HEADER OXIDOREDUCTASE 08-SEP-05 2AYT TITLE THE CRYSTAL STRUCTURE OF A PROTEIN DISULFIDE OXIDOREDUCTASE FROM TITLE 2 AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN DISULFIDE OXIDOREDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS PROTEIN DISULFIDE OXIDOREDUCTASE, GLUTAREDOXIN, THIOREDOXIN FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PEDONE,K.D'AMBROSIO,G.DE SIMONE,M.ROSSI,C.PEDONE,S.BARTOLUCCI REVDAT 5 06-NOV-24 2AYT 1 REMARK REVDAT 4 25-OCT-23 2AYT 1 REMARK SEQADV REVDAT 3 13-JUL-11 2AYT 1 VERSN REVDAT 2 24-FEB-09 2AYT 1 VERSN REVDAT 1 18-JUL-06 2AYT 0 JRNL AUTH E.PEDONE,K.D'AMBROSIO,G.DE SIMONE,M.ROSSI,C.PEDONE, JRNL AUTH 2 S.BARTOLUCCI JRNL TITL INSIGHTS ON A NEW PDI-LIKE FAMILY: STRUCTURAL AND FUNCTIONAL JRNL TITL 2 ANALYSIS OF A PROTEIN DISULFIDE OXIDOREDUCTASE FROM THE JRNL TITL 3 BACTERIUM AQUIFEX AEOLICUS JRNL REF J.MOL.BIOL. V. 356 155 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16364362 JRNL DOI 10.1016/J.JMB.2005.11.041 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.D'AMBROSIO,G.DE SIMONE,E.PEDONE,M.ROSSI,S.BARTOLUCCI, REMARK 1 AUTH 2 C.PEDONE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 A PROTEIN DISULFIDE OXIDOREDUCTASE FROM AQUIFEX AEOLICUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 2076 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15502332 REMARK 1 DOI 10.1107/S0907444904022632 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 27916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1A8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CHLORIDE, REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 80.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.50556 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.03333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 80.55000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.50556 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.03333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 80.55000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.50556 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.03333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 80.55000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 46.50556 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.03333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 80.55000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 46.50556 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.03333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 80.55000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 46.50556 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.03333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 93.01113 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 102.06667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 93.01113 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 102.06667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 93.01113 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 102.06667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 93.01113 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.06667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 93.01113 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 102.06667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 93.01113 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 102.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 105450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -302.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 161.10000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 80.55000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 139.51669 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 80.55000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -46.50556 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.06667 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 93.01113 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 102.06667 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 161.10000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 93.01113 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 102.06667 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 MET B 1 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 71 CD CE NZ REMARK 480 LYS B 120 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 -92.00 -140.38 REMARK 500 ARG A 119 16.48 52.85 REMARK 500 VAL A 188 -72.57 -126.03 REMARK 500 LYS B 20 -87.81 -138.05 REMARK 500 HIS B 70 77.44 -116.88 REMARK 500 ASP B 80 12.64 -141.80 REMARK 500 ARG B 119 -23.49 68.99 REMARK 500 GLN B 186 57.61 34.01 REMARK 500 VAL B 188 -63.35 -120.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A8L RELATED DB: PDB REMARK 900 A PROTEIN DISULFIDE OXIDOREDUCTASE FROM THE ARCHAEON PYROCOCCUS REMARK 900 FURIOSUS DBREF 2AYT A 1 229 UNP O66753 O66753_AQUAE 1 229 DBREF 2AYT B 1 229 UNP O66753 O66753_AQUAE 1 229 SEQADV 2AYT LEU A 230 UNP O66753 EXPRESSION TAG SEQADV 2AYT GLU A 231 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 232 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 233 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 234 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 235 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 236 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS A 237 UNP O66753 EXPRESSION TAG SEQADV 2AYT LEU B 230 UNP O66753 EXPRESSION TAG SEQADV 2AYT GLU B 231 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 232 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 233 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 234 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 235 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 236 UNP O66753 EXPRESSION TAG SEQADV 2AYT HIS B 237 UNP O66753 EXPRESSION TAG SEQRES 1 A 237 MET LEU LEU ASN LEU ASP VAL ARG MET GLN LEU LYS GLU SEQRES 2 A 237 LEU ALA GLN LYS GLU PHE LYS GLU PRO VAL SER ILE LYS SEQRES 3 A 237 LEU PHE SER GLN ALA ILE GLY CYS GLU SER CYS GLN THR SEQRES 4 A 237 ALA GLU GLU LEU LEU LYS GLU THR VAL GLU VAL ILE GLY SEQRES 5 A 237 GLU ALA VAL GLY GLN ASP LYS ILE LYS LEU ASP ILE TYR SEQRES 6 A 237 SER PRO PHE THR HIS LYS GLU GLU THR GLU LYS TYR GLY SEQRES 7 A 237 VAL ASP ARG VAL PRO THR ILE VAL ILE GLU GLY ASP LYS SEQRES 8 A 237 ASP TYR GLY ILE ARG TYR ILE GLY LEU PRO ALA GLY LEU SEQRES 9 A 237 GLU PHE THR THR LEU ILE ASN GLY ILE PHE HIS VAL SER SEQRES 10 A 237 GLN ARG LYS PRO GLN LEU SER GLU LYS THR LEU GLU LEU SEQRES 11 A 237 LEU GLN VAL VAL ASP ILE PRO ILE GLU ILE TRP VAL PHE SEQRES 12 A 237 VAL THR THR SER CYS GLY TYR CYS PRO SER ALA ALA VAL SEQRES 13 A 237 MET ALA TRP ASP PHE ALA LEU ALA ASN ASP TYR ILE THR SEQRES 14 A 237 SER LYS VAL ILE ASP ALA SER GLU ASN GLN ASP LEU ALA SEQRES 15 A 237 GLU GLN PHE GLN VAL VAL GLY VAL PRO LYS ILE VAL ILE SEQRES 16 A 237 ASN LYS GLY VAL ALA GLU PHE VAL GLY ALA GLN PRO GLU SEQRES 17 A 237 ASN ALA PHE LEU GLY TYR ILE MET ALA VAL TYR GLU LYS SEQRES 18 A 237 LEU LYS ARG GLU LYS GLU GLN ALA LEU GLU HIS HIS HIS SEQRES 19 A 237 HIS HIS HIS SEQRES 1 B 237 MET LEU LEU ASN LEU ASP VAL ARG MET GLN LEU LYS GLU SEQRES 2 B 237 LEU ALA GLN LYS GLU PHE LYS GLU PRO VAL SER ILE LYS SEQRES 3 B 237 LEU PHE SER GLN ALA ILE GLY CYS GLU SER CYS GLN THR SEQRES 4 B 237 ALA GLU GLU LEU LEU LYS GLU THR VAL GLU VAL ILE GLY SEQRES 5 B 237 GLU ALA VAL GLY GLN ASP LYS ILE LYS LEU ASP ILE TYR SEQRES 6 B 237 SER PRO PHE THR HIS LYS GLU GLU THR GLU LYS TYR GLY SEQRES 7 B 237 VAL ASP ARG VAL PRO THR ILE VAL ILE GLU GLY ASP LYS SEQRES 8 B 237 ASP TYR GLY ILE ARG TYR ILE GLY LEU PRO ALA GLY LEU SEQRES 9 B 237 GLU PHE THR THR LEU ILE ASN GLY ILE PHE HIS VAL SER SEQRES 10 B 237 GLN ARG LYS PRO GLN LEU SER GLU LYS THR LEU GLU LEU SEQRES 11 B 237 LEU GLN VAL VAL ASP ILE PRO ILE GLU ILE TRP VAL PHE SEQRES 12 B 237 VAL THR THR SER CYS GLY TYR CYS PRO SER ALA ALA VAL SEQRES 13 B 237 MET ALA TRP ASP PHE ALA LEU ALA ASN ASP TYR ILE THR SEQRES 14 B 237 SER LYS VAL ILE ASP ALA SER GLU ASN GLN ASP LEU ALA SEQRES 15 B 237 GLU GLN PHE GLN VAL VAL GLY VAL PRO LYS ILE VAL ILE SEQRES 16 B 237 ASN LYS GLY VAL ALA GLU PHE VAL GLY ALA GLN PRO GLU SEQRES 17 B 237 ASN ALA PHE LEU GLY TYR ILE MET ALA VAL TYR GLU LYS SEQRES 18 B 237 LEU LYS ARG GLU LYS GLU GLN ALA LEU GLU HIS HIS HIS SEQRES 19 B 237 HIS HIS HIS HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL B 400 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *294(H2 O) HELIX 1 1 ASN A 4 PHE A 19 1 16 HELIX 2 2 SER A 36 GLY A 56 1 21 HELIX 3 3 HIS A 70 TYR A 77 1 8 HELIX 4 4 ALA A 102 LEU A 104 5 3 HELIX 5 5 GLU A 105 GLN A 118 1 14 HELIX 6 6 SER A 124 GLN A 132 1 9 HELIX 7 7 TYR A 150 ASN A 165 1 16 HELIX 8 8 ASN A 178 PHE A 185 1 8 HELIX 9 9 PRO A 207 ALA A 229 1 23 HELIX 10 10 ASN B 4 PHE B 19 1 16 HELIX 11 11 SER B 36 GLY B 56 1 21 HELIX 12 12 HIS B 70 TYR B 77 1 8 HELIX 13 13 ALA B 102 LEU B 104 5 3 HELIX 14 14 GLU B 105 ARG B 119 1 15 HELIX 15 15 SER B 124 GLN B 132 1 9 HELIX 16 16 TYR B 150 ASN B 165 1 16 HELIX 17 17 ASN B 178 PHE B 185 1 8 HELIX 18 18 PRO B 207 LYS B 226 1 20 SHEET 1 A16 ILE A 60 TYR A 65 0 SHEET 2 A16 VAL A 23 PHE A 28 1 N LEU A 27 O ASP A 63 SHEET 3 A16 THR A 84 GLU A 88 -1 O GLU A 88 N SER A 24 SHEET 4 A16 ILE A 95 ILE A 98 -1 O TYR A 97 N ILE A 85 SHEET 5 A16 ILE A 168 ASP A 174 1 O VAL A 172 N ILE A 98 SHEET 6 A16 ILE A 138 VAL A 144 1 N ILE A 140 O THR A 169 SHEET 7 A16 LYS A 192 ILE A 195 -1 O LYS A 192 N PHE A 143 SHEET 8 A16 ALA A 200 VAL A 203 -1 O ALA A 200 N ILE A 195 SHEET 9 A16 ALA B 200 VAL B 203 -1 O GLU B 201 N GLU A 201 SHEET 10 A16 LYS B 192 ILE B 195 -1 N ILE B 193 O PHE B 202 SHEET 11 A16 ILE B 138 VAL B 144 -1 N PHE B 143 O LYS B 192 SHEET 12 A16 ILE B 168 ASP B 174 1 O THR B 169 N ILE B 140 SHEET 13 A16 ILE B 95 ILE B 98 1 N ILE B 98 O VAL B 172 SHEET 14 A16 THR B 84 GLU B 88 -1 N ILE B 85 O TYR B 97 SHEET 15 A16 VAL B 23 PHE B 28 -1 N SER B 24 O GLU B 88 SHEET 16 A16 ILE B 60 TYR B 65 1 O TYR B 65 N LEU B 27 SSBOND 1 CYS A 34 CYS A 37 1555 1555 2.04 SSBOND 2 CYS A 148 CYS A 151 1555 1555 2.03 SSBOND 3 CYS B 34 CYS B 37 1555 1555 2.04 SSBOND 4 CYS B 148 CYS B 151 1555 1555 2.05 CISPEP 1 VAL A 82 PRO A 83 0 -0.48 CISPEP 2 VAL A 190 PRO A 191 0 0.11 CISPEP 3 VAL B 82 PRO B 83 0 -0.12 CISPEP 4 VAL B 190 PRO B 191 0 -0.08 SITE 1 AC1 4 PRO A 207 GLU A 208 HOH A 459 ARG B 224 SITE 1 AC2 6 ARG A 224 HOH A 515 HOH A 547 PRO B 207 SITE 2 AC2 6 GLU B 208 HOH B 445 SITE 1 AC3 6 ASP B 80 ARG B 81 ILE B 98 TRP B 141 SITE 2 AC3 6 LYS B 171 LEU B 181 SITE 1 AC4 8 ASP A 80 ARG A 81 ILE A 98 GLU A 139 SITE 2 AC4 8 TRP A 141 LYS A 171 LEU A 181 HOH A 517 SITE 1 AC5 7 GLN A 30 ILE A 32 HOH A 448 VAL B 7 SITE 2 AC5 7 ALA B 102 GLY B 103 HOH B 401 SITE 1 AC6 6 THR A 145 SER A 147 CYS A 148 VAL A 190 SITE 2 AC6 6 HOH A 548 HOH A 549 CRYST1 161.100 161.100 153.100 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006207 0.003584 0.000000 0.00000 SCALE2 0.000000 0.007168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006532 0.00000