 LEU B 366 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 1 D DC 18 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DT 16 O4 ? ? C DC 2 D DT 16 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 2 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 2 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 2 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 16 N3 ? ? C DA 3 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 16 O4 ? ? C DA 3 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 4 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 4 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 14 N1 ? ? C DC 5 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 14 O6 ? ? C DC 5 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 14 N2 ? ? C DC 5 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 13 N1 ? ? C DC 6 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 13 O6 ? ? C DC 6 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 13 N2 ? ? C DC 6 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 12 N3 ? ? C DG 7 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 12 O2 ? ? C DG 7 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 12 N4 ? ? C DG 7 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 8 D DT 11 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 9 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 9 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 10 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 10 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 11 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 11 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 12 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 12 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 12 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 6 N3 ? ? C DG 13 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 6 O2 ? ? C DG 13 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 13 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 5 N3 ? ? C DG 14 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 5 O2 ? ? C DG 14 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 5 N4 ? ? C DG 14 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 15 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 15 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DC 2 N4 ? ? C DT 16 D DC 2 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog38 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 16 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 16 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 17 D DC 2 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 1 O6 ? ? C DC 18 D DG 1 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 25 C . A ASP 304 A LYS 26 C ? LYS 305 A 1 -13.96 2 SER 42 C . ? SER 321 A PRO 43 C ? PRO 322 A 1 -0.83 3 PRO 43 C . ? PRO 322 A LYS 44 C ? LYS 323 A 1 -5.25 4 SER 83 C . ? SER 362 A MET 84 C ? MET 363 A 1 -1.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA C 50 ? THR C 55 ? ALA A 329 THR A 334 A 2 THR C 4 ? GLY C 11 ? THR A 284 GLY A 291 A 3 ARG C 76 ? MET C 82 ? ARG A 355 MET A 361 B 1 ALA D 50 ? THR D 55 ? ALA B 329 THR B 334 B 2 ALA D 3 ? GLY D 11 ? ALA B 283 GLY B 291 B 3 ARG D 76 ? SER D 83 ? ARG B 355 SER B 362 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 54 ? O VAL A 333 N VAL C 7 ? N VAL A 287 A 2 3 N THR C 4 ? N THR A 284 O MET C 82 ? O MET A 361 B 1 2 O VAL D 54 ? O VAL B 333 N VAL D 7 ? N VAL B 287 B 2 3 N ILE D 6 ? N ILE B 286 O GLY D 80 ? O GLY B 359 # _atom_sites.entry_id 2AYG _atom_sites.fract_transf_matrix[1][1] 0.01362 _atom_sites.fract_transf_matrix[1][2] 0.00786 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01572 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00915 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 DC 2 2 2 DC C C . n A 1 3 DA 3 3 3 DA A C . n A 1 4 DA 4 4 4 DA A C . n A 1 5 DC 5 5 5 DC C C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DG 7 7 7 DG G C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DA 9 9 9 DA A C . n A 1 10 DT 10 10 10 DT T C . n A 1 11 DT 11 11 11 DT T C . n A 1 12 DC 12 12 12 DC C C . n A 1 13 DG 13 13 13 DG G C . n A 1 14 DG 14 14 14 DG G C . n A 1 15 DT 15 15 15 DT T C . n A 1 16 DT 16 16 16 DT T C . n A 1 17 DG 17 17 17 DG G C . n A 1 18 DC 18 18 18 DC C C . n B 1 1 DG 1 1 1 DG G D . n B 1 2 DC 2 2 2 DC C D . n B 1 3 DA 3 3 3 DA A D . n B 1 4 DA 4 4 4 DA A D . n B 1 5 DC 5 5 5 DC C D . n B 1 6 DC 6 6 6 DC C D . n B 1 7 DG 7 7 7 DG G D . n B 1 8 DA 8 8 8 DA A D . n B 1 9 DA 9 9 9 DA A D . n B 1 10 DT 10 10 10 DT T D . n B 1 11 DT 11 11 11 DT T D . n B 1 12 DC 12 12 12 DC C D . n B 1 13 DG 13 13 13 DG G D . n B 1 14 DG 14 14 14 DG G D . n B 1 15 DT 15 15 15 DT T D . n B 1 16 DT 16 16 16 DT T D . n B 1 17 DG 17 17 17 DG G D . n B 1 18 DC 18 18 18 DC C D . n C 2 1 SER 1 281 281 SER SER A . n C 2 2 SER 2 282 282 SER SER A . n C 2 3 ALA 3 283 283 ALA ALA A . n C 2 4 THR 4 284 284 THR THR A . n C 2 5 PRO 5 285 285 PRO PRO A . n C 2 6 ILE 6 286 286 ILE ILE A . n C 2 7 VAL 7 287 287 VAL VAL A . n C 2 8 GLN 8 288 288 GLN GLN A . n C 2 9 PHE 9 289 289 PHE PHE A . n C 2 10 GLN 10 290 290 GLN GLN A . n C 2 11 GLY 11 291 291 GLY GLY A . n C 2 12 GLU 12 292 292 GLU GLU A . n C 2 13 SER 13 293 293 SER SER A . n C 2 14 ASN 14 294 294 ASN ASN A . n C 2 15 CYS 15 295 295 CYS CYS A . n C 2 16 LEU 16 296 296 LEU LEU A . n C 2 17 LYS 17 297 297 LYS LYS A . n C 2 18 CYS 18 298 298 CYS CYS A . n C 2 19 PHE 19 299 299 PHE PHE A . n C 2 20 ARG 20 300 300 ARG ARG A . n C 2 21 TYR 21 301 301 TYR TYR A . n C 2 22 ARG 22 302 302 ARG ARG A . n C 2 23 LEU 23 303 303 LEU LEU A . n C 2 24 ASN 24 304 304 ASN ASN A . n C 2 25 ASP 25 304 304 ASP ASP A A n C 2 26 LYS 26 305 305 LYS LYS A . n C 2 27 HIS 27 306 306 HIS HIS A . n C 2 28 ARG 28 307 307 ARG ARG A . n C 2 29 HIS 29 308 308 HIS HIS A . n C 2 30 LEU 30 309 309 LEU LEU A . n C 2 31 PHE 31 310 310 PHE PHE A . n C 2 32 ASP 32 311 311 ASP ASP A . n C 2 33 LEU 33 312 312 LEU LEU A . n C 2 34 ILE 34 313 313 ILE ILE A . n C 2 35 SER 35 314 314 SER SER A . n C 2 36 SER 36 315 315 SER SER A . n C 2 37 THR 37 316 316 THR THR A . n C 2 38 TRP 38 317 317 TRP TRP A . n C 2 39 HIS 39 318 318 HIS HIS A . n C 2 40 TRP 40 319 319 TRP TRP A . n C 2 41 ALA 41 320 320 ALA ALA A . n C 2 42 SER 42 321 321 SER SER A . n C 2 43 PRO 43 322 322 PRO PRO A . n C 2 44 LYS 44 323 323 LYS LYS A . n C 2 45 ALA 45 324 324 ALA ALA A . n C 2 46 PRO 46 325 325 PRO PRO A . n C 2 47 HIS 47 326 326 HIS HIS A . n C 2 48 LYS 48 327 327 LYS LYS A . n C 2 49 HIS 49 328 328 HIS HIS A . n C 2 50 ALA 50 329 329 ALA ALA A . n C 2 51 ILE 51 330 330 ILE ILE A . n C 2 52 VAL 52 331 331 VAL VAL A . n C 2 53 THR 53 332 332 THR THR A . n C 2 54 VAL 54 333 333 VAL VAL A . n C 2 55 THR 55 334 334 THR THR A . n C 2 56 TYR 56 335 335 TYR TYR A . n C 2 57 HIS 57 336 336 HIS HIS A . n C 2 58 SER 58 337 337 SER SER A . n C 2 59 GLU 59 338 338 GLU GLU A . n C 2 60 GLU 60 339 339 GLU GLU A . n C 2 61 GLN 61 340 340 GLN GLN A . n C 2 62 ARG 62 341 341 ARG ARG A . n C 2 63 GLN 63 342 342 GLN GLN A . n C 2 64 GLN 64 343 343 GLN GLN A . n C 2 65 PHE 65 344 344 PHE PHE A . n C 2 66 LEU 66 345 345 LEU LEU A . n C 2 67 ASN 67 346 346 ASN ASN A . n C 2 68 VAL 68 347 347 VAL VAL A . n C 2 69 VAL 69 348 348 VAL VAL A . n C 2 70 LYS 70 349 349 LYS LYS A . n C 2 71 ILE 71 350 350 ILE ILE A . n C 2 72 PRO 72 351 351 PRO PRO A . n C 2 73 PRO 73 352 352 PRO PRO A . n C 2 74 THR 74 353 353 THR THR A . n C 2 75 ILE 75 354 354 ILE ILE A . n C 2 76 ARG 76 355 355 ARG ARG A . n C 2 77 HIS 77 356 356 HIS HIS A . n C 2 78 LYS 78 357 357 LYS LYS A . n C 2 79 LEU 79 358 358 LEU LEU A . n C 2 80 GLY 80 359 359 GLY GLY A . n C 2 81 PHE 81 360 360 PHE PHE A . n C 2 82 MET 82 361 361 MET MET A . n C 2 83 SER 83 362 362 SER SER A . n C 2 84 MET 84 363 363 MET MET A . n C 2 85 HIS 85 364 364 HIS HIS A . n C 2 86 LEU 86 365 365 LEU LEU A . n C 2 87 LEU 87 366 366 LEU LEU A . n D 2 1 SER 1 281 281 SER SER B . n D 2 2 SER 2 282 282 SER SER B . n D 2 3 ALA 3 283 283 ALA ALA B . n D 2 4 THR 4 284 284 THR THR B . n D 2 5 PRO 5 285 285 PRO PRO B . n D 2 6 ILE 6 286 286 ILE ILE B . n D 2 7 VAL 7 287 287 VAL VAL B . n D 2 8 GLN 8 288 288 GLN GLN B . n D 2 9 PHE 9 289 289 PHE PHE B . n D 2 10 GLN 10 290 290 GLN GLN B . n D 2 11 GLY 11 291 291 GLY GLY B . n D 2 12 GLU 12 292 292 GLU GLU B . n D 2 13 SER 13 293 293 SER SER B . n D 2 14 ASN 14 294 294 ASN ASN B . n D 2 15 CYS 15 295 295 CYS CYS B . n D 2 16 LEU 16 296 296 LEU LEU B . n D 2 17 LYS 17 297 297 LYS LYS B . n D 2 18 CYS 18 298 298 CYS CYS B . n D 2 19 PHE 19 299 299 PHE PHE B . n D 2 20 ARG 20 300 300 ARG ARG B . n D 2 21 TYR 21 301 301 TYR TYR B . n D 2 22 ARG 22 302 302 ARG ARG B . n D 2 23 LEU 23 303 303 LEU LEU B . n D 2 24 ASN 24 304 304 ASN ASN B . n D 2 25 ASP 25 304 304 ASP ASP B A n D 2 26 LYS 26 305 305 LYS LYS B . n D 2 27 HIS 27 306 306 HIS HIS B . n D 2 28 ARG 28 307 307 ARG ARG B . n D 2 29 HIS 29 308 308 HIS HIS B . n D 2 30 LEU 30 309 309 LEU LEU B . n D 2 31 PHE 31 310 310 PHE PHE B . n D 2 32 ASP 32 311 311 ASP ASP B . n D 2 33 LEU 33 312 312 LEU LEU B . n D 2 34 ILE 34 313 313 ILE ILE B . n D 2 35 SER 35 314 314 SER SER B . n D 2 36 SER 36 315 315 SER SER B . n D 2 37 THR 37 316 316 THR THR B . n D 2 38 TRP 38 317 317 TRP TRP B . n D 2 39 HIS 39 318 318 HIS HIS B . n D 2 40 TRP 40 319 319 TRP TRP B . n D 2 41 ALA 41 320 320 ALA ALA B . n D 2 42 SER 42 321 321 SER SER B . n D 2 43 PRO 43 322 322 PRO PRO B . n D 2 44 LYS 44 323 323 LYS LYS B . n D 2 45 ALA 45 324 324 ALA ALA B . n D 2 46 PRO 46 325 325 PRO PRO B . n D 2 47 HIS 47 326 326 HIS HIS B . n D 2 48 LYS 48 327 327 LYS LYS B . n D 2 49 HIS 49 328 328 HIS HIS B . n D 2 50 ALA 50 329 329 ALA ALA B . n D 2 51 ILE 51 330 330 ILE ILE B . n D 2 52 VAL 52 331 331 VAL VAL B . n D 2 53 THR 53 332 332 THR THR B . n D 2 54 VAL 54 333 333 VAL VAL B . n D 2 55 THR 55 334 334 THR THR B . n D 2 56 TYR 56 335 335 TYR TYR B . n D 2 57 HIS 57 336 336 HIS HIS B . n D 2 58 SER 58 337 337 SER SER B . n D 2 59 GLU 59 338 338 GLU GLU B . n D 2 60 GLU 60 339 339 GLU GLU B . n D 2 61 GLN 61 340 340 GLN GLN B . n D 2 62 ARG 62 341 341 ARG ARG B . n D 2 63 GLN 63 342 342 GLN GLN B . n D 2 64 GLN 64 343 343 GLN GLN B . n D 2 65 PHE 65 344 344 PHE PHE B . n D 2 66 LEU 66 345 345 LEU LEU B . n D 2 67 ASN 67 346 346 ASN ASN B . n D 2 68 VAL 68 347 347 VAL VAL B . n D 2 69 VAL 69 348 348 VAL VAL B . n D 2 70 LYS 70 349 349 LYS LYS B . n D 2 71 ILE 71 350 350 ILE ILE B . n D 2 72 PRO 72 351 351 PRO PRO B . n D 2 73 PRO 73 352 352 PRO PRO B . n D 2 74 THR 74 353 353 THR THR B . n D 2 75 ILE 75 354 354 ILE ILE B . n D 2 76 ARG 76 355 355 ARG ARG B . n D 2 77 HIS 77 356 356 HIS HIS B . n D 2 78 LYS 78 357 357 LYS LYS B . n D 2 79 LEU 79 358 358 LEU LEU B . n D 2 80 GLY 80 359 359 GLY GLY B . n D 2 81 PHE 81 360 360 PHE PHE B . n D 2 82 MET 82 361 361 MET MET B . n D 2 83 SER 83 362 362 SER SER B . n D 2 84 MET 84 363 363 MET MET B . n D 2 85 HIS 85 364 364 HIS HIS B . n D 2 86 LEU 86 365 365 LEU LEU B . n D 2 87 LEU 87 366 366 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 19 16 HOH HOH D . F 3 HOH 1 3 3 HOH HOH A . F 3 HOH 2 4 4 HOH HOH A . F 3 HOH 3 5 5 HOH HOH A . F 3 HOH 4 6 6 HOH HOH A . F 3 HOH 5 7 7 HOH HOH A . F 3 HOH 6 9 9 HOH HOH A . F 3 HOH 7 10 10 HOH HOH A . F 3 HOH 8 13 13 HOH HOH A . G 3 HOH 1 1 1 HOH HOH B . G 3 HOH 2 2 2 HOH HOH B . G 3 HOH 3 8 8 HOH HOH B . G 3 HOH 4 11 11 HOH HOH B . G 3 HOH 5 12 12 HOH HOH B . G 3 HOH 6 14 14 HOH HOH B . G 3 HOH 7 15 15 HOH HOH B . G 3 HOH 8 17 17 HOH HOH B . G 3 HOH 9 18 18 HOH HOH B . G 3 HOH 10 19 19 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ncs_dom_lim 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 4 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHASER . ? program 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 2 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" C DG 1 ? ? "C5'" C DG 1 ? ? 1.759 1.440 0.319 0.016 N 2 1 "O3'" C DC 2 ? ? "C3'" C DC 2 ? ? 1.348 1.419 -0.071 0.006 N 3 1 "O3'" C DC 12 ? ? "C3'" C DC 12 ? ? 1.376 1.419 -0.043 0.006 N 4 1 "O3'" D DC 2 ? ? "C3'" D DC 2 ? ? 1.335 1.419 -0.084 0.006 N 5 1 "O3'" D DC 12 ? ? "C3'" D DC 12 ? ? 1.352 1.419 -0.067 0.006 N 6 1 CB A LYS 327 ? ? CG A LYS 327 ? ? 1.305 1.521 -0.216 0.027 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" C DG 1 ? ? "C5'" C DG 1 ? ? "C4'" C DG 1 ? ? 101.94 109.40 -7.46 0.80 N 2 1 "O4'" C DC 2 ? ? "C4'" C DC 2 ? ? "C3'" C DC 2 ? ? 101.42 104.50 -3.08 0.40 N 3 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 114.29 108.30 5.99 0.30 N 4 1 "O4'" C DG 7 ? ? "C1'" C DG 7 ? ? N9 C DG 7 ? ? 111.97 108.30 3.67 0.30 N 5 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 113.12 108.30 4.82 0.30 N 6 1 "C3'" C DA 8 ? ? "O3'" C DA 8 ? ? P C DA 9 ? ? 127.35 119.70 7.65 1.20 Y 7 1 "O4'" C DA 9 ? ? "C1'" C DA 9 ? ? N9 C DA 9 ? ? 111.73 108.30 3.43 0.30 N 8 1 N3 C DT 10 ? ? C2 C DT 10 ? ? O2 C DT 10 ? ? 118.57 122.30 -3.73 0.60 N 9 1 C6 C DT 10 ? ? C5 C DT 10 ? ? C7 C DT 10 ? ? 117.30 122.90 -5.60 0.60 N 10 1 "C3'" C DT 10 ? ? "O3'" C DT 10 ? ? P C DT 11 ? ? 129.77 119.70 10.07 1.20 Y 11 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 102.82 108.00 -5.18 0.70 N 12 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 103.03 108.00 -4.97 0.70 N 13 1 "C3'" C DG 13 ? ? "O3'" C DG 13 ? ? P C DG 14 ? ? 128.74 119.70 9.04 1.20 Y 14 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 113.62 108.30 5.32 0.30 N 15 1 "C3'" C DG 14 ? ? "O3'" C DG 14 ? ? P C DT 15 ? ? 127.19 119.70 7.49 1.20 Y 16 1 "O4'" C DT 16 ? ? "C4'" C DT 16 ? ? "C3'" C DT 16 ? ? 101.49 104.50 -3.01 0.40 N 17 1 "C3'" C DT 16 ? ? "C2'" C DT 16 ? ? "C1'" C DT 16 ? ? 91.34 102.40 -11.06 0.80 N 18 1 "O4'" C DT 16 ? ? "C1'" C DT 16 ? ? N1 C DT 16 ? ? 110.34 108.30 2.04 0.30 N 19 1 C6 C DT 16 ? ? C5 C DT 16 ? ? C7 C DT 16 ? ? 117.91 122.90 -4.99 0.60 N 20 1 "C1'" D DG 1 ? ? "O4'" D DG 1 ? ? "C4'" D DG 1 ? ? 104.06 110.10 -6.04 1.00 N 21 1 "C3'" D DG 1 ? ? "C2'" D DG 1 ? ? "C1'" D DG 1 ? ? 96.23 102.40 -6.17 0.80 N 22 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 112.72 108.30 4.42 0.30 N 23 1 "O4'" D DC 2 ? ? "C4'" D DC 2 ? ? "C3'" D DC 2 ? ? 100.58 104.50 -3.92 0.40 N 24 1 "C1'" D DC 2 ? ? "O4'" D DC 2 ? ? "C4'" D DC 2 ? ? 103.59 110.10 -6.51 1.00 N 25 1 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.28 108.30 1.98 0.30 N 26 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 111.33 108.30 3.03 0.30 N 27 1 "C3'" D DC 5 ? ? "O3'" D DC 5 ? ? P D DC 6 ? ? 129.48 119.70 9.78 1.20 Y 28 1 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 126.98 119.70 7.28 1.20 Y 29 1 "C3'" D DG 7 ? ? "O3'" D DG 7 ? ? P D DA 8 ? ? 130.24 119.70 10.54 1.20 Y 30 1 "C3'" D DA 8 ? ? "O3'" D DA 8 ? ? P D DA 9 ? ? 128.94 119.70 9.24 1.20 Y 31 1 "O4'" D DA 9 ? ? "C1'" D DA 9 ? ? N9 D DA 9 ? ? 112.01 108.30 3.71 0.30 N 32 1 "C3'" D DA 9 ? ? "O3'" D DA 9 ? ? P D DT 10 ? ? 127.93 119.70 8.23 1.20 Y 33 1 "O4'" D DT 10 ? ? "C1'" D DT 10 ? ? N1 D DT 10 ? ? 112.93 108.30 4.63 0.30 N 34 1 "O4'" D DT 11 ? ? "C1'" D DT 11 ? ? N1 D DT 11 ? ? 100.95 108.00 -7.05 0.70 N 35 1 C6 D DT 11 ? ? C5 D DT 11 ? ? C7 D DT 11 ? ? 111.09 122.90 -11.81 0.60 N 36 1 "C3'" D DT 11 ? ? "O3'" D DT 11 ? ? P D DC 12 ? ? 128.97 119.70 9.27 1.20 Y 37 1 "O4'" D DC 12 ? ? "C1'" D DC 12 ? ? N1 D DC 12 ? ? 101.47 108.00 -6.53 0.70 N 38 1 N1 D DC 12 ? ? C2 D DC 12 ? ? O2 D DC 12 ? ? 122.74 118.90 3.84 0.60 N 39 1 "C3'" D DG 13 ? ? "O3'" D DG 13 ? ? P D DG 14 ? ? 129.32 119.70 9.62 1.20 Y 40 1 "C5'" D DG 14 ? ? "C4'" D DG 14 ? ? "O4'" D DG 14 ? ? 116.93 109.80 7.13 1.10 N 41 1 "O4'" D DG 14 ? ? "C1'" D DG 14 ? ? N9 D DG 14 ? ? 115.89 108.30 7.59 0.30 N 42 1 N1 D DG 14 ? ? C6 D DG 14 ? ? O6 D DG 14 ? ? 115.76 119.90 -4.14 0.60 N 43 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? "C2'" D DT 15 ? ? 110.65 106.80 3.85 0.50 N 44 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? N1 D DT 15 ? ? 111.80 108.30 3.50 0.30 N 45 1 "C3'" D DT 15 ? ? "O3'" D DT 15 ? ? P D DT 16 ? ? 128.98 119.70 9.28 1.20 Y 46 1 "O4'" D DT 16 ? ? "C1'" D DT 16 ? ? N1 D DT 16 ? ? 112.42 108.30 4.12 0.30 N 47 1 C4 D DT 16 ? ? C5 D DT 16 ? ? C7 D DT 16 ? ? 122.86 119.00 3.86 0.60 N 48 1 "C3'" D DT 16 ? ? "O3'" D DT 16 ? ? P D DG 17 ? ? 128.07 119.70 8.37 1.20 Y 49 1 "C1'" D DC 18 ? ? "O4'" D DC 18 ? ? "C4'" D DC 18 ? ? 102.63 110.10 -7.47 1.00 N 50 1 "C3'" D DC 18 ? ? "C2'" D DC 18 ? ? "C1'" D DC 18 ? ? 95.47 102.40 -6.93 0.80 N 51 1 "O4'" D DC 18 ? ? "C1'" D DC 18 ? ? N1 D DC 18 ? ? 112.88 108.30 4.58 0.30 N 52 1 NE A ARG 302 ? ? CZ A ARG 302 ? ? NH1 A ARG 302 ? ? 116.34 120.30 -3.96 0.50 N 53 1 NE A ARG 302 ? ? CZ A ARG 302 ? ? NH2 A ARG 302 ? ? 123.36 120.30 3.06 0.50 N 54 1 NE B ARG 302 ? ? CZ B ARG 302 ? ? NH2 B ARG 302 ? ? 117.18 120.30 -3.12 0.50 N 55 1 C B SER 321 ? ? N B PRO 322 ? ? CA B PRO 322 ? ? 129.49 119.30 10.19 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 282 ? ? -93.85 55.77 2 1 ASP A 304 A ? 71.76 -146.40 3 1 LYS A 305 ? ? 128.79 -61.15 4 1 ASP A 311 ? ? -77.06 -83.85 5 1 SER A 321 ? ? -145.21 -105.76 6 1 LYS A 323 ? ? 44.35 -54.21 7 1 SER A 337 ? ? 173.32 153.96 8 1 SER A 362 ? ? 48.31 78.23 9 1 MET A 363 ? ? 143.04 -69.47 10 1 SER B 282 ? ? -78.94 38.14 11 1 LYS B 305 ? ? -170.16 -25.27 12 1 ASP B 311 ? ? -80.14 -83.76 13 1 PRO B 322 ? ? -12.94 -43.06 14 1 LYS B 323 ? ? -137.78 -56.67 15 1 ALA B 324 ? ? -112.23 -127.86 16 1 HIS B 326 ? ? 177.75 158.56 17 1 SER B 337 ? ? 173.43 154.94 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASN A 304 ? ? ASP A 304 A ? 83.83 2 1 PHE A 360 ? ? MET A 361 ? ? 135.96 3 1 MET A 361 ? ? SER A 362 ? ? 32.65 4 1 PRO B 322 ? ? LYS B 323 ? ? -53.00 5 1 LYS B 323 ? ? ALA B 324 ? ? -35.64 6 1 ALA B 324 ? ? PRO B 325 ? ? 137.16 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ASP _pdbx_validate_chiral.auth_seq_id 304 _pdbx_validate_chiral.PDB_ins_code A _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 C DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 0 A LYS 327 ? CG ? C LYS 48 CG 3 1 Y 0 A LYS 327 ? CD ? C LYS 48 CD 4 1 Y 0 A LYS 327 ? CE ? C LYS 48 CE 5 1 Y 0 A LYS 327 ? NZ ? C LYS 48 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AYG 'double helix' 2AYG 'b-form double helix' 2AYG 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 18 1_555 -0.066 4.891 -0.053 -1.668 12.186 -88.778 1 C_DG1:DC18_D C 1 ? D 18 ? ? ? 1 A DC 2 1_555 B DG 17 1_555 0.305 -0.076 1.059 -14.706 2.744 -6.162 2 C_DC2:DG17_D C 2 ? D 17 ? 19 1 1 A DA 3 1_555 B DT 16 1_555 1.083 -0.067 0.507 -1.744 -18.560 -8.299 3 C_DA3:DT16_D C 3 ? D 16 ? 20 1 1 A DA 4 1_555 B DT 15 1_555 0.499 -0.317 -0.600 -6.190 -11.916 -10.290 4 C_DA4:DT15_D C 4 ? D 15 ? 20 1 1 A DC 5 1_555 B DG 14 1_555 0.215 -0.272 -0.424 9.321 -5.655 -4.832 5 C_DC5:DG14_D C 5 ? D 14 ? 19 1 1 A DC 6 1_555 B DG 13 1_555 0.576 -0.391 -0.755 10.748 -3.603 -3.433 6 C_DC6:DG13_D C 6 ? D 13 ? 19 1 1 A DG 7 1_555 B DC 12 1_555 0.041 0.273 0.304 23.945 -16.160 7.245 7 C_DG7:DC12_D C 7 ? D 12 ? 19 1 1 A DA 8 1_555 B DT 11 1_555 0.463 5.495 -0.071 14.418 -4.751 -81.836 8 C_DA8:DT11_D C 8 ? D 11 ? ? ? 1 A DA 9 1_555 B DT 10 1_555 0.523 -0.104 0.030 2.283 -13.426 -6.828 9 C_DA9:DT10_D C 9 ? D 10 ? 20 1 1 A DT 10 1_555 B DA 9 1_555 -0.601 -0.210 -0.275 -0.546 -10.092 2.325 10 C_DT10:DA9_D C 10 ? D 9 ? 20 1 1 A DT 11 1_555 B DA 8 1_555 0.062 0.072 -0.187 -4.564 7.600 -4.497 11 C_DT11:DA8_D C 11 ? D 8 ? 20 1 1 A DC 12 1_555 B DG 7 1_555 0.064 0.108 -0.064 -15.368 -15.068 6.629 12 C_DC12:DG7_D C 12 ? D 7 ? 19 1 1 A DG 13 1_555 B DC 6 1_555 -0.954 -0.479 -0.073 4.132 3.428 1.140 13 C_DG13:DC6_D C 13 ? D 6 ? 19 1 1 A DG 14 1_555 B DC 5 1_555 -0.502 -0.432 -0.198 -1.684 -9.090 0.078 14 C_DG14:DC5_D C 14 ? D 5 ? 19 1 1 A DT 15 1_555 B DA 4 1_555 -0.093 -0.178 -0.619 7.315 -7.985 -5.995 15 C_DT15:DA4_D C 15 ? D 4 ? 20 1 1 A DT 16 1_555 B DA 3 1_555 -0.924 -0.145 -0.006 4.365 -19.550 -12.276 16 C_DT16:DA3_D C 16 ? D 3 ? 20 1 1 A DG 17 1_555 B DC 2 1_555 -0.709 0.234 1.226 13.573 -8.622 1.890 17 C_DG17:DC2_D C 17 ? D 2 ? ? 1 1 A DC 18 1_555 B DG 1 1_555 0.182 -5.354 -0.778 14.896 -0.058 78.877 18 C_DC18:DG1_D C 18 ? D 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 18 1_555 A DC 2 1_555 B DG 17 1_555 -0.709 1.987 3.713 -9.024 -1.260 -8.709 -7.447 -14.735 2.261 6.414 -45.936 -12.598 1 CC_DG1DC2:DG17DC18_DD C 1 ? D 18 ? C 2 ? D 17 ? 1 A DC 2 1_555 B DG 17 1_555 A DA 3 1_555 B DT 16 1_555 -0.464 0.205 3.029 4.562 9.298 36.066 -0.811 1.276 2.914 14.650 -7.188 37.476 2 CC_DC2DA3:DT16DG17_DD C 2 ? D 17 ? C 3 ? D 16 ? 1 A DA 3 1_555 B DT 16 1_555 A DA 4 1_555 B DT 15 1_555 -1.187 0.472 3.261 -2.545 -9.091 39.216 1.706 1.437 3.147 -13.311 3.726 40.293 3 CC_DA3DA4:DT15DT16_DD C 3 ? D 16 ? C 4 ? D 15 ? 1 A DA 4 1_555 B DT 15 1_555 A DC 5 1_555 B DG 14 1_555 0.544 -0.648 2.852 -4.954 -1.273 31.414 -0.981 -1.774 2.759 -2.332 9.074 31.818 4 CC_DA4DC5:DG14DT15_DD C 4 ? D 15 ? C 5 ? D 14 ? 1 A DC 5 1_555 B DG 14 1_555 A DC 6 1_555 B DG 13 1_555 -0.705 -0.473 3.235 2.574 1.146 34.209 -0.977 1.589 3.158 1.944 -4.366 34.321 5 CC_DC5DC6:DG13DG14_DD C 5 ? D 14 ? C 6 ? D 13 ? 1 A DC 6 1_555 B DG 13 1_555 A DG 7 1_555 B DC 12 1_555 0.931 0.934 3.272 1.576 20.698 23.971 -2.597 -1.380 3.144 41.293 -3.143 31.610 6 CC_DC6DG7:DC12DG13_DD C 6 ? D 13 ? C 7 ? D 12 ? 1 A DG 7 1_555 B DC 12 1_555 A DA 8 1_555 B DT 11 1_555 1.877 -2.315 3.962 -6.661 -14.213 79.069 -1.328 -1.673 4.121 -11.064 5.185 80.361 7 CC_DG7DA8:DT11DC12_DD C 7 ? D 12 ? C 8 ? D 11 ? 1 A DA 8 1_555 B DT 11 1_555 A DA 9 1_555 B DT 10 1_555 -0.055 1.635 2.745 10.529 4.163 1.526 2.310 15.209 0.912 30.278 -76.580 11.424 8 CC_DA8DA9:DT10DT11_DD C 8 ? D 11 ? C 9 ? D 10 ? 1 A DA 9 1_555 B DT 10 1_555 A DT 10 1_555 B DA 9 1_555 0.380 -0.859 3.290 0.934 -10.313 29.157 0.496 -0.523 3.400 -19.718 -1.787 30.904 9 CC_DA9DT10:DA9DT10_DD C 9 ? D 10 ? C 10 ? D 9 ? 1 A DT 10 1_555 B DA 9 1_555 A DT 11 1_555 B DA 8 1_555 -0.436 -0.592 3.353 -3.079 -1.888 39.525 -0.645 0.271 3.399 -2.785 4.541 39.683 10 CC_DT10DT11:DA8DA9_DD C 10 ? D 9 ? C 11 ? D 8 ? 1 A DT 11 1_555 B DA 8 1_555 A DC 12 1_555 B DG 7 1_555 0.074 -0.185 3.339 -0.020 -4.613 40.349 0.259 -0.109 3.340 -6.661 0.029 40.601 11 CC_DT11DC12:DG7DA8_DD C 11 ? D 8 ? C 12 ? D 7 ? 1 A DC 12 1_555 B DG 7 1_555 A DG 13 1_555 B DC 6 1_555 -0.473 1.212 2.989 -2.713 14.341 23.275 -1.091 0.307 3.215 31.845 6.023 27.419 12 CC_DC12DG13:DC6DG7_DD C 12 ? D 7 ? C 13 ? D 6 ? 1 A DG 13 1_555 B DC 6 1_555 A DG 14 1_555 B DC 5 1_555 0.635 -0.370 3.463 -0.324 2.747 34.773 -1.056 -1.111 3.419 4.588 0.541 34.879 13 CC_DG13DG14:DC5DC6_DD C 13 ? D 6 ? C 14 ? D 5 ? 1 A DG 14 1_555 B DC 5 1_555 A DT 15 1_555 B DA 4 1_555 -0.496 -0.825 3.064 7.594 0.162 34.583 -1.380 1.847 2.890 0.269 -12.587 35.383 14 CC_DG14DT15:DA4DC5_DD C 14 ? D 5 ? C 15 ? D 4 ? 1 A DT 15 1_555 B DA 4 1_555 A DT 16 1_555 B DA 3 1_555 1.029 0.643 3.195 8.681 -11.096 36.857 2.254 -0.511 3.043 -16.815 -13.156 39.370 15 CC_DT15DT16:DA3DA4_DD C 15 ? D 4 ? C 16 ? D 3 ? 1 A DT 16 1_555 B DA 3 1_555 A DG 17 1_555 B DC 2 1_555 0.812 0.385 2.932 -7.074 13.148 34.416 -0.952 -2.100 2.686 21.037 11.319 37.425 16 CC_DT16DG17:DC2DA3_DD C 16 ? D 3 ? C 17 ? D 2 ? 1 A DG 17 1_555 B DC 2 1_555 A DC 18 1_555 B DG 1 1_555 -0.095 -4.082 2.559 -166.701 -1.614 -24.657 2.066 -1.252 0.418 0.857 -88.571 -167.016 17 CC_DG17DC18:DG1DC2_DD C 17 ? D 2 ? C 18 ? D 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JJ4 _pdbx_initial_refinement_model.details 'PDB Entry 1JJ4' #